Wall clock time and date at job start Tue Mar 31 2020 05:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00332 * 2 1 4 4 H 1.48499 * 109.47272 * 270.00286 * 3 2 1 5 5 H 1.48499 * 109.46735 * 30.00016 * 3 2 1 6 6 H 1.48493 * 109.47140 * 150.00320 * 3 2 1 7 7 C 1.37883 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99629 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47139 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99967 * 180.02562 * 11 10 9 13 13 O 1.21585 * 119.99836 * 5.07447 * 12 11 10 14 14 N 1.34776 * 119.99751 * 185.07749 * 12 11 10 15 15 C 1.47083 * 120.87961 * 175.00062 * 14 12 11 16 16 C 1.53233 * 108.52117 * 231.16690 * 15 14 12 17 17 N 1.46899 * 109.34227 * 306.16602 * 16 15 14 18 18 C 1.46892 * 111.00314 * 187.25447 * 17 16 15 19 19 C 1.53005 * 109.47245 * 170.00137 * 18 17 16 20 20 C 1.53001 * 117.50137 * 175.00088 * 19 18 17 21 21 C 1.52999 * 117.49870 * 243.62581 * 19 18 17 22 22 C 1.46901 * 111.26654 * 63.10517 * 17 16 15 23 23 C 1.47077 * 120.88466 * 354.98343 * 14 12 11 24 24 H 0.97000 * 119.99678 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46575 * 60.00799 * 9 7 2 26 26 H 1.09004 * 109.47288 * 300.01005 * 9 7 2 27 27 H 1.08998 * 109.46891 * 59.99914 * 10 9 7 28 28 H 1.08996 * 109.46980 * 300.00196 * 10 9 7 29 29 H 0.97003 * 120.00105 * 359.97438 * 11 10 9 30 30 H 1.08992 * 109.62930 * 111.45323 * 15 14 12 31 31 H 1.09007 * 109.62739 * 350.86954 * 15 14 12 32 32 H 1.09000 * 109.49776 * 186.21106 * 16 15 14 33 33 H 1.08997 * 109.52183 * 66.14195 * 16 15 14 34 34 H 1.09002 * 109.47285 * 50.00548 * 18 17 16 35 35 H 1.09003 * 109.47468 * 289.99832 * 18 17 16 36 36 H 1.09006 * 115.56212 * 29.31055 * 19 18 17 37 37 H 1.09000 * 117.49859 * 359.97438 * 20 19 18 38 38 H 1.08995 * 117.49669 * 214.97877 * 20 19 18 39 39 H 1.09000 * 117.49928 * 145.02097 * 21 19 18 40 40 H 1.09000 * 117.51911 * 359.97438 * 21 19 18 41 41 H 1.09001 * 109.49368 * 56.85803 * 22 17 16 42 42 H 1.08999 * 109.49514 * 176.93610 * 22 17 16 43 43 H 1.09003 * 109.62450 * 248.54752 * 23 14 12 44 44 H 1.09001 * 109.63142 * 9.12026 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0981 -0.0007 13 8 3.3988 -6.1002 0.0933 14 7 1.5167 -7.2629 -0.1046 15 6 2.2368 -8.5406 -0.2160 16 6 1.6827 -9.3082 -1.4208 17 7 0.2240 -9.4265 -1.2934 18 6 -0.3264 -10.3018 -2.3368 19 6 -1.7950 -10.6012 -2.0291 20 6 -2.5840 -11.4054 -3.0642 21 6 -2.1742 -12.0552 -1.7411 22 6 -0.4218 -8.1073 -1.3183 23 6 0.0461 -7.2903 -0.1092 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.5427 -4.9308 -0.0011 30 1 2.0870 -9.1256 0.6914 31 1 3.3002 -8.3501 -0.3608 32 1 2.1266 -10.3032 -1.4538 33 1 1.9252 -8.7712 -2.3378 34 1 0.2368 -11.2347 -2.3629 35 1 -0.2519 -9.8052 -3.3043 36 1 -2.3288 -9.8241 -1.4820 37 1 -2.0571 -11.7208 -3.9648 38 1 -3.6369 -11.1573 -3.1982 39 1 -2.9575 -12.2347 -1.0047 40 1 -1.3778 -12.7988 -1.7712 41 1 -0.1499 -7.5865 -2.2364 42 1 -1.5039 -8.2312 -1.2768 43 1 -0.3143 -7.7552 0.8085 44 1 -0.3388 -6.2732 -0.1834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345818106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:13 Heat of formation + Delta-G solvation = 4.287957 kcal Electronic energy + Delta-G solvation = -21985.393841 eV Core-core repulsion = 18745.631233 eV Total energy + Delta-G solvation = -3239.762608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.23898 -38.69887 -37.06627 -34.89110 -34.25464 -32.83140 -31.30946 -29.66066 -28.38374 -25.31901 -24.38414 -23.89679 -22.68596 -21.60509 -20.86469 -20.50671 -19.28557 -17.99958 -16.53596 -16.29556 -15.80928 -15.44560 -15.40498 -15.20215 -14.58108 -14.42885 -14.15796 -14.03209 -13.84397 -13.42197 -13.01153 -12.50944 -12.32049 -12.23401 -11.93744 -11.83731 -11.55399 -11.43544 -11.15324 -11.04739 -11.02316 -10.62925 -10.59561 -10.31288 -10.28666 -9.86776 -9.52710 -9.25048 -8.85170 -8.55946 -8.42288 -8.13762 -6.08421 -4.10842 2.88042 3.30321 3.34432 3.36434 3.41185 3.56091 3.72216 4.22732 4.34991 4.44982 4.58751 4.66557 4.74702 4.87863 4.93386 5.05399 5.10312 5.17306 5.28748 5.29933 5.33637 5.37068 5.39093 5.53895 5.57646 5.69504 5.73970 5.78720 5.91130 5.94675 6.27099 6.41678 6.57938 6.73704 6.76962 6.78955 7.02151 7.22443 7.56934 7.64253 7.90855 8.26112 8.39151 8.93542 9.00133 9.53804 11.03316 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.002882 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.550264 B = 9712.011734 C =10474.118053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.739 5.739 12 C 0.703 3.297 13 O -0.597 6.597 14 N -0.638 5.638 15 C 0.137 3.863 16 C 0.041 3.959 17 N -0.534 5.534 18 C 0.086 3.914 19 C -0.147 4.147 20 C -0.183 4.183 21 C -0.174 4.174 22 C 0.038 3.962 23 C 0.117 3.883 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.392 0.608 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -23.591 -4.340 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.395 5.395 12 C 0.404 3.596 13 O -0.476 6.476 14 N -0.377 5.377 15 C 0.013 3.987 16 C -0.087 4.087 17 N -0.259 5.259 18 C -0.041 4.041 19 C -0.166 4.166 20 C -0.221 4.221 21 C -0.211 4.211 22 C -0.090 4.090 23 C -0.007 4.007 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.227 0.773 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.717 -23.623 -3.824 24.391 hybrid contribution -0.084 1.272 -0.833 1.523 sum -4.801 -22.351 -4.657 23.330 Atomic orbital electron populations 1.69958 1.06086 1.26836 1.50504 1.24999 0.94899 0.99403 0.95023 0.86506 0.79859 0.82986 0.78177 1.20584 1.21178 1.19710 1.21056 0.93278 0.90346 1.51186 0.92213 1.19320 0.94250 0.91104 0.97741 1.21594 0.95663 0.80467 1.00628 1.45698 1.09871 1.05337 1.78562 1.15966 0.85308 0.80382 0.77905 1.90870 1.12076 1.86203 1.58403 1.47320 1.05956 1.05568 1.78832 1.21453 0.97324 0.82620 0.97256 1.22530 0.87625 1.00572 0.98001 1.61895 1.04299 1.12088 1.47610 1.21660 0.93159 0.96929 0.92385 1.22301 0.95650 0.95291 1.03340 1.22982 1.00647 1.04836 0.93623 1.22987 1.03519 0.95605 0.98986 1.22550 0.99687 0.88982 0.97804 1.21684 0.80374 1.00236 0.98429 0.92874 0.96063 0.95971 0.92678 0.92928 0.77267 0.91278 0.88624 0.89667 0.94292 0.90587 0.94407 0.87267 0.88934 0.88763 0.88904 0.88869 0.94107 0.89339 0.90689 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 11 N -0.74 -13.71 5.47 -65.23 -0.36 -14.06 16 12 C 0.70 13.02 8.31 -86.91 -0.72 12.30 16 13 O -0.60 -13.24 15.83 5.29 0.08 -13.16 16 14 N -0.64 -9.04 3.01 -178.19 -0.54 -9.58 16 15 C 0.14 1.66 6.58 -3.60 -0.02 1.64 16 16 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 17 N -0.53 -5.04 4.63 -234.33 -1.08 -6.13 16 18 C 0.09 0.69 5.24 -3.83 -0.02 0.67 16 19 C -0.15 -1.09 5.66 -90.62 -0.51 -1.60 16 20 C -0.18 -1.18 10.25 -26.73 -0.27 -1.45 16 21 C -0.17 -1.15 10.18 -26.73 -0.27 -1.43 16 22 C 0.04 0.37 5.47 -3.70 -0.02 0.35 16 23 C 0.12 1.30 6.59 -3.60 -0.02 1.27 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.39 6.34 5.97 -40.82 -0.24 6.10 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.29 7.10 -51.93 -0.37 0.92 16 32 H 0.09 0.68 7.99 -51.93 -0.41 0.26 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 35 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.11 0.84 6.33 -51.93 -0.33 0.51 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.72 6.12 -51.93 -0.32 0.40 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.91 5.64 -51.93 -0.29 0.62 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -32.22 350.86 -10.75 -42.97 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.40 Total: 1.61 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.46 Total: 2.05 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -1.24 Total: -55.25 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.22 -10.75 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345818106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.257 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds