Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99517 * 2 1 4 4 H 1.48509 * 109.46584 * 239.99777 * 3 2 1 5 5 H 1.48496 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47302 * 120.00296 * 3 2 1 7 7 C 1.37871 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46837 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46724 * 180.02562 * 10 9 7 12 12 N 1.46512 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99731 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00340 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99780 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00460 * 179.97438 * 15 13 12 17 17 H 1.09007 * 110.26759 * 327.09431 * 16 15 13 18 18 C 1.54594 * 110.30539 * 89.28301 * 16 15 13 19 19 C 1.54929 * 102.91992 * 96.96560 * 18 16 15 20 20 N 1.48530 * 103.22861 * 37.41329 * 19 18 16 21 21 C 1.46902 * 110.99994 * 200.27899 * 20 19 18 22 22 C 1.52993 * 117.50385 * 255.25752 * 21 20 19 23 23 C 1.52995 * 60.00074 * 252.50997 * 22 21 20 24 24 C 1.47900 * 105.81776 * 320.79071 * 20 19 18 25 25 H 0.96999 * 120.00401 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46792 * 60.00262 * 9 7 2 27 27 H 1.08992 * 109.47290 * 299.99744 * 9 7 2 28 28 H 1.09002 * 109.46841 * 299.99992 * 10 9 7 29 29 H 1.08993 * 109.47311 * 60.00064 * 10 9 7 30 30 H 1.09002 * 109.47042 * 299.99363 * 11 10 9 31 31 H 1.08994 * 109.47991 * 60.00069 * 11 10 9 32 32 H 0.96993 * 119.99646 * 359.97438 * 12 11 10 33 33 H 0.97000 * 120.00292 * 0.02562 * 15 13 12 34 34 H 1.09010 * 110.72077 * 215.31901 * 18 16 15 35 35 H 1.08998 * 110.72534 * 338.60312 * 18 16 15 36 36 H 1.09004 * 110.66858 * 278.97481 * 19 18 16 37 37 H 1.09002 * 110.81134 * 155.91674 * 19 18 16 38 38 H 1.09009 * 115.54747 * 40.96578 * 21 20 19 39 39 H 1.09007 * 117.49510 * 0.02562 * 22 21 20 40 40 H 1.09000 * 117.50407 * 145.01727 * 22 21 20 41 41 H 1.09003 * 117.49663 * 252.51096 * 23 22 21 42 42 H 1.09005 * 117.50509 * 107.48852 * 23 22 21 43 43 H 1.09001 * 109.91852 * 265.97581 * 24 20 19 44 44 H 1.09007 * 109.91535 * 144.68333 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4326 -6.1006 0.0049 13 6 1.9834 -7.3712 0.0061 14 8 0.7880 -7.5935 0.0064 15 7 2.8592 -8.3956 0.0071 16 6 2.3710 -9.7769 0.0090 17 1 1.4359 -9.8461 0.5650 18 6 2.1746 -10.2785 -1.4400 19 6 3.4873 -11.0525 -1.7196 20 7 3.7789 -11.7080 -0.4191 21 6 5.1950 -12.0875 -0.3267 22 6 5.5420 -13.5682 -0.4935 23 6 5.6275 -12.9133 0.8865 24 6 3.4271 -10.7162 0.6202 25 1 -0.4851 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6249 -2.5564 0.8919 28 1 2.8721 -3.6050 -0.8873 29 1 2.8721 -3.6035 0.8926 30 1 0.8536 -5.0443 0.8932 31 1 0.8541 -5.0455 -0.8868 32 1 3.3862 -5.9232 0.0051 33 1 3.8129 -8.2183 0.0073 34 1 1.3134 -10.9437 -1.5045 35 1 2.0676 -9.4394 -2.1275 36 1 4.2884 -10.3654 -1.9924 37 1 3.3386 -11.7975 -2.5012 38 1 5.9039 -11.3571 -0.7169 39 1 4.7195 -14.2608 -0.6722 40 1 6.4792 -13.8124 -0.9937 41 1 6.6209 -12.7264 1.2943 42 1 4.8612 -13.1750 1.6163 43 1 4.3116 -10.1460 0.9039 44 1 3.0132 -11.2229 1.4921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359228439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = -33.654610 kcal Electronic energy + Delta-G solvation = -21350.032161 eV Core-core repulsion = 18108.624240 eV Total energy + Delta-G solvation = -3241.407921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35156 -39.96417 -37.46470 -36.77592 -35.20051 -34.64500 -32.89125 -30.55511 -29.62405 -28.18975 -25.02055 -23.42508 -23.27653 -22.43478 -22.28456 -21.31555 -21.26734 -19.31079 -18.52830 -17.72982 -17.48978 -16.77548 -16.55502 -16.27000 -15.86341 -15.47933 -15.37716 -15.17424 -14.61866 -14.24695 -13.82070 -13.72725 -13.65364 -13.48097 -12.99483 -12.86207 -12.69210 -12.54709 -12.40392 -12.36515 -12.28285 -12.05828 -11.66239 -11.63843 -11.32295 -11.29547 -11.14666 -10.94626 -10.54216 -10.39672 -9.80814 -9.46687 -8.18694 -6.30390 1.41860 1.45065 1.52857 1.65482 2.12222 2.42366 2.79653 2.89795 3.14738 3.32930 3.49316 3.76494 4.00450 4.04978 4.16332 4.17335 4.23858 4.27554 4.32505 4.41923 4.55107 4.56570 4.79156 4.83333 4.86200 4.93585 4.96307 4.99449 5.04280 5.07400 5.14455 5.17402 5.33528 5.45180 5.47052 5.54458 5.71681 5.81921 5.84799 5.96991 6.10690 6.23016 6.86708 7.09010 7.39019 7.57035 8.93129 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.002271 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.812698 B =12323.977806 C =12687.182038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.699 3.301 14 O -0.638 6.638 15 N -0.724 5.724 16 C 0.151 3.849 17 H 0.078 0.922 18 C -0.132 4.132 19 C 0.047 3.953 20 N -0.497 5.497 21 C -0.019 4.019 22 C -0.159 4.159 23 C -0.166 4.166 24 C 0.044 3.956 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.411 0.589 33 H 0.409 0.591 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.013 -26.507 -0.705 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.399 3.601 14 O -0.519 6.519 15 N -0.381 5.381 16 C 0.045 3.955 17 H 0.097 0.903 18 C -0.171 4.171 19 C -0.081 4.081 20 N -0.221 5.221 21 C -0.128 4.128 22 C -0.197 4.197 23 C -0.203 4.203 24 C -0.084 4.084 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.248 0.752 33 H 0.246 0.754 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.493 -27.080 -0.629 30.261 hybrid contribution 0.968 1.971 -0.126 2.199 sum 14.460 -25.109 -0.755 28.985 Atomic orbital electron populations 1.70111 1.07936 1.27846 1.51606 1.26046 0.95777 1.03611 0.94825 0.85455 0.78163 0.77877 0.79260 1.19019 1.21223 1.19005 1.21649 0.93747 0.91983 1.50538 0.91490 1.18947 0.94471 0.92964 0.95089 1.21583 0.98418 0.91674 1.02105 1.21068 0.91342 0.84635 1.00426 1.45034 1.10816 1.03566 1.79144 1.16158 0.85098 0.81356 0.77531 1.90899 1.16405 1.84759 1.59845 1.45098 1.09013 1.04274 1.79701 1.21618 0.97949 0.79117 0.96853 0.90348 1.22885 0.98627 0.99714 0.95915 1.23173 0.95897 0.96864 0.92143 1.64624 1.17732 1.36982 1.02804 1.22698 0.89162 0.95438 1.05505 1.23055 1.03108 0.93965 0.99557 1.23060 1.02918 1.03010 0.91360 1.23005 0.97328 0.92343 0.95725 0.92829 0.98959 0.98959 0.91368 0.91336 0.93561 0.93572 0.75225 0.75427 0.90137 0.91644 0.92952 0.89258 0.88782 0.88825 0.87494 0.87426 0.88774 0.91502 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.15 5.38 5.67 86.38 0.49 5.87 16 12 N -0.73 -20.20 5.56 -478.53 -2.66 -22.86 16 13 C 0.70 20.71 8.56 179.06 1.53 22.25 16 14 O -0.64 -25.32 15.99 -4.00 -0.06 -25.39 16 15 N -0.72 -14.42 5.06 -453.62 -2.30 -16.72 16 16 C 0.15 2.90 3.34 45.87 0.15 3.05 16 17 H 0.08 1.91 7.56 -2.38 -0.02 1.89 16 18 C -0.13 -2.43 6.78 31.80 0.22 -2.21 16 19 C 0.05 0.66 6.56 86.65 0.57 1.23 16 20 N -0.50 -7.08 5.42 -857.89 -4.65 -11.72 16 21 C -0.02 -0.22 4.85 44.91 0.22 0.00 16 22 C -0.16 -1.62 10.46 30.59 0.32 -1.30 16 23 C -0.17 -1.65 10.22 30.59 0.31 -1.33 16 24 C 0.04 0.63 6.28 86.44 0.54 1.17 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.47 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.41 8.37 8.49 -92.71 -0.79 7.58 16 33 H 0.41 5.49 8.35 -92.71 -0.77 4.72 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.06 1.40 8.05 -2.39 -0.02 1.38 16 36 H 0.05 0.68 7.91 -2.38 -0.02 0.66 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 0.99 7.99 -2.38 -0.02 0.97 16 39 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.07 0.80 7.26 -2.39 -0.02 0.78 16 44 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -71.27 361.21 -2.57 -73.84 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -0.58 Total: 17.45 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.36 Total: -3.36 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -9.32 Total: -108.31 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.06 Total: -25.39 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.27 -2.57 -73.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359228439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.187 kcal (2) G-P(sol) polarization free energy of solvation -71.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds