Wall clock time and date at job start Tue Mar 31 2020 05:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21591 * 119.99538 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00462 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00326 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.24630 * 35.54426 * 15 14 12 17 17 C 1.52818 * 109.25031 * 276.12249 * 15 14 12 18 18 C 1.53623 * 110.70100 * 185.95877 * 17 15 14 19 19 N 1.45668 * 107.80140 * 57.37876 * 18 17 15 20 20 C 1.47094 * 116.53820 * 177.32207 * 19 18 17 21 21 C 1.55195 * 103.52454 * 162.42163 * 20 19 18 22 22 C 1.54987 * 104.93137 * 335.99961 * 21 20 19 23 23 C 1.48724 * 109.34122 * 294.44304 * 19 18 17 24 24 H 1.09000 * 110.34600 * 309.51503 * 23 19 18 25 25 C 1.52251 * 107.50444 * 69.80125 * 23 19 18 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 32 32 H 0.97004 * 119.99310 * 359.97438 * 14 12 11 33 33 H 1.09003 * 109.23073 * 306.27362 * 17 15 14 34 34 H 1.08996 * 109.23413 * 65.64440 * 17 15 14 35 35 H 1.09001 * 109.79781 * 297.79699 * 18 17 15 36 36 H 1.09006 * 109.79383 * 176.94467 * 18 17 15 37 37 H 1.09008 * 110.61092 * 280.92844 * 20 19 18 38 38 H 1.08999 * 110.61576 * 43.90929 * 20 19 18 39 39 H 1.09000 * 110.34853 * 94.86494 * 21 20 19 40 40 H 1.09001 * 110.34533 * 217.03462 * 21 20 19 41 41 H 1.09000 * 110.48724 * 238.83696 * 22 21 20 42 42 H 1.08999 * 110.48886 * 116.18378 * 22 21 20 43 43 H 1.08997 * 109.84297 * 177.57069 * 25 23 19 44 44 H 1.09004 * 109.89095 * 56.63859 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1864 -6.0981 0.0018 13 8 3.4023 -6.0981 0.0023 14 7 1.5126 -7.2653 0.0018 15 6 2.2450 -8.5339 0.0019 16 1 3.1498 -8.4264 0.6002 17 6 2.6302 -8.8934 -1.4325 18 6 3.2697 -10.2891 -1.4895 19 7 2.3172 -11.2386 -0.9299 20 6 2.7142 -12.6549 -0.9467 21 6 1.7591 -13.3117 0.0852 22 6 1.3353 -12.1572 1.0284 23 6 2.1201 -10.9451 0.5147 24 1 3.0826 -10.8642 1.0198 25 6 1.3596 -9.6300 0.6152 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8718 -3.6044 -0.8895 30 1 2.8718 -3.6044 0.8904 31 1 0.5426 -4.9308 0.0011 32 1 0.5425 -7.2652 0.0018 33 1 1.7373 -8.8818 -2.0577 34 1 3.3406 -8.1574 -1.8087 35 1 4.1884 -10.2985 -0.9029 36 1 3.4890 -10.5527 -2.5242 37 1 2.5626 -13.0841 -1.9372 38 1 3.7523 -12.7662 -0.6339 39 1 0.8871 -13.7297 -0.4178 40 1 2.2815 -14.0878 0.6446 41 1 1.6138 -12.3836 2.0576 42 1 0.2629 -11.9771 0.9531 43 1 1.1561 -9.3992 1.6608 44 1 0.4224 -9.7004 0.0629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343995982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:59 Heat of formation + Delta-G solvation = -41.789235 kcal Electronic energy + Delta-G solvation = -21946.055169 eV Core-core repulsion = 18704.294504 eV Total energy + Delta-G solvation = -3241.760665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46433 -39.28238 -36.03590 -34.62069 -33.33999 -32.77482 -31.75955 -29.63740 -28.87756 -27.06971 -24.64054 -23.22610 -22.00496 -21.24388 -20.80968 -20.38471 -20.08516 -17.95064 -16.42452 -16.27421 -15.86018 -15.60055 -15.37844 -15.02977 -14.51482 -14.23940 -14.06872 -13.80660 -13.38843 -13.20899 -12.94287 -12.85696 -12.60973 -12.26240 -11.81116 -11.61777 -11.41153 -11.29802 -11.16275 -11.03166 -10.86051 -10.80700 -10.65065 -10.60638 -10.28043 -9.88065 -9.52388 -9.23596 -8.94912 -8.70251 -8.46097 -8.20808 -6.07294 -4.09733 3.07083 3.31073 3.37112 3.41864 3.63796 3.67835 4.22312 4.34760 4.42329 4.63017 4.67559 4.70052 4.85772 4.96694 5.00618 5.15382 5.20771 5.29282 5.29814 5.30143 5.48761 5.52093 5.54938 5.58242 5.70478 5.74997 5.82010 5.92453 6.04654 6.20024 6.35177 6.43160 6.63004 6.71214 6.81333 6.92377 7.04986 7.30806 7.60087 7.66212 7.92215 8.28822 8.49426 8.95492 9.05651 9.54850 11.04413 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.055376 B = 0.002499 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.512967 B =11200.910272 C =11434.865004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.600 6.600 14 N -0.749 5.749 15 C 0.167 3.833 16 H 0.081 0.919 17 C -0.126 4.126 18 C 0.058 3.942 19 N -0.525 5.525 20 C 0.041 3.959 21 C -0.122 4.122 22 C -0.115 4.115 23 C 0.064 3.936 24 H 0.054 0.946 25 C -0.111 4.111 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -26.767 0.101 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.398 3.602 13 O -0.479 6.479 14 N -0.404 5.404 15 C 0.061 3.939 16 H 0.099 0.901 17 C -0.165 4.165 18 C -0.070 4.070 19 N -0.250 5.250 20 C -0.087 4.087 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.044 4.044 24 H 0.072 0.928 25 C -0.150 4.150 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.139 -26.515 -0.226 26.540 hybrid contribution 0.280 0.903 0.321 0.998 sum 1.419 -25.612 0.095 25.652 Atomic orbital electron populations 1.69957 1.06085 1.26824 1.50505 1.25000 0.94900 0.99406 0.95049 0.86508 0.79838 0.83000 0.78183 1.20571 1.21196 1.19730 1.21059 0.93268 0.90381 1.51169 0.92233 1.19324 0.94262 0.91095 0.97786 1.21571 0.95612 0.80481 1.00565 1.45540 1.09828 1.05351 1.78542 1.16095 0.85681 0.80542 0.77866 1.90877 1.11794 1.86671 1.58513 1.45209 1.09335 1.04477 1.81417 1.20761 0.95309 0.81667 0.96149 0.90118 1.22012 1.01737 0.95289 0.97453 1.21983 0.93056 0.92000 1.00005 1.63944 1.44873 1.01871 1.14315 1.22835 0.97113 0.88781 0.99983 1.22534 0.99412 0.97405 0.96634 1.22138 1.00777 0.93831 0.98597 1.22365 0.98336 0.94735 0.89007 0.92815 1.21782 0.99199 0.92725 1.01259 0.92881 0.95979 0.95994 0.92857 0.92867 0.77421 0.77283 0.91053 0.90682 0.94556 0.90483 0.90225 0.94228 0.90961 0.91473 0.91249 0.90658 0.90822 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -13.35 5.56 -65.23 -0.36 -13.71 16 12 C 0.70 12.44 8.51 -86.92 -0.74 11.70 16 13 O -0.60 -13.04 16.01 5.29 0.08 -12.96 16 14 N -0.75 -9.74 5.07 -58.43 -0.30 -10.04 16 15 C 0.17 1.97 2.50 -67.68 -0.17 1.80 16 16 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 17 C -0.13 -1.45 5.60 -26.50 -0.15 -1.60 16 18 C 0.06 0.57 5.87 -4.17 -0.02 0.55 16 19 N -0.52 -4.77 4.84 -224.48 -1.09 -5.86 16 20 C 0.04 0.30 6.71 -2.56 -0.02 0.29 16 21 C -0.12 -0.76 7.05 -24.52 -0.17 -0.94 16 22 C -0.12 -0.78 6.65 -25.55 -0.17 -0.95 16 23 C 0.06 0.55 2.50 -66.95 -0.17 0.38 16 24 H 0.05 0.49 7.97 -51.93 -0.41 0.08 16 25 C -0.11 -1.00 5.10 -26.77 -0.14 -1.13 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.39 6.10 8.49 -40.82 -0.35 5.75 16 32 H 0.39 4.07 8.61 -40.82 -0.35 3.71 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.37 7.98 -51.93 -0.41 -0.05 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.50 8.00 -51.93 -0.42 0.09 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -32.21 350.05 -10.79 -43.00 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.79 Total: 3.37 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.32 Total: -0.04 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -1.01 Total: -55.20 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.21 -10.79 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343995982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.209 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds