Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00020 * 2 1 4 4 C 1.53001 * 109.47192 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47009 * 66.34871 * 4 3 2 6 6 C 1.46897 * 111.00286 * 282.96597 * 5 4 3 7 7 C 1.50703 * 109.46995 * 303.09626 * 6 5 4 8 8 H 1.07994 * 120.00005 * 0.69625 * 7 6 5 9 9 C 1.37880 * 119.99731 * 180.69950 * 7 6 5 10 10 N 1.31518 * 119.99688 * 184.47636 * 9 7 6 11 11 Si 1.86797 * 120.00198 * 4.48278 * 9 7 6 12 12 H 1.48503 * 109.47479 * 94.75032 * 11 9 7 13 13 H 1.48498 * 109.47440 * 214.75437 * 11 9 7 14 14 H 1.48507 * 109.47287 * 334.75079 * 11 9 7 15 15 C 1.46908 * 111.00227 * 159.01444 * 5 4 3 16 16 C 1.50692 * 109.47445 * 197.81462 * 15 5 4 17 17 C 1.39874 * 126.04168 * 82.88408 * 16 15 5 18 18 C 1.50709 * 125.89747 * 359.97438 * 17 16 15 19 19 N 1.30832 * 108.20549 * 179.97438 * 17 16 15 20 20 N 1.40088 * 108.20304 * 0.02562 * 19 17 16 21 21 C 1.46498 * 126.03286 * 180.02562 * 20 19 17 22 22 C 1.34942 * 107.92620 * 359.75447 * 20 19 17 23 23 C 1.50700 * 126.13123 * 180.24387 * 22 20 19 24 24 H 1.09006 * 109.46724 * 60.00757 * 1 2 3 25 25 H 1.09001 * 109.46776 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47538 * 300.00148 * 1 2 3 27 27 H 1.09000 * 109.47433 * 59.99312 * 3 2 1 28 28 H 1.09004 * 109.47103 * 299.99723 * 3 2 1 29 29 H 1.08996 * 109.47068 * 306.34564 * 4 3 2 30 30 H 1.09004 * 109.47080 * 186.34812 * 4 3 2 31 31 H 1.09007 * 109.46754 * 63.08966 * 6 5 4 32 32 H 1.09003 * 109.47273 * 183.09307 * 6 5 4 33 33 H 0.97003 * 119.99228 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.46563 * 317.81616 * 15 5 4 35 35 H 1.08996 * 109.46912 * 77.81130 * 15 5 4 36 36 H 1.09003 * 109.46774 * 89.99926 * 18 17 16 37 37 H 1.09001 * 109.46888 * 210.00149 * 18 17 16 38 38 H 1.09000 * 109.46702 * 330.00323 * 18 17 16 39 39 H 1.09004 * 109.47411 * 89.97214 * 21 20 19 40 40 H 1.09007 * 109.46805 * 209.97088 * 21 20 19 41 41 H 1.09000 * 109.47417 * 329.96651 * 21 20 19 42 42 H 1.08994 * 109.46995 * 274.81317 * 23 22 20 43 43 H 1.09009 * 109.47002 * 34.80382 * 23 22 20 44 44 H 1.08996 * 109.47693 * 154.80779 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9802 0.5919 -1.2677 6 6 3.7504 -0.8589 -1.2800 7 6 4.4565 -1.4894 -0.1074 8 1 5.0103 -0.8725 0.5847 9 6 4.3955 -2.8538 0.0817 10 7 4.9366 -3.3942 1.1517 11 14 3.5444 -3.9348 -1.1818 12 1 4.5497 -4.4639 -2.1382 13 1 2.8726 -5.0661 -0.4934 14 1 2.5341 -3.1336 -1.9186 15 6 5.3921 0.9033 -1.5280 16 6 5.6960 0.6765 -2.9864 17 6 5.4532 1.5783 -4.0276 18 6 4.8405 2.9479 -3.8855 19 7 5.8497 1.0276 -5.1462 20 7 6.3577 -0.2443 -4.8517 21 6 6.9074 -1.1977 -5.8187 22 6 6.2568 -0.4337 -3.5195 23 6 6.6884 -1.6625 -2.7614 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8492 0.5490 0.8286 30 1 3.9783 2.1742 0.1143 31 1 2.6809 -1.0579 -1.2099 32 1 4.1384 -1.2805 -2.2073 33 1 4.8939 -4.3541 1.2845 34 1 5.5871 1.9453 -1.2739 35 1 6.0248 0.2567 -0.9201 36 1 5.6282 3.6827 -3.7189 37 1 4.2963 3.1987 -4.7960 38 1 4.1541 2.9527 -3.0388 39 1 7.9790 -1.0295 -5.9259 40 1 6.7326 -2.2143 -5.4661 41 1 6.4195 -1.0589 -6.7834 42 1 5.8872 -2.4013 -2.7807 43 1 7.5805 -2.0819 -3.2268 44 1 6.9097 -1.3934 -1.7287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353440672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = 39.189758 kcal Electronic energy + Delta-G solvation = -23757.497405 eV Core-core repulsion = 20519.248253 eV Total energy + Delta-G solvation = -3238.249152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87213 -37.73857 -36.06128 -33.76866 -32.26681 -31.82559 -29.38220 -29.12590 -28.18638 -26.31976 -25.57311 -25.03923 -23.36436 -22.19679 -19.80732 -18.97177 -18.71439 -16.91031 -16.00882 -15.85675 -15.56669 -15.26031 -14.53923 -14.06182 -13.91471 -13.84343 -13.51014 -13.34563 -13.13108 -12.68921 -12.51101 -12.37240 -12.24926 -11.94462 -11.78144 -11.62686 -11.40825 -11.23438 -11.08751 -10.96137 -10.63447 -10.59133 -10.53710 -10.05292 -9.79382 -9.71976 -9.36893 -8.96754 -8.54991 -8.40038 -7.72467 -6.97537 -5.98256 -3.91435 2.34381 2.92493 3.26269 3.29232 3.40654 3.50042 4.46763 4.50962 4.81064 5.16966 5.21639 5.29623 5.37938 5.38644 5.51303 5.59683 5.62769 5.72656 5.77257 5.88866 5.91111 5.95034 6.00547 6.04599 6.06467 6.15217 6.18388 6.30282 6.34513 6.46523 6.59710 6.72962 6.90095 6.93049 7.18711 7.26648 7.52211 7.57525 7.77676 7.86005 8.23112 8.28030 8.34853 8.60138 9.05995 9.68459 11.15245 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.008009 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.548525 B = 3495.319043 C = 4822.131916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.074 3.926 4 C 0.051 3.949 5 N -0.526 5.526 6 C 0.153 3.847 7 C -0.525 4.525 8 H 0.071 0.929 9 C 0.075 3.925 10 N -0.905 5.905 11 Si 0.865 3.135 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.262 1.262 15 C 0.132 3.868 16 C -0.208 4.208 17 C 0.088 3.912 18 C -0.066 4.066 19 N -0.317 5.317 20 N -0.385 5.385 21 C 0.107 3.893 22 C 0.098 3.902 23 C -0.089 4.089 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.031 0.969 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.259 0.741 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 8.065 -7.856 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C -0.003 4.003 4 C -0.077 4.077 5 N -0.250 5.250 6 C 0.026 3.974 7 C -0.564 4.564 8 H 0.089 0.911 9 C -0.126 4.126 10 N -0.544 5.544 11 Si 0.693 3.307 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.186 1.186 15 C 0.004 3.996 16 C -0.219 4.219 17 C -0.078 4.078 18 C -0.125 4.125 19 N -0.140 5.140 20 N -0.168 5.168 21 C -0.035 4.035 22 C -0.029 4.029 23 C -0.147 4.147 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.410 7.972 -9.516 12.421 hybrid contribution -0.252 -1.213 0.791 1.470 sum -0.662 6.759 -8.725 11.057 Atomic orbital electron populations 1.22649 0.83448 1.01942 0.98712 1.88253 1.17432 1.27220 1.94864 1.22507 0.94692 0.84794 0.98300 1.22088 0.92579 0.98660 0.94371 1.62454 1.16926 1.15017 1.30579 1.20365 0.98239 0.83178 0.95615 1.21589 1.31690 0.92686 1.10402 0.91059 1.24810 0.94905 0.98017 0.94866 1.69939 1.46305 1.11356 1.26823 0.87020 0.80662 0.80649 0.82326 1.20787 1.21668 1.18597 1.20216 0.90673 0.98998 0.89763 1.19624 1.10776 0.94530 0.97016 1.22094 0.98090 0.97267 0.90372 1.20105 0.99910 0.89587 1.02923 1.77150 1.21064 0.92789 1.22957 1.48156 1.50107 1.13299 1.05276 1.21680 0.98607 0.90818 0.92382 1.20979 1.00075 0.97893 0.83921 1.20531 1.00542 0.92943 1.00717 0.94985 0.90446 0.95071 0.94536 0.93807 0.91330 0.91789 0.93112 0.96528 0.93109 0.92473 0.92698 0.91435 0.91802 0.89776 0.91484 0.89913 0.89877 0.90184 0.92565 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -7.22 7.96 -35.23 -0.28 -7.50 16 3 C 0.07 1.28 6.26 37.16 0.23 1.51 16 4 C 0.05 0.96 5.36 -3.83 -0.02 0.94 16 5 N -0.53 -10.74 4.56 -237.51 -1.08 -11.82 16 6 C 0.15 3.64 3.69 -4.98 -0.02 3.62 16 7 C -0.52 -13.90 7.72 -34.44 -0.27 -14.17 16 8 H 0.07 2.05 6.33 -52.49 -0.33 1.72 16 9 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 10 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 11 Si 0.87 21.52 27.13 -169.99 -4.61 16.91 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 15 C 0.13 2.52 4.82 -4.98 -0.02 2.49 16 16 C -0.21 -3.95 5.05 -105.06 -0.53 -4.48 16 17 C 0.09 1.57 7.22 -82.40 -0.59 0.98 16 18 C -0.07 -0.93 10.25 36.01 0.37 -0.56 16 19 N -0.32 -5.86 12.58 33.67 0.42 -5.44 16 20 N -0.39 -6.67 4.01 -63.88 -0.26 -6.93 16 21 C 0.11 1.32 11.15 59.85 0.67 1.99 16 22 C 0.10 1.82 6.29 -82.27 -0.52 1.30 16 23 C -0.09 -1.60 9.02 36.01 0.32 -1.28 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.51 5.87 -51.93 -0.30 1.20 16 30 H 0.06 1.00 7.60 -51.93 -0.39 0.61 16 31 H 0.05 1.31 4.99 -51.93 -0.26 1.06 16 32 H 0.02 0.41 4.77 -51.93 -0.25 0.17 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.06 0.96 7.62 -51.93 -0.40 0.56 16 35 H 0.05 1.16 5.42 -51.93 -0.28 0.88 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.17 7.96 -51.93 -0.41 0.75 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.92 7.79 -51.92 -0.40 0.51 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.59 7.14 -51.93 -0.37 1.22 16 43 H 0.06 0.83 7.98 -51.92 -0.41 0.41 16 44 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -32.40 346.21 -6.33 -38.73 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.15 Total: 1.06 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.64 Total: -4.09 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.14 Total: -50.33 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.28 Total: -7.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.61 Total: 16.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.40 -6.33 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353440672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.922 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds