Wall clock time and date at job start Tue Mar 31 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46919 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47192 * 300.00277 * 3 2 1 6 6 H 1.48494 * 109.47309 * 60.00346 * 3 2 1 7 7 C 1.37875 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47251 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.46994 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99922 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99728 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99859 * 180.02562 * 13 12 11 16 16 C 1.46510 * 119.99952 * 180.02562 * 15 13 12 17 17 H 1.09000 * 110.76370 * 31.79034 * 16 15 13 18 18 C 1.55141 * 110.70375 * 268.59718 * 16 15 13 19 19 C 1.54901 * 101.65078 * 205.96255 * 18 16 15 20 20 N 1.47840 * 104.79682 * 37.06999 * 19 18 16 21 21 C 1.46908 * 110.99895 * 213.63417 * 20 19 18 22 22 C 1.52995 * 117.49853 * 190.23866 * 21 20 19 23 23 C 1.52997 * 117.49778 * 258.86382 * 21 20 19 24 24 C 1.47442 * 108.56997 * 335.90240 * 20 19 18 25 25 H 0.97010 * 119.99857 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47182 * 60.00579 * 9 7 2 27 27 H 1.09001 * 109.47309 * 300.00681 * 9 7 2 28 28 H 1.09004 * 109.46863 * 60.00684 * 10 9 7 29 29 H 1.08997 * 109.47078 * 300.00204 * 10 9 7 30 30 H 1.08997 * 109.46627 * 60.00139 * 11 10 9 31 31 H 1.09001 * 109.47223 * 300.00588 * 11 10 9 32 32 H 0.96996 * 120.00493 * 0.02562 * 12 11 10 33 33 H 0.97001 * 120.00353 * 359.97438 * 15 13 12 34 34 H 1.09000 * 110.99022 * 324.05375 * 18 16 15 35 35 H 1.09001 * 110.98848 * 87.86677 * 18 16 15 36 36 H 1.09000 * 110.37302 * 278.23946 * 19 18 16 37 37 H 1.09007 * 110.37170 * 155.90139 * 19 18 16 38 38 H 1.09002 * 115.55630 * 44.55561 * 21 20 19 39 39 H 1.09000 * 117.49976 * 0.02562 * 22 21 20 40 40 H 1.09004 * 117.50167 * 214.98025 * 22 21 20 41 41 H 1.09005 * 117.49865 * 145.02479 * 23 21 20 42 42 H 1.09001 * 117.50093 * 359.97438 * 23 21 20 43 43 H 1.08994 * 109.88779 * 120.39613 * 24 20 19 44 44 H 1.08995 * 109.88793 * 241.42496 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1005 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7875 -7.5934 -0.0024 15 7 2.8588 -8.3956 -0.0004 16 6 2.3704 -9.7770 -0.0020 17 1 1.4259 -9.8523 -0.5407 18 6 2.2185 -10.3066 1.4483 19 6 2.3783 -11.8335 1.2420 20 7 3.4062 -11.9665 0.1878 21 6 3.1416 -13.1360 -0.6610 22 6 4.2345 -13.5560 -1.6458 23 6 3.9632 -14.3997 -0.3987 24 6 3.4231 -10.7271 -0.6107 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5570 0.8896 28 1 2.8718 -3.6044 0.8896 29 1 2.8719 -3.6043 -0.8905 30 1 0.8540 -5.0445 -0.8914 31 1 0.8532 -5.0451 0.8885 32 1 3.3859 -5.9234 0.0005 33 1 3.8125 -8.2184 0.0007 34 1 3.0064 -9.9149 2.0916 35 1 1.2337 -10.0678 1.8500 36 1 1.4369 -12.2724 0.9116 37 1 2.7163 -12.3076 2.1636 38 1 2.1054 -13.2651 -0.9739 39 1 5.1501 -12.9648 -1.6637 40 1 3.9175 -13.9615 -2.6067 41 1 3.4676 -15.3604 -0.5390 42 1 4.7004 -14.3633 0.4034 43 1 4.4101 -10.2675 -0.5612 44 1 3.1696 -10.9502 -1.6470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359228437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:14 Heat of formation + Delta-G solvation = -11.766945 kcal Electronic energy + Delta-G solvation = -21241.446244 eV Core-core repulsion = 18000.987443 eV Total energy + Delta-G solvation = -3240.458801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.27877 -39.15602 -36.64386 -35.32622 -33.86337 -33.22157 -31.16537 -29.80442 -28.61352 -26.44325 -23.31225 -22.74174 -22.63956 -21.39455 -20.80594 -20.54950 -20.38339 -18.14769 -17.10019 -16.60717 -16.27567 -15.58076 -15.41379 -14.87775 -14.50301 -14.39083 -14.19659 -13.86348 -13.67646 -13.38665 -12.91805 -12.50675 -12.28390 -12.04829 -11.88331 -11.84065 -11.77508 -11.62248 -11.13269 -10.91713 -10.79178 -10.72133 -10.56402 -10.48917 -10.10087 -9.85762 -9.44190 -9.20568 -9.10794 -8.78297 -8.60881 -8.37222 -6.01649 -4.04631 2.73902 3.30005 3.31907 3.37433 3.38173 3.41052 3.44173 4.22273 4.36385 4.44220 4.48011 4.53514 4.62481 4.73678 4.91391 4.97140 5.05806 5.18193 5.27338 5.34178 5.39142 5.49870 5.56452 5.63855 5.70378 5.77780 5.79346 5.82123 5.87455 6.19183 6.43896 6.49859 6.53488 6.63018 6.69612 6.81234 7.02764 7.07598 7.64516 7.77130 7.97438 8.14579 8.38403 8.74684 9.02332 9.59532 11.09637 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.054511 B = 0.002152 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.538723 B =13010.105100 C =13217.674492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.593 6.593 15 N -0.741 5.741 16 C 0.146 3.854 17 H 0.096 0.904 18 C -0.143 4.143 19 C 0.047 3.953 20 N -0.499 5.499 21 C -0.006 4.006 22 C -0.170 4.170 23 C -0.162 4.162 24 C 0.040 3.960 25 H 0.260 0.740 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.394 0.606 33 H 0.396 0.604 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.293 -27.515 -0.532 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.472 6.472 15 N -0.397 5.397 16 C 0.038 3.962 17 H 0.115 0.885 18 C -0.182 4.182 19 C -0.081 4.081 20 N -0.224 5.224 21 C -0.115 4.115 22 C -0.208 4.208 23 C -0.199 4.199 24 C -0.089 4.089 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.227 0.773 33 H 0.230 0.770 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.490 -27.647 -0.319 28.922 hybrid contribution 0.527 1.254 -0.363 1.408 sum 9.017 -26.392 -0.682 27.898 Atomic orbital electron populations 1.69981 1.06048 1.26556 1.50662 1.25039 0.94869 0.99325 0.95319 0.86524 0.80032 0.83759 0.77588 1.19773 1.21015 1.21008 1.21242 0.93029 0.90935 1.50766 0.92592 1.19037 0.93873 0.90834 0.97702 1.21891 0.99783 0.93324 1.00831 1.21510 0.91292 0.84151 1.01862 1.45388 1.10476 1.04430 1.79214 1.16022 0.85306 0.80800 0.77805 1.90915 1.14153 1.84111 1.57971 1.45044 1.08888 1.04635 1.81148 1.21949 0.98013 0.80024 0.96182 0.88549 1.23172 1.03311 0.94333 0.97402 1.22992 0.93340 0.96249 0.95472 1.63390 1.46579 1.01148 1.11265 1.22650 0.95304 0.93192 1.00341 1.23021 1.00111 1.03548 0.94082 1.23020 1.03004 0.94026 0.99893 1.22997 0.99381 0.89720 0.96759 0.92990 0.96234 0.96237 0.92756 0.92769 0.91977 0.91974 0.77291 0.77009 0.90230 0.90026 0.93052 0.89825 0.89342 0.88246 0.88675 0.88786 0.88141 0.89965 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.14 2.42 5.67 -4.04 -0.02 2.40 16 12 N -0.74 -10.73 5.56 -65.23 -0.36 -11.09 16 13 C 0.70 10.65 8.57 -86.92 -0.74 9.90 16 14 O -0.59 -11.61 15.99 5.29 0.08 -11.52 16 15 N -0.74 -7.95 5.18 -56.89 -0.29 -8.25 16 16 C 0.15 1.46 3.31 -66.10 -0.22 1.24 16 17 H 0.10 1.17 7.55 -51.93 -0.39 0.78 16 18 C -0.14 -1.33 6.76 -24.60 -0.17 -1.50 16 19 C 0.05 0.38 6.73 -2.30 -0.02 0.36 16 20 N -0.50 -4.05 5.31 -223.30 -1.18 -5.24 16 21 C -0.01 -0.04 4.67 -67.71 -0.32 -0.36 16 22 C -0.17 -1.06 10.15 -26.73 -0.27 -1.33 16 23 C -0.16 -1.00 10.46 -26.73 -0.28 -1.28 16 24 C 0.04 0.32 6.46 -2.84 -0.02 0.30 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.39 4.51 8.49 -40.82 -0.35 4.16 16 33 H 0.40 3.13 8.38 -40.82 -0.34 2.78 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.40 7.68 -51.93 -0.40 0.00 16 37 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.09 0.64 7.95 -51.93 -0.41 0.22 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.61 7.72 -51.93 -0.40 0.20 16 44 H 0.07 0.53 7.52 -51.93 -0.39 0.13 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -32.83 360.95 -11.07 -43.89 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.72 Total: 2.13 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.74 Total: -5.72 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -1.11 Total: -50.72 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.83 -11.07 -43.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359228437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.127 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds