Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99517 * 2 1 4 4 H 1.48509 * 109.46584 * 239.99777 * 3 2 1 5 5 H 1.48496 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47302 * 120.00296 * 3 2 1 7 7 C 1.37871 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46837 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46724 * 180.02562 * 10 9 7 12 12 N 1.46512 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99731 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00340 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99780 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00460 * 179.97438 * 15 13 12 17 17 H 1.09007 * 110.26759 * 327.09431 * 16 15 13 18 18 C 1.54594 * 110.30539 * 89.28301 * 16 15 13 19 19 C 1.54929 * 102.91992 * 96.96560 * 18 16 15 20 20 N 1.48530 * 103.22861 * 37.41329 * 19 18 16 21 21 C 1.46902 * 110.99994 * 200.27899 * 20 19 18 22 22 C 1.52993 * 117.50385 * 255.25752 * 21 20 19 23 23 C 1.52995 * 60.00074 * 252.50997 * 22 21 20 24 24 C 1.47900 * 105.81776 * 320.79071 * 20 19 18 25 25 H 0.96999 * 120.00401 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46792 * 60.00262 * 9 7 2 27 27 H 1.08992 * 109.47290 * 299.99744 * 9 7 2 28 28 H 1.09002 * 109.46841 * 299.99992 * 10 9 7 29 29 H 1.08993 * 109.47311 * 60.00064 * 10 9 7 30 30 H 1.09002 * 109.47042 * 299.99363 * 11 10 9 31 31 H 1.08994 * 109.47991 * 60.00069 * 11 10 9 32 32 H 0.96993 * 119.99646 * 359.97438 * 12 11 10 33 33 H 0.97000 * 120.00292 * 0.02562 * 15 13 12 34 34 H 1.09010 * 110.72077 * 215.31901 * 18 16 15 35 35 H 1.08998 * 110.72534 * 338.60312 * 18 16 15 36 36 H 1.09004 * 110.66858 * 278.97481 * 19 18 16 37 37 H 1.09002 * 110.81134 * 155.91674 * 19 18 16 38 38 H 1.09009 * 115.54747 * 40.96578 * 21 20 19 39 39 H 1.09007 * 117.49510 * 0.02562 * 22 21 20 40 40 H 1.09000 * 117.50407 * 145.01727 * 22 21 20 41 41 H 1.09003 * 117.49663 * 252.51096 * 23 22 21 42 42 H 1.09005 * 117.50509 * 107.48852 * 23 22 21 43 43 H 1.09001 * 109.91852 * 265.97581 * 24 20 19 44 44 H 1.09007 * 109.91535 * 144.68333 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4326 -6.1006 0.0049 13 6 1.9834 -7.3712 0.0061 14 8 0.7880 -7.5935 0.0064 15 7 2.8592 -8.3956 0.0071 16 6 2.3710 -9.7769 0.0090 17 1 1.4359 -9.8461 0.5650 18 6 2.1746 -10.2785 -1.4400 19 6 3.4873 -11.0525 -1.7196 20 7 3.7789 -11.7080 -0.4191 21 6 5.1950 -12.0875 -0.3267 22 6 5.5420 -13.5682 -0.4935 23 6 5.6275 -12.9133 0.8865 24 6 3.4271 -10.7162 0.6202 25 1 -0.4851 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6249 -2.5564 0.8919 28 1 2.8721 -3.6050 -0.8873 29 1 2.8721 -3.6035 0.8926 30 1 0.8536 -5.0443 0.8932 31 1 0.8541 -5.0455 -0.8868 32 1 3.3862 -5.9232 0.0051 33 1 3.8129 -8.2183 0.0073 34 1 1.3134 -10.9437 -1.5045 35 1 2.0676 -9.4394 -2.1275 36 1 4.2884 -10.3654 -1.9924 37 1 3.3386 -11.7975 -2.5012 38 1 5.9039 -11.3571 -0.7169 39 1 4.7195 -14.2608 -0.6722 40 1 6.4792 -13.8124 -0.9937 41 1 6.6209 -12.7264 1.2943 42 1 4.8612 -13.1750 1.6163 43 1 4.3116 -10.1460 0.9039 44 1 3.0132 -11.2229 1.4921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359228439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = -10.439619 kcal Electronic energy + Delta-G solvation = -21349.025483 eV Core-core repulsion = 18108.624240 eV Total energy + Delta-G solvation = -3240.401243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33722 -39.09792 -36.69052 -35.32124 -33.75705 -33.20811 -31.17107 -29.79567 -28.69516 -26.46778 -23.30063 -22.75629 -22.73756 -21.41260 -20.69815 -20.62713 -20.20978 -18.11968 -17.06775 -16.72460 -16.30540 -15.46341 -15.39747 -15.12008 -14.53764 -14.38038 -14.12159 -13.99938 -13.71890 -13.18974 -12.86627 -12.36087 -12.26315 -12.15116 -11.89118 -11.81589 -11.66572 -11.57114 -11.29928 -10.88557 -10.82177 -10.72040 -10.62201 -10.43432 -10.10136 -9.85701 -9.44279 -9.23144 -9.13753 -8.87764 -8.61736 -8.36833 -6.01507 -4.04789 2.74968 3.30184 3.31756 3.36598 3.37269 3.38442 3.46751 4.19973 4.36566 4.43109 4.45569 4.51629 4.64333 4.74635 4.91897 4.94084 5.12206 5.15329 5.26091 5.33963 5.37435 5.51421 5.57518 5.65572 5.70276 5.77920 5.81348 5.82866 5.86602 6.18297 6.26365 6.52786 6.56768 6.62354 6.66447 6.79907 7.02187 7.05950 7.63682 7.76846 7.97181 8.13449 8.37992 8.74637 9.01635 9.59196 11.09673 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.002271 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.812698 B =12323.977806 C =12687.182038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.591 6.591 15 N -0.746 5.746 16 C 0.153 3.847 17 H 0.101 0.899 18 C -0.134 4.134 19 C 0.039 3.961 20 N -0.489 5.489 21 C -0.009 4.009 22 C -0.161 4.161 23 C -0.170 4.170 24 C 0.034 3.966 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.393 0.607 33 H 0.392 0.608 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.996 -26.012 -0.729 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.396 5.396 13 C 0.400 3.600 14 O -0.469 6.469 15 N -0.403 5.403 16 C 0.047 3.953 17 H 0.119 0.881 18 C -0.173 4.173 19 C -0.089 4.089 20 N -0.213 5.213 21 C -0.118 4.118 22 C -0.199 4.199 23 C -0.208 4.208 24 C -0.094 4.094 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.226 0.774 33 H 0.225 0.775 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.393 -26.548 -0.653 28.517 hybrid contribution 1.932 1.898 -0.116 2.711 sum 12.325 -24.650 -0.769 27.570 Atomic orbital electron populations 1.69958 1.06035 1.26799 1.50437 1.25035 0.94874 0.99295 0.95299 0.86636 0.79549 0.83105 0.78557 1.20270 1.21267 1.20264 1.21162 0.92930 0.90964 1.51072 0.92731 1.19027 0.93852 0.90784 0.97703 1.21889 0.99787 0.93368 1.00778 1.21513 0.91282 0.84127 1.01893 1.45405 1.10417 1.04496 1.79280 1.16023 0.85343 0.80759 0.77857 1.90924 1.14069 1.84074 1.57786 1.45312 1.08679 1.04970 1.81293 1.21567 0.97976 0.79309 0.96458 0.88081 1.22957 0.97579 1.00075 0.96735 1.23239 0.96854 0.96848 0.91921 1.64621 1.16619 1.37124 1.02986 1.22613 0.89845 0.94844 1.04483 1.23011 1.02788 0.94713 0.99356 1.23015 1.02469 1.03668 0.91621 1.23103 0.97704 0.92748 0.95833 0.92863 0.96230 0.96236 0.92817 0.92794 0.91946 0.91951 0.77402 0.77474 0.89813 0.90213 0.93635 0.89799 0.89436 0.88088 0.88788 0.88694 0.88227 0.92741 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.14 2.41 5.67 -4.04 -0.02 2.39 16 12 N -0.74 -10.70 5.56 -65.22 -0.36 -11.07 16 13 C 0.70 10.57 8.56 -86.93 -0.74 9.82 16 14 O -0.59 -11.49 15.99 5.29 0.08 -11.41 16 15 N -0.75 -7.93 5.06 -57.35 -0.29 -8.22 16 16 C 0.15 1.53 3.34 -66.58 -0.22 1.31 16 17 H 0.10 1.21 7.56 -51.93 -0.39 0.81 16 18 C -0.13 -1.26 6.78 -24.88 -0.17 -1.43 16 19 C 0.04 0.31 6.56 -1.90 -0.01 0.29 16 20 N -0.49 -3.92 5.42 -222.51 -1.20 -5.13 16 21 C -0.01 -0.06 4.85 -67.72 -0.33 -0.39 16 22 C -0.16 -0.99 10.46 -26.74 -0.28 -1.27 16 23 C -0.17 -1.04 10.22 -26.74 -0.27 -1.31 16 24 C 0.03 0.27 6.28 -2.76 -0.02 0.26 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.39 4.50 8.49 -40.82 -0.35 4.15 16 33 H 0.39 3.14 8.35 -40.82 -0.34 2.80 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 36 H 0.05 0.35 7.91 -51.93 -0.41 -0.06 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.59 7.99 -51.92 -0.41 0.17 16 39 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.40 7.26 -51.93 -0.38 0.02 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -32.56 361.21 -11.11 -43.67 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.74 Total: 2.13 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.76 Total: -5.77 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -1.12 Total: -50.54 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.56 -11.11 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359228439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.229 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds