Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48498 * 109.47114 * 269.99957 * 3 2 1 5 5 H 1.48502 * 109.47135 * 29.99994 * 3 2 1 6 6 H 1.48503 * 109.46934 * 149.99921 * 3 2 1 7 7 C 1.37879 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99976 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00205 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47209 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47070 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.48533 * 111.00195 * 307.39905 * 12 11 10 14 14 C 1.55103 * 103.28515 * 200.33199 * 13 12 11 15 15 C 1.54595 * 102.84457 * 37.30647 * 14 13 12 16 16 H 1.08997 * 110.31234 * 97.11961 * 15 14 13 17 17 N 1.46506 * 110.30979 * 219.18514 * 15 14 13 18 18 C 1.34777 * 119.99920 * 272.21185 * 17 15 14 19 19 O 1.21586 * 120.00209 * 359.97438 * 18 17 15 20 20 N 1.34774 * 120.00019 * 179.97438 * 18 17 15 21 21 C 1.46497 * 120.00212 * 179.97438 * 20 18 17 22 22 C 1.52997 * 117.50107 * 223.62051 * 21 20 18 23 23 C 1.52998 * 117.49801 * 154.99753 * 21 20 18 24 24 C 1.47906 * 111.00217 * 190.00135 * 12 11 10 25 25 H 0.97002 * 119.99734 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46972 * 59.99204 * 9 7 2 27 27 H 1.08998 * 109.46680 * 299.99954 * 9 7 2 28 28 H 1.09006 * 109.47239 * 60.00330 * 10 9 7 29 29 H 1.08998 * 109.47533 * 299.99763 * 10 9 7 30 30 H 1.09000 * 109.46950 * 60.00405 * 11 10 9 31 31 H 1.08998 * 109.47040 * 300.00421 * 11 10 9 32 32 H 1.09003 * 110.66452 * 318.71505 * 13 12 11 33 33 H 1.09001 * 110.67045 * 81.67581 * 13 12 11 34 34 H 1.09003 * 110.71219 * 278.99450 * 14 13 12 35 35 H 1.08998 * 110.81026 * 155.65894 * 14 13 12 36 36 H 0.96994 * 119.99820 * 92.20527 * 17 15 14 37 37 H 0.97004 * 120.00070 * 0.02562 * 20 18 17 38 38 H 1.09002 * 115.54807 * 9.32960 * 21 20 18 39 39 H 1.09007 * 117.49558 * 0.02562 * 22 21 20 40 40 H 1.09001 * 117.49920 * 145.02015 * 22 21 20 41 41 H 1.08999 * 117.49793 * 214.97904 * 23 21 20 42 42 H 1.09000 * 117.50280 * 359.97438 * 23 21 20 43 43 H 1.08995 * 109.91186 * 26.49005 * 24 12 11 44 44 H 1.09003 * 110.07774 * 265.29360 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5514 -2.6368 -0.0001 12 7 6.0410 -4.0217 0.0004 13 6 5.4244 -4.8039 1.1023 14 6 6.4002 -5.9960 1.2826 15 6 7.7836 -5.3456 1.0520 16 1 8.2465 -5.0926 2.0058 17 7 8.6501 -6.2495 0.2913 18 6 9.4016 -7.1639 0.9360 19 8 9.3608 -7.2383 2.1489 20 7 10.1983 -7.9957 0.2362 21 6 11.0156 -8.9893 0.9369 22 6 12.4637 -9.1651 0.4756 23 6 11.4242 -10.2425 0.1602 24 6 7.4998 -4.0682 0.2401 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8751 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8904 29 1 3.6577 -3.1507 0.8896 30 1 5.9148 -2.1231 0.8899 31 1 5.9148 -2.1229 -0.8900 32 1 5.3730 -4.2091 2.0143 33 1 4.4326 -5.1547 0.8170 34 1 6.2078 -6.7678 0.5373 35 1 6.3296 -6.4052 2.2903 36 1 8.6828 -6.1899 -0.6762 37 1 10.2311 -7.9361 -0.7314 38 1 10.8088 -9.1018 2.0012 39 1 12.8085 -8.5411 -0.3490 40 1 13.2101 -9.3932 1.2365 41 1 11.4868 -11.1795 0.7136 42 1 11.0846 -10.3280 -0.8720 43 1 7.8109 -3.1910 0.8072 44 1 8.0341 -4.1051 -0.7092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355133257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -4.875022 kcal Electronic energy + Delta-G solvation = -21436.036951 eV Core-core repulsion = 18195.877007 eV Total energy + Delta-G solvation = -3240.159944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49914 -38.97584 -37.46155 -35.12432 -33.78276 -32.95690 -31.79050 -30.07112 -28.45173 -26.26474 -23.10976 -22.87766 -22.83554 -21.36413 -20.99837 -20.74540 -19.70621 -18.83665 -17.10371 -16.73756 -16.04386 -15.68166 -15.43286 -14.99373 -14.78470 -14.42477 -14.25067 -14.09554 -13.25044 -13.10272 -12.95621 -12.57043 -12.49604 -12.06890 -11.94887 -11.80139 -11.63294 -11.61844 -11.22719 -10.95695 -10.92667 -10.87500 -10.72054 -10.43010 -9.91816 -9.73982 -9.58975 -9.40330 -9.16337 -8.96115 -8.52665 -8.29653 -6.03028 -4.00793 2.30360 2.83425 3.31078 3.38388 3.41866 3.53911 3.83414 4.11298 4.33672 4.45228 4.46038 4.51475 4.54872 4.72094 5.04986 5.16460 5.25510 5.30658 5.30860 5.33636 5.45272 5.58479 5.59187 5.60680 5.60933 5.76529 5.90141 6.02077 6.09967 6.13484 6.15405 6.34970 6.49368 6.56849 6.63120 6.84732 7.04066 7.19458 7.32504 7.45462 7.70836 7.81112 8.32881 8.55853 9.02313 9.59529 11.10489 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.057381 B = 0.002328 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.845418 B =12025.164448 C =12206.795656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.101 4.101 11 C 0.044 3.956 12 N -0.515 5.515 13 C 0.036 3.964 14 C -0.133 4.133 15 C 0.154 3.846 16 H 0.094 0.906 17 N -0.733 5.733 18 C 0.708 3.292 19 O -0.589 6.589 20 N -0.720 5.720 21 C 0.102 3.898 22 C -0.197 4.197 23 C -0.192 4.192 24 C 0.028 3.972 25 H 0.262 0.738 26 H 0.013 0.987 27 H 0.011 0.989 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.398 0.602 37 H 0.397 0.603 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.437 -17.300 -1.007 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.084 4.084 12 N -0.240 5.240 13 C -0.092 4.092 14 C -0.173 4.173 15 C 0.049 3.951 16 H 0.112 0.888 17 N -0.388 5.388 18 C 0.408 3.592 19 O -0.466 6.466 20 N -0.373 5.373 21 C -0.005 4.005 22 C -0.236 4.236 23 C -0.230 4.230 24 C -0.101 4.101 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.232 0.768 37 H 0.231 0.769 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.083 -17.418 -0.377 29.724 hybrid contribution 0.617 1.384 -0.309 1.546 sum 24.700 -16.034 -0.685 29.456 Atomic orbital electron populations 1.69920 1.06286 1.26826 1.51291 1.25050 0.94750 0.99190 0.94656 0.86761 0.80307 0.83628 0.78462 1.20310 1.21437 1.19103 1.21140 0.89493 0.94442 1.50576 0.91042 1.19550 0.97200 0.92245 0.96114 1.21530 0.90844 0.99850 1.01694 1.22526 0.98140 0.87306 1.00403 1.64862 1.02572 1.13538 1.42991 1.23263 0.98955 0.93840 0.93162 1.22982 0.93638 0.98204 1.02453 1.21728 0.90112 0.88231 0.95066 0.88776 1.45252 1.46356 1.37238 1.09990 1.15874 0.78585 0.79232 0.85511 1.90925 1.70534 1.73345 1.11838 1.44475 1.46304 1.37106 1.09397 1.21413 0.91292 0.90322 0.97469 1.23459 0.93250 1.02623 1.04268 1.23404 1.03609 0.94179 1.01855 1.23131 0.91191 0.96058 0.99671 0.92782 0.96857 0.97044 0.91971 0.92660 0.94980 0.90965 0.93250 0.89212 0.90467 0.90567 0.76767 0.76901 0.84348 0.88577 0.87991 0.87835 0.88503 0.92664 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.43 16 10 C -0.10 -1.99 4.81 -26.73 -0.13 -2.12 16 11 C 0.04 0.70 5.03 -3.82 -0.02 0.68 16 12 N -0.52 -7.09 5.40 -230.34 -1.24 -8.33 16 13 C 0.04 0.47 5.11 -1.81 -0.01 0.46 16 14 C -0.13 -1.54 6.79 -24.78 -0.17 -1.71 16 15 C 0.15 1.68 3.31 -66.57 -0.22 1.46 16 16 H 0.09 1.15 7.60 -51.93 -0.39 0.75 16 17 N -0.73 -6.71 5.07 -57.35 -0.29 -7.00 16 18 C 0.71 7.74 8.56 -86.92 -0.74 6.99 16 19 O -0.59 -8.90 15.58 5.29 0.08 -8.81 16 20 N -0.72 -5.49 5.57 -58.68 -0.33 -5.82 16 21 C 0.10 0.75 6.43 -67.93 -0.44 0.31 16 22 C -0.20 -1.06 10.46 -26.73 -0.28 -1.34 16 23 C -0.19 -0.97 10.45 -26.73 -0.28 -1.25 16 24 C 0.03 0.31 6.47 -2.75 -0.02 0.30 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.01 0.32 7.20 -51.92 -0.37 -0.06 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 1.09 6.79 -51.93 -0.35 0.73 16 30 H 0.03 0.51 7.81 -51.93 -0.41 0.10 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.67 8.00 -51.93 -0.42 0.26 16 33 H 0.09 1.25 7.65 -51.93 -0.40 0.85 16 34 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.40 2.65 8.34 -40.82 -0.34 2.31 16 37 H 0.40 1.93 8.84 -40.82 -0.36 1.57 16 38 H 0.14 1.25 7.40 -51.93 -0.38 0.87 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.62 7.57 -51.93 -0.39 0.22 16 44 H 0.08 0.79 7.63 -51.93 -0.40 0.39 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -33.55 354.16 -10.76 -44.30 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.57 Total: 0.56 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.85 Total: -10.09 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -1.09 Total: -48.50 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.55 -10.76 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355133257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.425 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds