Wall clock time and date at job start Tue Mar 31 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47222 * 179.97438 * 8 7 6 10 10 C 1.46896 * 111.00315 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47480 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.46809 * 300.00205 * 11 10 9 13 13 C 1.52997 * 109.46819 * 60.00143 * 11 10 9 14 14 C 1.52997 * 109.47226 * 179.97438 * 11 10 9 15 15 C 1.50698 * 109.47145 * 179.97438 * 14 11 10 16 16 H 1.07995 * 119.99881 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00032 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00128 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99983 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47113 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47334 * 119.99971 * 19 17 15 22 22 H 1.48495 * 109.47098 * 240.00208 * 19 17 15 23 23 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 24 24 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 25 25 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 26 26 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 27 27 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 28 28 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 29 29 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 30 30 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 31 31 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 32 32 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 33 33 H 1.00898 * 111.00455 * 303.95647 * 9 8 7 34 34 H 1.09004 * 109.47323 * 300.00037 * 10 9 8 35 35 H 1.08996 * 109.47353 * 59.99760 * 10 9 8 36 36 H 1.08996 * 109.47383 * 59.99799 * 12 11 10 37 37 H 1.09002 * 109.46734 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.47685 * 299.99638 * 12 11 10 39 39 H 1.09001 * 109.47557 * 59.99973 * 13 11 10 40 40 H 1.08999 * 109.47100 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.47073 * 299.99994 * 13 11 10 42 42 H 1.09004 * 109.47539 * 299.99996 * 14 11 10 43 43 H 1.09004 * 109.47202 * 60.00151 * 14 11 10 44 44 H 0.96997 * 119.99974 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 7 6.9225 -2.8087 -2.8276 10 6 8.1571 -3.6037 -2.8668 11 6 8.5531 -3.8596 -4.3224 12 6 7.4318 -4.6238 -5.0290 13 6 8.7844 -2.5232 -5.0304 14 6 9.8393 -4.6871 -4.3631 15 6 10.2290 -4.9396 -5.7968 16 1 9.6203 -4.5486 -6.5986 17 6 11.3625 -5.6698 -6.0847 18 7 12.1035 -6.1464 -5.1083 19 14 11.8459 -5.9823 -7.8618 20 1 10.8536 -5.3446 -8.7641 21 1 13.1904 -5.4062 -8.1178 22 1 11.8774 -7.4449 -8.1164 23 7 2.3030 -1.0840 -0.0002 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5142 27 1 5.5843 -0.8849 0.5130 28 1 4.6208 -2.3815 0.5141 29 1 4.4380 -2.2655 -1.9560 30 1 5.4015 -0.7690 -1.9571 31 1 7.2990 -1.9909 -0.9292 32 1 6.3349 -3.4871 -0.9284 33 1 6.1834 -3.2624 -3.3433 34 1 8.9561 -3.0591 -2.3637 35 1 7.9925 -4.5556 -2.3619 36 1 6.5157 -4.0339 -5.0000 37 1 7.7141 -4.8065 -6.0659 38 1 7.2669 -5.5759 -4.5247 39 1 9.5832 -1.9787 -4.5269 40 1 9.0660 -2.7054 -6.0675 41 1 7.8682 -1.9332 -5.0013 42 1 10.6381 -4.1422 -3.8597 43 1 9.6750 -5.6392 -3.8586 44 1 12.9007 -6.6604 -5.3109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344228713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:10 Heat of formation + Delta-G solvation = 16.849869 kcal Electronic energy + Delta-G solvation = -21374.328204 eV Core-core repulsion = 18135.110322 eV Total energy + Delta-G solvation = -3239.217882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.62505 -39.25147 -37.34265 -36.84154 -35.15123 -34.14509 -32.31895 -30.11306 -29.07284 -27.89357 -27.83412 -26.09751 -24.67064 -23.95736 -22.70071 -22.02217 -19.48493 -19.12283 -18.42364 -18.31148 -17.08559 -16.62079 -16.18931 -15.72991 -15.43993 -15.35868 -14.89395 -14.53252 -14.48542 -14.33906 -13.89319 -13.81712 -13.51615 -13.41169 -13.27300 -13.03356 -12.79677 -12.65184 -12.45706 -12.34420 -12.27017 -12.21096 -12.10670 -12.06775 -11.83414 -11.67663 -11.32919 -10.92726 -10.82032 -10.67055 -10.49484 -9.22359 -8.12784 -6.19218 0.10752 1.17056 1.40748 1.42056 1.53951 1.82724 2.44750 2.68044 3.07106 3.21145 3.32804 3.86979 4.02686 4.17294 4.22339 4.27027 4.33974 4.42825 4.51196 4.55278 4.55942 4.70757 4.73843 4.81854 4.85243 4.89975 4.91719 5.00752 5.08523 5.11353 5.20850 5.23116 5.25478 5.30751 5.54940 5.57177 5.61849 5.68952 5.90696 5.95576 6.16266 6.40032 6.59085 6.96391 7.13418 7.47893 8.99574 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047465 B = 0.002281 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.768438 B =12272.566114 C =12429.726723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.160 3.840 3 N -0.414 5.414 4 O 0.065 5.935 5 C 0.197 3.803 6 C -0.022 4.022 7 C -0.103 4.103 8 C 0.060 3.940 9 N -0.689 5.689 10 C 0.083 3.917 11 C -0.057 4.057 12 C -0.123 4.123 13 C -0.108 4.108 14 C 0.039 3.961 15 C -0.512 4.512 16 H 0.065 0.935 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.508 5.508 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.343 0.657 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.067 0.933 42 H -0.015 1.015 43 H -0.015 1.015 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.525 10.798 11.462 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.127 5.127 4 O 0.010 5.990 5 C -0.023 4.023 6 C -0.061 4.061 7 C -0.142 4.142 8 C -0.069 4.069 9 N -0.321 5.321 10 C -0.046 4.046 11 C -0.057 4.057 12 C -0.180 4.180 13 C -0.165 4.165 14 C 0.001 3.999 15 C -0.550 4.550 16 H 0.083 0.917 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.781 3.219 20 H -0.185 1.185 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.242 5.242 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.162 0.838 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.693 11.819 11.431 26.430 hybrid contribution 0.702 -1.389 -0.530 1.644 sum -19.991 10.430 10.900 25.045 Atomic orbital electron populations 1.20337 0.80614 1.05736 1.05434 1.26646 1.02164 0.83167 0.99292 1.74635 0.89863 1.24871 1.23299 1.85262 1.22170 1.25489 1.66036 1.29401 0.97639 0.81858 0.93358 1.20419 0.87214 0.98773 0.99719 1.21408 0.96966 1.01429 0.94359 1.21940 0.96744 0.98733 0.89491 1.60459 1.06386 1.51237 1.14042 1.21791 0.92322 0.94498 0.95975 1.20505 0.95393 0.95785 0.94029 1.21690 0.97291 0.98711 1.00349 1.21510 1.00398 0.95599 0.98989 1.19022 0.92201 0.93199 0.95461 1.21660 1.08189 1.31567 0.93607 0.91704 1.25923 0.96980 0.96229 1.01160 1.70108 1.16585 1.37831 1.33338 0.85530 0.78141 0.77694 0.80493 1.18547 1.20904 1.20859 1.71947 1.00492 1.29906 1.21882 0.88112 0.87900 0.88398 0.85310 0.85728 0.91674 0.90776 0.90109 0.94301 0.83773 0.92222 0.96222 0.91393 0.93681 0.94389 0.94984 0.94527 0.91385 0.99637 0.99687 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.16 3.16 8.22 138.46 1.14 4.30 16 3 N -0.41 -9.39 12.16 -60.32 -0.73 -10.12 16 4 O 0.07 1.36 11.31 74.85 0.85 2.21 16 5 C 0.20 3.48 7.77 88.38 0.69 4.17 16 6 C -0.02 -0.24 5.84 29.85 0.17 -0.07 16 7 C -0.10 -1.46 5.46 30.59 0.17 -1.29 16 8 C 0.06 1.05 5.69 86.30 0.49 1.54 16 9 N -0.69 -16.77 5.71 -513.91 -2.94 -19.70 16 10 C 0.08 2.66 4.65 86.31 0.40 3.06 16 11 C -0.06 -2.19 0.60 -52.18 -0.03 -2.22 16 12 C -0.12 -4.33 7.89 71.98 0.57 -3.76 16 13 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 14 C 0.04 1.98 4.04 29.85 0.12 2.10 16 15 C -0.51 -28.18 7.65 25.60 0.20 -27.99 16 16 H 0.06 3.44 5.68 -2.91 -0.02 3.42 16 17 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 18 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 19 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 N -0.51 -10.50 11.55 -303.19 -3.50 -14.00 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.34 7.89 6.77 -89.70 -0.61 7.28 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 1.91 6.57 -2.39 -0.02 1.90 16 37 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.47 6.62 -2.39 -0.02 1.45 16 41 H 0.07 2.17 7.60 -2.38 -0.02 2.16 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H -0.02 -0.86 8.14 -2.38 -0.02 -0.87 16 44 H 0.26 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -68.72 357.00 2.06 -66.66 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.37 Total: 8.68 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 5.70 Total: -23.43 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -6.89 Total: -100.57 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.85 Total: 2.21 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.72 2.06 -66.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344228713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.512 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds