Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47478 * 2 1 4 4 C 1.52992 * 109.47208 * 64.99967 * 3 2 1 5 5 C 1.53000 * 109.47345 * 185.20878 * 4 3 2 6 6 C 1.52999 * 109.47196 * 185.00442 * 3 2 1 7 7 N 1.46896 * 109.47266 * 174.75942 * 6 3 2 8 8 C 1.46900 * 111.00478 * 160.52460 * 7 6 3 9 9 C 1.50705 * 109.46740 * 293.49569 * 8 7 6 10 10 H 1.07993 * 120.00261 * 4.19102 * 9 8 7 11 11 C 1.37884 * 119.99882 * 184.19149 * 9 8 7 12 12 N 1.31509 * 119.99802 * 5.12785 * 11 9 8 13 13 Si 1.86798 * 120.00074 * 185.12602 * 11 9 8 14 14 H 1.48503 * 109.46982 * 89.99960 * 13 11 9 15 15 H 1.48498 * 109.47063 * 209.99750 * 13 11 9 16 16 H 1.48494 * 109.47027 * 330.00069 * 13 11 9 17 17 C 1.46904 * 111.00007 * 284.47977 * 7 6 3 18 18 C 1.50701 * 109.47174 * 169.99951 * 17 7 6 19 19 N 1.31127 * 126.55203 * 89.99805 * 18 17 7 20 20 C 1.34495 * 105.61621 * 179.97438 * 19 18 17 21 21 C 1.50698 * 126.28559 * 179.97438 * 20 19 18 22 22 N 1.29947 * 107.42417 * 0.02562 * 20 19 18 23 23 O 1.21303 * 110.24828 * 359.97438 * 22 20 19 24 24 H 1.09009 * 109.46673 * 300.00520 * 1 2 3 25 25 H 1.08997 * 109.47093 * 59.99836 * 1 2 3 26 26 H 1.08991 * 109.47319 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47004 * 239.99743 * 2 1 3 28 28 H 1.09005 * 109.46989 * 119.99849 * 2 1 3 29 29 H 1.08999 * 109.46650 * 304.99685 * 3 2 1 30 30 H 1.09006 * 109.47568 * 305.20777 * 4 3 2 31 31 H 1.08997 * 109.47294 * 65.20854 * 4 3 2 32 32 H 1.09005 * 109.47097 * 52.57757 * 5 4 3 33 33 H 1.08993 * 109.47489 * 172.58156 * 5 4 3 34 34 H 1.08998 * 109.47438 * 292.58636 * 5 4 3 35 35 H 1.08998 * 109.47488 * 54.75324 * 6 3 2 36 36 H 1.09008 * 109.46954 * 294.75736 * 6 3 2 37 37 H 1.08999 * 109.47274 * 53.48769 * 8 7 6 38 38 H 1.08994 * 109.47740 * 173.49714 * 8 7 6 39 39 H 0.97005 * 120.00248 * 179.97438 * 12 11 9 40 40 H 1.08997 * 109.46949 * 49.99490 * 17 7 6 41 41 H 1.09004 * 109.46533 * 289.99709 * 17 7 6 42 42 H 1.08998 * 109.47436 * 269.97343 * 21 20 19 43 43 H 1.08998 * 109.47502 * 29.98295 * 21 20 19 44 44 H 1.09006 * 109.46469 * 149.97831 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6354 2.1265 1.3073 5 6 2.0309 3.6035 1.2538 6 6 3.5649 1.4442 -0.1258 7 7 4.0442 2.8270 -0.2520 8 6 5.4711 2.9224 0.0840 9 6 5.6638 2.6186 1.5475 10 1 4.8221 2.3128 2.1510 11 6 6.9150 2.7312 2.1160 12 7 7.9192 3.1997 1.4079 13 14 7.1835 2.2182 3.8920 14 1 7.5631 0.7833 3.9407 15 1 8.2702 3.0381 4.4852 16 1 5.9306 2.4251 4.6618 17 6 3.7842 3.3536 -1.5986 18 6 4.0595 4.8350 -1.6205 19 7 5.2032 5.4128 -1.8994 20 6 4.9758 6.7343 -1.7962 21 6 5.9827 7.8327 -2.0216 22 7 3.7289 6.8900 -1.4654 23 8 3.1847 5.8110 -1.3596 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6055 1.9814 -0.8419 30 1 0.5568 2.0439 1.4419 31 1 2.1437 1.6443 2.1422 32 1 1.6295 4.0545 0.3462 33 1 1.6275 4.1195 2.1250 34 1 3.1175 3.6889 1.2518 35 1 3.8573 0.8763 -1.0090 36 1 4.0032 0.9873 0.7615 37 1 6.0338 2.2049 -0.5131 38 1 5.8277 3.9304 -0.1278 39 1 8.7994 3.2793 1.8079 40 1 2.7425 3.1735 -1.8641 41 1 4.4340 2.8526 -2.3162 42 1 6.4838 8.0648 -1.0818 43 1 6.7194 7.5055 -2.7551 44 1 5.4728 8.7227 -2.3908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351520002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = 59.352056 kcal Electronic energy + Delta-G solvation = -23485.859105 eV Core-core repulsion = 20248.484256 eV Total energy + Delta-G solvation = -3237.374849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.07616 -38.31490 -35.74835 -35.18192 -32.91816 -32.17548 -31.06693 -29.03234 -28.20284 -27.90450 -25.28508 -23.36749 -22.93115 -22.23490 -21.46473 -20.12337 -19.34969 -17.64882 -16.94474 -16.53366 -15.48930 -14.92387 -14.48059 -14.35380 -14.28743 -13.82219 -13.66540 -13.31165 -13.18566 -12.69089 -12.52566 -12.19706 -12.11024 -11.98904 -11.79807 -11.61391 -11.39002 -11.11625 -10.92688 -10.89942 -10.78736 -10.75451 -10.53079 -10.34808 -10.27467 -9.99505 -9.85059 -9.69567 -9.40818 -9.22369 -8.42123 -7.28957 -6.03676 -4.05064 1.60412 2.68658 3.29156 3.30041 3.37059 3.40340 4.07500 4.38830 4.44960 4.76266 5.12695 5.22686 5.29520 5.31507 5.34054 5.46623 5.56662 5.59449 5.65677 5.75616 5.80524 5.86244 5.95889 6.00155 6.10308 6.14135 6.21245 6.25151 6.28767 6.40764 6.46688 6.47774 6.63983 6.73496 6.78110 6.98439 7.18281 7.25689 7.61256 7.73784 7.99118 8.07537 8.41689 8.64286 9.01597 9.58208 11.06638 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.008347 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.554095 B = 3353.891839 C = 5622.522280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.102 4.102 5 C -0.159 4.159 6 C 0.067 3.933 7 N -0.520 5.520 8 C 0.182 3.818 9 C -0.510 4.510 10 H 0.066 0.934 11 C 0.059 3.941 12 N -0.891 5.891 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.137 3.863 18 C 0.211 3.789 19 N -0.471 5.471 20 C 0.165 3.835 21 C -0.059 4.059 22 N -0.398 5.398 23 O 0.076 5.924 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.024 0.976 34 H 0.113 0.887 35 H 0.026 0.974 36 H 0.094 0.906 37 H -0.009 1.009 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 -0.451 -6.462 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.105 4.105 4 C -0.139 4.139 5 C -0.216 4.216 6 C -0.061 4.061 7 N -0.246 5.246 8 C 0.057 3.943 9 C -0.549 4.549 10 H 0.084 0.916 11 C -0.143 4.143 12 N -0.530 5.530 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.198 1.198 17 C 0.007 3.993 18 C -0.010 4.010 19 N -0.206 5.206 20 C -0.108 4.108 21 C -0.117 4.117 22 N -0.108 5.108 23 O 0.019 5.981 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.131 0.869 35 H 0.044 0.956 36 H 0.112 0.888 37 H 0.008 0.992 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.285 0.698 -6.117 11.987 hybrid contribution 0.706 -0.855 0.511 1.221 sum -9.579 -0.157 -5.606 11.100 Atomic orbital electron populations 1.21804 0.96331 1.00852 1.01801 1.21537 0.95413 0.97048 1.01783 1.21298 0.95738 0.94780 0.98658 1.21395 0.98689 0.97249 0.96580 1.22135 1.06899 0.94058 0.98498 1.22131 0.93716 0.88515 1.01699 1.62446 1.22985 1.20088 1.19109 1.19974 0.79684 0.98219 0.96381 1.21108 0.94023 1.45674 0.94082 0.91612 1.24963 0.96209 0.95295 0.97880 1.69983 1.01096 1.45101 1.36805 0.86578 0.77933 0.78446 0.84972 1.20718 1.21376 1.19766 1.20550 1.02544 0.81330 0.94876 1.28657 0.83241 0.96171 0.92918 1.71988 1.23217 1.04228 1.21132 1.25809 0.92125 0.92884 0.99958 1.20063 0.95114 0.92605 1.03947 1.74542 1.10750 1.03954 1.21574 1.85234 1.38425 1.10716 1.63690 0.92454 0.93095 0.93421 0.92441 0.91953 0.91877 0.93813 0.92591 0.94383 0.95717 0.86868 0.95587 0.88784 0.99164 0.93309 0.92968 0.88378 0.90986 0.89419 0.89322 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.20 16 2 C -0.12 -1.41 5.40 -26.73 -0.14 -1.56 16 3 C -0.09 -1.18 2.05 -90.62 -0.19 -1.37 16 4 C -0.10 -1.53 5.27 -26.74 -0.14 -1.67 16 5 C -0.16 -2.72 8.94 37.16 0.33 -2.39 16 6 C 0.07 1.12 4.18 -3.83 -0.02 1.10 16 7 N -0.52 -9.91 0.97 -237.51 -0.23 -10.14 16 8 C 0.18 4.46 4.58 -4.97 -0.02 4.44 16 9 C -0.51 -13.60 7.96 -34.44 -0.27 -13.87 16 10 H 0.07 1.72 7.09 -52.49 -0.37 1.35 16 11 C 0.06 1.62 5.45 -17.82 -0.10 1.53 16 12 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 13 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.14 2.24 5.42 -4.97 -0.03 2.21 16 18 C 0.21 3.90 7.15 -13.06 -0.09 3.80 16 19 N -0.47 -9.42 10.57 -9.87 -0.10 -9.53 16 20 C 0.16 2.99 8.22 -156.37 -1.28 1.70 16 21 C -0.06 -0.79 10.51 36.00 0.38 -0.42 16 22 N -0.40 -7.40 12.16 30.90 0.38 -7.03 16 23 O 0.08 1.40 11.31 18.11 0.20 1.60 16 24 H 0.06 0.60 6.46 -51.92 -0.34 0.27 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.83 6.64 -51.93 -0.34 0.48 16 30 H 0.04 0.59 6.34 -51.93 -0.33 0.26 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.62 8.13 -51.93 -0.42 0.19 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 2.34 5.14 -51.93 -0.27 2.07 16 35 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 36 H 0.09 1.79 6.54 -51.92 -0.34 1.45 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 38 H 0.05 1.33 6.27 -51.93 -0.33 1.01 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.10 1.29 6.55 -51.93 -0.34 0.95 16 41 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -30.07 348.93 -7.27 -37.34 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.27 Total: -0.73 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.22 Total: -7.68 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.78 Total: -52.10 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.07 -7.27 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351520002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.689 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds