Wall clock time and date at job start Tue Mar 31 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47222 * 179.97438 * 8 7 6 10 10 C 1.46896 * 111.00315 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47480 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.46809 * 300.00205 * 11 10 9 13 13 C 1.52997 * 109.46819 * 60.00143 * 11 10 9 14 14 C 1.52997 * 109.47226 * 179.97438 * 11 10 9 15 15 C 1.50698 * 109.47145 * 179.97438 * 14 11 10 16 16 H 1.07995 * 119.99881 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00032 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00128 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99983 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47113 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47334 * 119.99971 * 19 17 15 22 22 H 1.48495 * 109.47098 * 240.00208 * 19 17 15 23 23 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 24 24 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 25 25 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 26 26 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 27 27 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 28 28 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 29 29 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 30 30 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 31 31 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 32 32 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 33 33 H 1.00898 * 111.00455 * 303.95647 * 9 8 7 34 34 H 1.09004 * 109.47323 * 300.00037 * 10 9 8 35 35 H 1.08996 * 109.47353 * 59.99760 * 10 9 8 36 36 H 1.08996 * 109.47383 * 59.99799 * 12 11 10 37 37 H 1.09002 * 109.46734 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.47685 * 299.99638 * 12 11 10 39 39 H 1.09001 * 109.47557 * 59.99973 * 13 11 10 40 40 H 1.08999 * 109.47100 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.47073 * 299.99994 * 13 11 10 42 42 H 1.09004 * 109.47539 * 299.99996 * 14 11 10 43 43 H 1.09004 * 109.47202 * 60.00151 * 14 11 10 44 44 H 0.96997 * 119.99974 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 7 6.9225 -2.8087 -2.8276 10 6 8.1571 -3.6037 -2.8668 11 6 8.5531 -3.8596 -4.3224 12 6 7.4318 -4.6238 -5.0290 13 6 8.7844 -2.5232 -5.0304 14 6 9.8393 -4.6871 -4.3631 15 6 10.2290 -4.9396 -5.7968 16 1 9.6203 -4.5486 -6.5986 17 6 11.3625 -5.6698 -6.0847 18 7 12.1035 -6.1464 -5.1083 19 14 11.8459 -5.9823 -7.8618 20 1 10.8536 -5.3446 -8.7641 21 1 13.1904 -5.4062 -8.1178 22 1 11.8774 -7.4449 -8.1164 23 7 2.3030 -1.0840 -0.0002 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5142 27 1 5.5843 -0.8849 0.5130 28 1 4.6208 -2.3815 0.5141 29 1 4.4380 -2.2655 -1.9560 30 1 5.4015 -0.7690 -1.9571 31 1 7.2990 -1.9909 -0.9292 32 1 6.3349 -3.4871 -0.9284 33 1 6.1834 -3.2624 -3.3433 34 1 8.9561 -3.0591 -2.3637 35 1 7.9925 -4.5556 -2.3619 36 1 6.5157 -4.0339 -5.0000 37 1 7.7141 -4.8065 -6.0659 38 1 7.2669 -5.5759 -4.5247 39 1 9.5832 -1.9787 -4.5269 40 1 9.0660 -2.7054 -6.0675 41 1 7.8682 -1.9332 -5.0013 42 1 10.6381 -4.1422 -3.8597 43 1 9.6750 -5.6392 -3.8586 44 1 12.9007 -6.6604 -5.3109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344228713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:10 Heat of formation + Delta-G solvation = 37.566246 kcal Electronic energy + Delta-G solvation = -21373.429875 eV Core-core repulsion = 18135.110322 eV Total energy + Delta-G solvation = -3238.319553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.86431 -37.89825 -36.51240 -35.92257 -33.97476 -32.39752 -31.32926 -29.49073 -27.37637 -26.63275 -26.31931 -24.69690 -23.77234 -22.45976 -21.75146 -21.34467 -18.40004 -17.82849 -17.67228 -16.29333 -16.10871 -15.49561 -14.78203 -14.69155 -14.28028 -14.23721 -13.96105 -13.79283 -13.18268 -13.14433 -12.90389 -12.64603 -12.32384 -12.26483 -12.01497 -11.91231 -11.56687 -11.46457 -11.29435 -11.12329 -10.95803 -10.80907 -10.74591 -10.49291 -10.26867 -10.16577 -10.08121 -9.68344 -9.02019 -8.81944 -8.31779 -8.13122 -5.96156 -3.96076 0.84851 1.91102 2.50835 3.32018 3.32662 3.40603 3.44102 3.72880 4.26238 4.49633 4.53278 4.62570 4.94376 4.97485 4.98732 5.05316 5.17843 5.32012 5.33263 5.39792 5.53470 5.58074 5.66493 5.70786 5.75310 5.92885 5.95902 6.00689 6.24956 6.33176 6.50790 6.66348 6.78957 6.83478 7.20825 7.21284 7.26703 7.38291 7.63845 7.71107 7.85751 7.87749 8.04341 8.48831 9.09573 9.66756 11.15514 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047465 B = 0.002281 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.768438 B =12272.566114 C =12429.726723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.389 5.389 4 O 0.077 5.923 5 C 0.192 3.808 6 C -0.028 4.028 7 C -0.115 4.115 8 C 0.060 3.940 9 N -0.688 5.688 10 C 0.070 3.930 11 C -0.059 4.059 12 C -0.130 4.130 13 C -0.116 4.116 14 C 0.033 3.967 15 C -0.506 4.506 16 H 0.060 0.940 17 C 0.053 3.947 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 N -0.485 5.485 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.339 0.661 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.943 10.237 11.649 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.098 5.098 4 O 0.019 5.981 5 C -0.028 4.028 6 C -0.067 4.067 7 C -0.154 4.154 8 C -0.070 4.070 9 N -0.320 5.320 10 C -0.058 4.058 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.174 4.174 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.147 4.147 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.219 5.219 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.105 11.250 11.618 25.031 hybrid contribution 0.230 -1.216 -0.635 1.391 sum -18.875 10.034 10.983 24.033 Atomic orbital electron populations 1.20137 0.82981 1.04600 1.04364 1.25932 1.00642 0.83590 1.00522 1.74644 0.89449 1.23978 1.21759 1.85297 1.22287 1.24887 1.65623 1.28892 0.97080 0.82118 0.94719 1.20296 0.87778 0.98176 1.00478 1.21579 0.98117 1.02252 0.93418 1.21878 0.95825 0.97935 0.91376 1.60533 1.07405 1.52329 1.11742 1.22110 0.90867 0.94244 0.98586 1.20631 0.97565 0.96332 0.91395 1.21773 0.96489 0.98409 1.02020 1.21604 0.99533 0.95757 1.00485 1.19132 0.90179 0.94013 0.97124 1.21278 1.08363 1.32345 0.92418 0.92235 1.25027 0.96715 0.96157 0.96815 1.69974 1.15961 1.36747 1.31059 0.86602 0.78401 0.77802 0.85593 1.19780 1.21166 1.21219 1.71920 0.99795 1.29381 1.20833 0.89279 0.89034 0.89555 0.87624 0.87133 0.91172 0.90150 0.90714 0.95205 0.84232 0.91492 0.95788 0.94811 0.91705 0.94095 0.94148 0.92704 0.93905 0.96656 0.96914 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.17 1.73 8.22 -156.37 -1.28 0.45 16 3 N -0.39 -4.55 12.16 30.90 0.38 -4.17 16 4 O 0.08 0.83 11.31 18.11 0.20 1.04 16 5 C 0.19 1.85 7.77 -13.06 -0.10 1.75 16 6 C -0.03 -0.19 5.84 -27.88 -0.16 -0.35 16 7 C -0.11 -0.96 5.46 -26.73 -0.15 -1.11 16 8 C 0.06 0.60 5.69 -3.83 -0.02 0.58 16 9 N -0.69 -9.18 5.71 -113.79 -0.65 -9.83 16 10 C 0.07 1.16 4.65 -3.82 -0.02 1.14 16 11 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 12 C -0.13 -2.36 7.89 37.15 0.29 -2.07 16 13 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 14 C 0.03 0.82 4.04 -27.89 -0.11 0.71 16 15 C -0.51 -13.73 7.65 -34.44 -0.26 -14.00 16 16 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 17 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 N -0.49 -5.35 11.55 -9.87 -0.11 -5.46 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.34 4.39 6.77 -39.29 -0.27 4.12 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 37 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 41 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -31.41 357.00 -7.88 -39.29 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.46 Total: -2.12 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.33 Total: -14.67 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.35 Total: -45.42 kcal Atomic # 8 Polarization: 0.83 SS G_CDS: 0.20 Total: 1.04 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.41 -7.88 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344228713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.853 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds