Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46893 * 109.47444 * 2 1 4 4 C 1.46901 * 111.00297 * 298.11825 * 3 2 1 5 5 C 1.50698 * 109.46768 * 292.91915 * 4 3 2 6 6 H 1.07998 * 120.00199 * 354.95110 * 5 4 3 7 7 C 1.37883 * 119.99820 * 174.95512 * 5 4 3 8 8 N 1.31513 * 119.99766 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99928 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46767 * 60.00334 * 9 7 5 11 11 H 1.48499 * 109.46816 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47257 * 299.99981 * 9 7 5 13 13 C 1.46906 * 111.00240 * 62.07234 * 3 2 1 14 14 C 1.50699 * 109.46928 * 66.04538 * 13 3 2 15 15 N 1.31131 * 126.55007 * 90.25420 * 14 13 3 16 16 C 1.34501 * 105.61277 * 180.11781 * 15 14 13 17 17 C 1.50704 * 126.28704 * 179.90106 * 16 15 14 18 18 C 1.53000 * 109.47343 * 269.71785 * 17 16 15 19 19 C 1.53001 * 109.47055 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.46621 * 65.00223 * 19 18 17 21 21 C 1.52995 * 109.46922 * 185.00214 * 19 18 17 22 22 N 1.29946 * 107.42305 * 359.64838 * 16 15 14 23 23 O 1.21296 * 110.25234 * 0.21803 * 22 16 15 24 24 H 1.08997 * 109.47308 * 179.64558 * 1 2 3 25 25 H 1.09000 * 109.47304 * 299.65114 * 1 2 3 26 26 H 1.09002 * 109.46874 * 59.64757 * 1 2 3 27 27 H 1.09001 * 109.47178 * 239.99606 * 2 1 3 28 28 H 1.09004 * 109.46837 * 120.00418 * 2 1 3 29 29 H 1.09001 * 109.46768 * 52.91235 * 4 3 2 30 30 H 1.09003 * 109.47512 * 172.91494 * 4 3 2 31 31 H 0.97006 * 119.99997 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.46799 * 306.04742 * 13 3 2 33 33 H 1.08999 * 109.47464 * 186.04650 * 13 3 2 34 34 H 1.09000 * 109.46639 * 149.71576 * 17 16 15 35 35 H 1.09000 * 109.46687 * 29.72368 * 17 16 15 36 36 H 1.08997 * 109.47226 * 300.00091 * 18 17 16 37 37 H 1.09007 * 109.46888 * 59.99869 * 18 17 16 38 38 H 1.08999 * 109.46961 * 305.00211 * 19 18 17 39 39 H 1.08995 * 109.47380 * 299.99560 * 20 19 18 40 40 H 1.08999 * 109.47463 * 60.00295 * 20 19 18 41 41 H 1.09003 * 109.46777 * 179.97438 * 20 19 18 42 42 H 1.08997 * 109.47567 * 60.00183 * 21 19 18 43 43 H 1.09003 * 109.47175 * 180.02562 * 21 19 18 44 44 H 1.09002 * 109.47393 * 300.00317 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5859 2.0968 -1.2096 5 6 2.2654 1.4995 -2.4148 6 1 3.0115 0.7292 -2.2876 7 6 1.9345 1.9367 -3.6799 8 7 1.0256 2.8745 -3.8348 9 14 2.7774 1.1968 -5.1738 10 1 2.5131 -0.2638 -5.2184 11 1 2.2476 1.8331 -6.4066 12 1 4.2407 1.4327 -5.0841 13 6 1.5896 2.0954 1.2117 14 6 2.2533 1.4805 2.4169 15 7 3.4033 1.8323 2.9396 16 6 3.5901 1.0120 3.9890 17 6 4.7739 1.0121 4.9216 18 6 5.8472 0.0637 4.3835 19 6 7.0493 0.0644 5.3300 20 6 6.6341 -0.5195 6.6819 21 6 8.1711 -0.7856 4.7301 22 7 2.5597 0.2229 4.0542 23 8 1.7800 0.4757 3.1601 24 1 -0.3634 -1.0276 -0.0064 25 1 -0.3634 0.5084 0.8931 26 1 -0.3633 0.5193 -0.8868 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5053 2.0033 -1.3182 30 1 1.8529 3.1503 -1.1267 31 1 0.7931 3.1823 -4.7249 32 1 0.5072 2.0175 1.3137 33 1 1.8729 3.1453 1.1372 34 1 4.4576 0.6794 5.9102 35 1 5.1817 2.0206 4.9908 36 1 5.4394 -0.9447 4.3142 37 1 6.1634 0.3965 3.3948 38 1 7.4021 1.0863 5.4684 39 1 5.8350 0.0861 7.1092 40 1 6.2813 -1.5415 6.5434 41 1 7.4907 -0.5194 7.3561 42 1 8.4669 -0.3697 3.7670 43 1 9.0274 -0.7855 5.4046 44 1 7.8183 -1.8076 4.5916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357934479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = 48.724900 kcal Electronic energy + Delta-G solvation = -22187.096418 eV Core-core repulsion = 18949.260741 eV Total energy + Delta-G solvation = -3237.835677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.31654 -37.59342 -37.45242 -35.49626 -33.16726 -32.44025 -30.48919 -29.66225 -27.98756 -27.40991 -25.32040 -25.01893 -23.48239 -22.80083 -21.15349 -20.20166 -19.52736 -17.85759 -17.11720 -16.29027 -15.57834 -15.32526 -15.05513 -14.99790 -14.44431 -14.18026 -13.96869 -13.70617 -13.11537 -12.86190 -12.69731 -12.53655 -12.22271 -12.13081 -11.90391 -11.69212 -11.55562 -11.42941 -11.22522 -11.11043 -10.88983 -10.86323 -10.82345 -10.77012 -10.66003 -10.60873 -10.16251 -9.94878 -9.65031 -9.32436 -8.48404 -7.44084 -6.08223 -4.09452 1.38270 2.45497 3.09124 3.31692 3.35881 3.39212 3.78671 4.19780 4.39101 4.61374 4.66293 4.72377 4.87340 5.04375 5.16030 5.27789 5.29471 5.40133 5.43445 5.46508 5.51702 5.62822 5.67362 5.68787 5.76617 5.82742 5.84931 5.92257 5.98376 6.00556 6.03827 6.15510 6.17343 6.26226 6.33668 6.58405 6.79709 7.12674 7.28638 7.68696 7.90992 8.02865 8.39439 8.42000 8.97179 9.54759 11.02342 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.003567 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.689820 B = 7848.289613 C = 8747.334807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.527 5.527 4 C 0.191 3.809 5 C -0.508 4.508 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.135 3.865 14 C 0.211 3.789 15 N -0.474 5.474 16 C 0.166 3.834 17 C -0.026 4.026 18 C -0.110 4.110 19 C -0.095 4.095 20 C -0.151 4.151 21 C -0.148 4.148 22 N -0.395 5.395 23 O 0.068 5.932 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.011 0.989 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -4.502 17.384 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.252 5.252 4 C 0.067 3.933 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.005 3.995 14 C -0.010 4.010 15 N -0.208 5.208 16 C -0.107 4.107 17 C -0.065 4.065 18 C -0.149 4.149 19 C -0.113 4.113 20 C -0.208 4.208 21 C -0.205 4.205 22 N -0.105 5.105 23 O 0.012 5.988 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.683 -4.769 17.880 19.675 hybrid contribution -0.614 -0.308 -1.036 1.243 sum 6.069 -5.077 16.844 18.610 Atomic orbital electron populations 1.22383 0.98664 1.01627 1.02120 1.22055 0.92719 0.90753 1.01692 1.62418 1.59308 1.02274 1.01235 1.19857 0.95193 0.93824 0.84439 1.21041 1.22123 1.21654 0.89807 0.91870 1.24952 0.95217 0.95189 0.99025 1.69933 1.31746 1.28972 1.23063 0.86553 0.79891 0.79250 0.81698 1.20262 1.21351 1.20135 1.20682 0.96596 0.98315 0.83911 1.29047 0.89802 0.86473 0.95677 1.71932 1.14338 1.26004 1.08498 1.25839 0.97365 0.91183 0.96289 1.20002 0.89039 1.02273 0.95180 1.21634 0.94264 0.99367 0.99643 1.21099 0.95082 1.00134 0.95014 1.21921 1.01210 1.01134 0.96552 1.21834 0.97841 0.99988 1.00866 1.74561 1.03738 1.22897 1.09276 1.85283 1.40507 1.42844 1.30178 0.92934 0.93545 0.90836 0.89318 0.93430 0.97134 0.95102 0.92776 0.91410 0.86750 0.89311 0.88839 0.91608 0.90914 0.90856 0.92463 0.92625 0.92743 0.92429 0.92685 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 9.26 37.16 0.34 -2.85 16 2 C 0.06 1.05 5.71 -3.83 -0.02 1.03 16 3 N -0.53 -10.75 4.68 -237.52 -1.11 -11.86 16 4 C 0.19 4.60 4.53 -4.98 -0.02 4.57 16 5 C -0.51 -13.61 8.40 -34.44 -0.29 -13.90 16 6 H 0.06 1.70 7.38 -52.49 -0.39 1.32 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.14 2.29 5.38 -4.97 -0.03 2.26 16 14 C 0.21 3.58 7.07 -13.06 -0.09 3.49 16 15 N -0.47 -8.22 11.55 -9.87 -0.11 -8.34 16 16 C 0.17 2.56 7.47 -156.36 -1.17 1.40 16 17 C -0.03 -0.30 5.60 -27.88 -0.16 -0.45 16 18 C -0.11 -1.18 4.66 -26.73 -0.12 -1.30 16 19 C -0.09 -0.79 2.92 -90.62 -0.26 -1.06 16 20 C -0.15 -1.13 8.95 37.16 0.33 -0.80 16 21 C -0.15 -1.19 9.19 37.15 0.34 -0.85 16 22 N -0.39 -6.48 12.16 30.90 0.38 -6.10 16 23 O 0.07 1.14 10.67 18.10 0.19 1.33 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.71 6.34 -51.93 -0.33 0.38 16 26 H 0.07 1.41 6.28 -51.93 -0.33 1.08 16 27 H 0.09 1.81 6.99 -51.93 -0.36 1.45 16 28 H 0.05 0.85 6.72 -51.93 -0.35 0.50 16 29 H 0.01 0.27 6.01 -51.93 -0.31 -0.04 16 30 H 0.03 0.79 7.91 -51.93 -0.41 0.38 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.07 1.03 6.07 -51.93 -0.32 0.72 16 33 H 0.11 1.87 7.92 -51.93 -0.41 1.46 16 34 H 0.09 0.87 6.57 -51.93 -0.34 0.53 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -29.14 352.28 -8.13 -37.27 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.25 Total: -1.91 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.25 Total: -6.99 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.11 Total: -51.12 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.19 Total: 1.33 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.14 -8.13 -37.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357934479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.992 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds