Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48499 * 109.47539 * 270.00283 * 3 2 1 5 5 H 1.48506 * 109.47099 * 30.00170 * 3 2 1 6 6 H 1.48495 * 109.47150 * 149.99895 * 3 2 1 7 7 C 1.37875 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99872 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00144 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47295 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47327 * 180.02562 * 11 10 9 13 13 C 1.47843 * 110.99640 * 69.15576 * 12 11 10 14 14 C 1.54916 * 104.79337 * 146.36598 * 13 12 11 15 15 C 1.55398 * 101.74107 * 323.02060 * 14 13 12 16 16 H 1.09005 * 110.67856 * 277.17709 * 15 14 13 17 17 N 1.46495 * 110.84661 * 153.86291 * 15 14 13 18 18 C 1.34771 * 120.00262 * 91.46275 * 17 15 14 19 19 O 1.21589 * 119.99969 * 0.02562 * 18 17 15 20 20 N 1.34775 * 120.00264 * 179.97438 * 18 17 15 21 21 C 1.46507 * 119.99978 * 179.97438 * 20 18 17 22 22 C 1.52992 * 117.49930 * 223.62386 * 21 20 18 23 23 C 1.52997 * 117.49518 * 155.00127 * 21 20 18 24 24 C 1.47439 * 111.00045 * 190.00285 * 12 11 10 25 25 H 0.96998 * 120.00189 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46901 * 60.00288 * 9 7 2 27 27 H 1.08995 * 109.47570 * 300.00013 * 9 7 2 28 28 H 1.08998 * 109.47129 * 60.00229 * 10 9 7 29 29 H 1.09000 * 109.47245 * 300.00850 * 10 9 7 30 30 H 1.09006 * 109.47033 * 60.00310 * 11 10 9 31 31 H 1.08995 * 109.47422 * 300.00045 * 11 10 9 32 32 H 1.08996 * 110.37823 * 265.19398 * 13 12 11 33 33 H 1.09002 * 110.37399 * 27.53914 * 13 12 11 34 34 H 1.08995 * 110.98807 * 81.01940 * 14 13 12 35 35 H 1.08997 * 110.99078 * 204.83973 * 14 13 12 36 36 H 0.96997 * 120.00031 * 271.46113 * 17 15 14 37 37 H 0.97000 * 120.00121 * 0.02562 * 20 18 17 38 38 H 1.08996 * 115.54888 * 9.33838 * 21 20 18 39 39 H 1.09000 * 117.50492 * 0.02562 * 22 21 20 40 40 H 1.09005 * 117.49781 * 145.02402 * 22 21 20 41 41 H 1.09002 * 117.50197 * 214.98157 * 23 21 20 42 42 H 1.09009 * 117.50134 * 0.02562 * 23 21 20 43 43 H 1.09002 * 109.88998 * 356.14887 * 24 12 11 44 44 H 1.09003 * 109.88733 * 117.17548 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0414 -4.0213 -0.0014 13 6 5.7550 -4.6840 -1.2916 14 6 6.9474 -5.6475 -1.5147 15 6 8.1340 -4.8181 -0.9500 16 1 8.5022 -4.1150 -1.6971 17 7 9.2114 -5.6970 -0.4885 18 6 10.2051 -6.0441 -1.3302 19 8 10.2076 -5.6275 -2.4725 20 7 11.1966 -6.8522 -0.9055 21 6 12.2764 -7.2300 -1.8207 22 6 12.7208 -8.6940 -1.8230 23 6 13.6203 -7.6225 -1.2037 24 6 7.4955 -4.0677 0.2377 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6581 -3.1504 -0.8907 29 1 3.6586 -3.1501 0.8892 30 1 5.9149 -2.1225 0.8891 31 1 5.9150 -2.1226 -0.8909 32 1 4.8213 -5.2432 -1.2321 33 1 5.7069 -3.9478 -2.0940 34 1 6.8148 -6.5701 -0.9496 35 1 7.0866 -5.8575 -2.5751 36 1 9.2097 -6.0290 0.4228 37 1 11.1948 -7.1843 0.0059 38 1 12.2956 -6.6964 -2.7709 39 1 12.2094 -9.3763 -1.1439 40 1 13.0322 -9.1240 -2.7750 41 1 14.5237 -7.3475 -1.7482 42 1 13.7010 -7.6001 -0.1168 43 1 7.8945 -3.0549 0.2941 44 1 7.7018 -4.5996 1.1665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355133259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -5.964271 kcal Electronic energy + Delta-G solvation = -21402.142418 eV Core-core repulsion = 18161.935240 eV Total energy + Delta-G solvation = -3240.207178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52023 -38.99511 -37.48800 -35.09029 -33.83040 -32.97306 -31.81682 -30.02855 -28.47183 -26.30720 -23.07150 -22.86781 -22.80771 -21.40529 -20.96347 -20.78782 -19.88953 -18.88389 -17.15452 -16.72835 -16.06086 -15.71285 -15.35715 -15.04262 -14.70756 -14.47481 -14.17201 -13.94723 -13.37116 -13.14495 -13.02882 -12.65166 -12.47643 -12.12150 -12.01487 -11.81062 -11.67237 -11.59292 -11.24049 -10.98619 -10.94851 -10.89786 -10.65292 -10.47852 -9.92533 -9.68448 -9.57157 -9.41662 -9.14318 -8.99038 -8.50733 -8.20304 -6.01055 -3.98624 2.24983 2.79277 3.32639 3.39857 3.43565 3.51161 3.75333 4.12136 4.31034 4.46061 4.47874 4.49563 4.52588 4.67928 4.93155 5.14081 5.22913 5.27786 5.31415 5.32797 5.43740 5.53016 5.58527 5.59162 5.65911 5.83535 5.86969 5.97405 6.06930 6.11953 6.17552 6.29701 6.54519 6.58489 6.59856 6.91458 7.10537 7.22613 7.38406 7.48912 7.66000 7.83519 8.28594 8.58373 9.04665 9.61624 11.12495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.051684 B = 0.002339 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.623136 B =11967.664361 C =12172.261810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.096 4.096 11 C 0.047 3.953 12 N -0.525 5.525 13 C 0.044 3.956 14 C -0.140 4.140 15 C 0.142 3.858 16 H 0.097 0.903 17 N -0.732 5.732 18 C 0.708 3.292 19 O -0.587 6.587 20 N -0.719 5.719 21 C 0.101 3.899 22 C -0.196 4.196 23 C -0.192 4.192 24 C 0.037 3.963 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.009 0.991 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.397 0.603 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.618 -16.390 -0.083 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.134 4.134 11 C -0.080 4.080 12 N -0.249 5.249 13 C -0.084 4.084 14 C -0.179 4.179 15 C 0.035 3.965 16 H 0.115 0.885 17 N -0.387 5.387 18 C 0.408 3.592 19 O -0.465 6.465 20 N -0.372 5.372 21 C -0.005 4.005 22 C -0.235 4.235 23 C -0.230 4.230 24 C -0.092 4.092 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.231 0.769 38 H 0.157 0.843 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 26.172 -16.094 -0.737 30.733 hybrid contribution 0.776 0.976 0.307 1.284 sum 26.947 -15.118 -0.430 30.901 Atomic orbital electron populations 1.69918 1.06281 1.26800 1.51385 1.25047 0.94745 0.99172 0.94689 0.86767 0.80340 0.83652 0.78436 1.20376 1.21436 1.19057 1.21146 0.89515 0.94440 1.50452 0.91019 1.19561 0.97188 0.92369 0.96063 1.21427 0.90766 0.99486 1.01704 1.22576 0.98392 0.86818 1.00247 1.63672 1.11232 1.17987 1.31997 1.23037 0.98594 0.96486 0.90293 1.23178 0.94064 0.98905 1.01743 1.22178 0.85886 0.91496 0.96921 0.88462 1.45071 1.25132 1.53594 1.14896 1.15864 0.79426 0.79075 0.84807 1.90935 1.78520 1.59140 1.17882 1.44469 1.24920 1.52740 1.15118 1.21422 0.86581 0.96833 0.95710 1.23459 1.03818 0.92780 1.03478 1.23408 0.94841 1.03687 1.01110 1.23038 0.88717 0.99962 0.97480 0.92804 0.96675 0.97302 0.92870 0.91973 0.91201 0.94984 0.89600 0.92949 0.90531 0.90485 0.76848 0.76910 0.84334 0.88542 0.87951 0.87823 0.88524 0.92006 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -1.92 5.20 -26.73 -0.14 -2.06 16 11 C 0.05 0.76 4.56 -3.82 -0.02 0.75 16 12 N -0.52 -7.31 5.16 -231.25 -1.19 -8.51 16 13 C 0.04 0.57 5.79 -2.29 -0.01 0.56 16 14 C -0.14 -1.56 6.77 -24.45 -0.17 -1.73 16 15 C 0.14 1.53 3.32 -65.97 -0.22 1.31 16 16 H 0.10 1.24 7.55 -51.93 -0.39 0.85 16 17 N -0.73 -6.45 5.19 -56.76 -0.29 -6.75 16 18 C 0.71 7.63 8.57 -86.92 -0.74 6.89 16 19 O -0.59 -8.91 15.56 5.29 0.08 -8.83 16 20 N -0.72 -5.31 5.57 -58.68 -0.33 -5.63 16 21 C 0.10 0.73 6.43 -67.93 -0.44 0.29 16 22 C -0.20 -1.03 10.46 -26.74 -0.28 -1.31 16 23 C -0.19 -0.93 10.45 -26.73 -0.28 -1.21 16 24 C 0.04 0.41 6.61 -2.84 -0.02 0.39 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 28 H 0.05 1.07 7.49 -51.93 -0.39 0.68 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 31 H 0.03 0.52 7.85 -51.93 -0.41 0.11 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.40 2.36 8.38 -40.82 -0.34 2.01 16 37 H 0.40 1.77 8.84 -40.82 -0.36 1.41 16 38 H 0.14 1.24 7.40 -51.93 -0.38 0.86 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.06 0.69 7.55 -51.93 -0.39 0.29 16 44 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -33.99 355.62 -10.74 -44.73 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.62 Total: -0.14 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.86 Total: -10.09 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -1.04 Total: -48.39 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.99 -10.74 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355133259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.765 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds