Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47478 * 2 1 4 4 C 1.52992 * 109.47208 * 64.99967 * 3 2 1 5 5 C 1.53000 * 109.47345 * 185.20878 * 4 3 2 6 6 C 1.52999 * 109.47196 * 185.00442 * 3 2 1 7 7 N 1.46896 * 109.47266 * 174.75942 * 6 3 2 8 8 C 1.46900 * 111.00478 * 160.52460 * 7 6 3 9 9 C 1.50705 * 109.46740 * 293.49569 * 8 7 6 10 10 H 1.07993 * 120.00261 * 4.19102 * 9 8 7 11 11 C 1.37884 * 119.99882 * 184.19149 * 9 8 7 12 12 N 1.31509 * 119.99802 * 5.12785 * 11 9 8 13 13 Si 1.86798 * 120.00074 * 185.12602 * 11 9 8 14 14 H 1.48503 * 109.46982 * 89.99960 * 13 11 9 15 15 H 1.48498 * 109.47063 * 209.99750 * 13 11 9 16 16 H 1.48494 * 109.47027 * 330.00069 * 13 11 9 17 17 C 1.46904 * 111.00007 * 284.47977 * 7 6 3 18 18 C 1.50701 * 109.47174 * 169.99951 * 17 7 6 19 19 N 1.31127 * 126.55203 * 89.99805 * 18 17 7 20 20 C 1.34495 * 105.61621 * 179.97438 * 19 18 17 21 21 C 1.50698 * 126.28559 * 179.97438 * 20 19 18 22 22 N 1.29947 * 107.42417 * 0.02562 * 20 19 18 23 23 O 1.21303 * 110.24828 * 359.97438 * 22 20 19 24 24 H 1.09009 * 109.46673 * 300.00520 * 1 2 3 25 25 H 1.08997 * 109.47093 * 59.99836 * 1 2 3 26 26 H 1.08991 * 109.47319 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47004 * 239.99743 * 2 1 3 28 28 H 1.09005 * 109.46989 * 119.99849 * 2 1 3 29 29 H 1.08999 * 109.46650 * 304.99685 * 3 2 1 30 30 H 1.09006 * 109.47568 * 305.20777 * 4 3 2 31 31 H 1.08997 * 109.47294 * 65.20854 * 4 3 2 32 32 H 1.09005 * 109.47097 * 52.57757 * 5 4 3 33 33 H 1.08993 * 109.47489 * 172.58156 * 5 4 3 34 34 H 1.08998 * 109.47438 * 292.58636 * 5 4 3 35 35 H 1.08998 * 109.47488 * 54.75324 * 6 3 2 36 36 H 1.09008 * 109.46954 * 294.75736 * 6 3 2 37 37 H 1.08999 * 109.47274 * 53.48769 * 8 7 6 38 38 H 1.08994 * 109.47740 * 173.49714 * 8 7 6 39 39 H 0.97005 * 120.00248 * 179.97438 * 12 11 9 40 40 H 1.08997 * 109.46949 * 49.99490 * 17 7 6 41 41 H 1.09004 * 109.46533 * 289.99709 * 17 7 6 42 42 H 1.08998 * 109.47436 * 269.97343 * 21 20 19 43 43 H 1.08998 * 109.47502 * 29.98295 * 21 20 19 44 44 H 1.09006 * 109.46469 * 149.97831 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6354 2.1265 1.3073 5 6 2.0309 3.6035 1.2538 6 6 3.5649 1.4442 -0.1258 7 7 4.0442 2.8270 -0.2520 8 6 5.4711 2.9224 0.0840 9 6 5.6638 2.6186 1.5475 10 1 4.8221 2.3128 2.1510 11 6 6.9150 2.7312 2.1160 12 7 7.9192 3.1997 1.4079 13 14 7.1835 2.2182 3.8920 14 1 7.5631 0.7833 3.9407 15 1 8.2702 3.0381 4.4852 16 1 5.9306 2.4251 4.6618 17 6 3.7842 3.3536 -1.5986 18 6 4.0595 4.8350 -1.6205 19 7 5.2032 5.4128 -1.8994 20 6 4.9758 6.7343 -1.7962 21 6 5.9827 7.8327 -2.0216 22 7 3.7289 6.8900 -1.4654 23 8 3.1847 5.8110 -1.3596 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6055 1.9814 -0.8419 30 1 0.5568 2.0439 1.4419 31 1 2.1437 1.6443 2.1422 32 1 1.6295 4.0545 0.3462 33 1 1.6275 4.1195 2.1250 34 1 3.1175 3.6889 1.2518 35 1 3.8573 0.8763 -1.0090 36 1 4.0032 0.9873 0.7615 37 1 6.0338 2.2049 -0.5131 38 1 5.8277 3.9304 -0.1278 39 1 8.7994 3.2793 1.8079 40 1 2.7425 3.1735 -1.8641 41 1 4.4340 2.8526 -2.3162 42 1 6.4838 8.0648 -1.0818 43 1 6.7194 7.5055 -2.7551 44 1 5.4728 8.7227 -2.3908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351520002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = 42.440014 kcal Electronic energy + Delta-G solvation = -23486.592466 eV Core-core repulsion = 20248.484256 eV Total energy + Delta-G solvation = -3238.108210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.50281 -39.70777 -37.12671 -36.52532 -34.80458 -33.73307 -32.21944 -30.31522 -29.75943 -29.37107 -26.85343 -24.88871 -24.48061 -23.39293 -22.87730 -21.62081 -20.55441 -19.09638 -18.54121 -18.37161 -16.94313 -16.68403 -15.97818 -15.78530 -15.45782 -15.11102 -14.95611 -14.52238 -14.45592 -14.17208 -13.81209 -13.71974 -13.51134 -13.32558 -13.14092 -13.01145 -12.72916 -12.70802 -12.59219 -12.41949 -12.29182 -12.04002 -11.95697 -11.90787 -11.66153 -11.41785 -11.20126 -11.07297 -11.00000 -10.80453 -10.54089 -8.85106 -8.16701 -6.24004 0.16640 1.26233 1.39607 1.40348 1.50844 1.88292 2.40336 2.78235 3.10931 3.16133 3.31627 3.97521 4.01329 4.13973 4.20851 4.34511 4.39112 4.54550 4.55692 4.57182 4.71556 4.74820 4.81309 4.84227 4.90848 4.98345 5.00067 5.12731 5.14109 5.19588 5.24187 5.27882 5.36037 5.39543 5.47426 5.52715 5.63778 5.68729 5.75990 6.07507 6.15461 6.30747 6.53311 6.91979 7.21493 7.43604 8.93920 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.008347 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.554095 B = 3353.891839 C = 5622.522280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.075 4.075 4 C -0.098 4.098 5 C -0.154 4.154 6 C 0.068 3.932 7 N -0.519 5.519 8 C 0.201 3.799 9 C -0.513 4.513 10 H 0.067 0.933 11 C 0.003 3.997 12 N -0.930 5.930 13 Si 0.957 3.043 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.137 3.863 18 C 0.210 3.790 19 N -0.506 5.506 20 C 0.157 3.843 21 C -0.059 4.059 22 N -0.409 5.409 23 O 0.074 5.926 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.066 0.934 37 H -0.038 1.038 38 H 0.018 0.982 39 H 0.260 0.740 40 H 0.139 0.861 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 -1.104 -6.637 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.094 4.094 4 C -0.135 4.135 5 C -0.211 4.211 6 C -0.059 4.059 7 N -0.245 5.245 8 C 0.075 3.925 9 C -0.551 4.551 10 H 0.085 0.915 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.782 3.218 14 H -0.197 1.197 15 H -0.214 1.214 16 H -0.191 1.191 17 C 0.007 3.993 18 C -0.011 4.011 19 N -0.241 5.241 20 C -0.115 4.115 21 C -0.117 4.117 22 N -0.121 5.121 23 O 0.019 5.981 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.084 0.916 37 H -0.020 1.020 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.156 0.844 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.250 0.025 -6.291 13.771 hybrid contribution 1.278 -0.633 0.532 1.523 sum -10.972 -0.608 -5.759 12.406 Atomic orbital electron populations 1.21775 0.94751 1.01820 1.02112 1.21505 0.96684 0.95278 1.01977 1.21233 0.93115 0.96497 0.98546 1.21368 0.99917 0.95563 0.96700 1.22019 1.04391 0.95817 0.98872 1.22165 0.95827 0.86973 1.00934 1.62355 1.19199 1.21788 1.21117 1.19516 0.82652 0.95356 0.94958 1.21439 0.93951 1.44491 0.95261 0.91513 1.25805 0.96132 0.95481 1.02052 1.70118 1.01510 1.46748 1.38688 0.85567 0.77815 0.78314 0.80069 1.19730 1.21446 1.19067 1.20774 1.05026 0.80050 0.93405 1.29003 0.83043 0.96839 0.92180 1.72004 1.24256 1.05479 1.22366 1.26589 0.92704 0.93269 0.98975 1.20285 0.94670 0.92295 1.04453 1.74513 1.11127 1.04129 1.22339 1.85201 1.38393 1.10726 1.63791 0.92678 0.92201 0.92237 0.91454 0.92702 0.90185 0.91467 0.94253 0.93502 0.95930 0.90416 0.94356 0.91579 1.02048 0.96383 0.93077 0.84356 0.90428 0.89280 0.88193 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.67 71.98 0.70 -1.82 16 2 C -0.12 -2.42 5.40 30.59 0.17 -2.25 16 3 C -0.08 -1.89 2.05 -10.80 -0.02 -1.91 16 4 C -0.10 -2.76 5.27 30.59 0.16 -2.60 16 5 C -0.15 -5.11 8.94 71.98 0.64 -4.47 16 6 C 0.07 2.22 4.18 86.30 0.36 2.58 16 7 N -0.52 -19.75 0.97 -905.36 -0.88 -20.63 16 8 C 0.20 10.18 4.58 85.56 0.39 10.57 16 9 C -0.51 -27.99 7.96 25.60 0.20 -27.78 16 10 H 0.07 3.55 7.09 -2.91 -0.02 3.53 16 11 C 0.00 0.20 5.45 84.66 0.46 0.66 16 12 N -0.93 -56.13 13.29 21.45 0.29 -55.85 16 13 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C 0.14 4.34 5.42 85.56 0.46 4.81 16 18 C 0.21 7.73 7.15 88.38 0.63 8.36 16 19 N -0.51 -20.51 10.57 -303.21 -3.21 -23.71 16 20 C 0.16 5.69 8.22 138.46 1.14 6.82 16 21 C -0.06 -1.54 10.51 71.24 0.75 -0.79 16 22 N -0.41 -15.10 12.16 -60.32 -0.73 -15.83 16 23 O 0.07 2.68 11.31 74.88 0.85 3.53 16 24 H 0.05 0.97 6.46 -2.38 -0.02 0.95 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.08 1.78 6.64 -2.39 -0.02 1.77 16 30 H 0.07 1.60 6.34 -2.38 -0.02 1.59 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.44 8.13 -2.38 -0.02 1.42 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 3.21 5.14 -2.39 -0.01 3.20 16 35 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 36 H 0.07 2.54 6.54 -2.38 -0.02 2.52 16 37 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16 38 H 0.02 1.03 6.27 -2.39 -0.01 1.01 16 39 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 40 H 0.14 3.24 6.55 -2.39 -0.02 3.23 16 41 H 0.08 2.42 8.12 -2.38 -0.02 2.40 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -66.78 348.93 5.36 -61.42 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.97 Total: 12.51 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 6.04 Total: -7.82 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.53 Total: -116.02 kcal Atomic # 8 Polarization: 2.68 SS G_CDS: 0.85 Total: 3.53 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -66.78 5.36 -61.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351520002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.858 kcal (2) G-P(sol) polarization free energy of solvation -66.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds