Wall clock time and date at job start Tue Mar 31 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46839 * 111.00249 * 2 1 4 4 C 1.53030 * 109.52587 * 185.83999 * 3 2 1 5 5 C 1.53120 * 109.27820 * 300.82336 * 4 3 2 6 6 N 1.46504 * 109.52425 * 177.55609 * 5 4 3 7 7 C 1.34770 * 120.00150 * 154.99837 * 6 5 4 8 8 O 1.21585 * 120.00054 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00251 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99925 * 180.27750 * 9 7 6 11 11 C 1.53004 * 109.46739 * 178.21159 * 10 9 7 12 12 C 1.50692 * 115.55352 * 65.12262 * 11 10 9 13 13 H 1.07995 * 120.00193 * 265.41134 * 12 11 10 14 14 C 1.37879 * 119.99934 * 85.40862 * 12 11 10 15 15 N 1.31511 * 120.00128 * 353.56337 * 14 12 11 16 16 Si 1.86801 * 120.00225 * 173.56516 * 14 12 11 17 17 H 1.48495 * 109.47197 * 59.99668 * 16 14 12 18 18 H 1.48502 * 109.47361 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46765 * 300.00251 * 16 14 12 20 20 C 1.53008 * 117.49451 * 279.44994 * 11 10 9 21 21 C 1.53002 * 117.49601 * 210.79511 * 11 10 9 22 22 C 1.53112 * 109.16064 * 57.65153 * 5 4 3 23 23 C 1.46844 * 110.99832 * 124.21428 * 2 1 3 24 24 H 1.08999 * 109.47490 * 59.99415 * 1 2 3 25 25 H 1.09001 * 109.47702 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46931 * 300.00255 * 1 2 3 27 27 H 1.08997 * 109.46382 * 65.82395 * 3 2 1 28 28 H 1.09003 * 109.45642 * 305.85002 * 3 2 1 29 29 H 1.08994 * 109.51073 * 180.87818 * 4 3 2 30 30 H 1.09004 * 109.53684 * 60.78177 * 4 3 2 31 31 H 1.08998 * 109.52126 * 297.67710 * 5 4 3 32 32 H 0.97007 * 119.99823 * 334.99941 * 6 5 4 33 33 H 0.96998 * 119.99605 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.46866 * 298.20738 * 10 9 7 35 35 H 1.08996 * 109.47239 * 58.20744 * 10 9 7 36 36 H 0.97003 * 120.00760 * 185.06267 * 15 14 12 37 37 H 1.08996 * 117.50090 * 0.02562 * 20 11 10 38 38 H 1.08999 * 117.49010 * 145.02348 * 20 11 10 39 39 H 1.08996 * 117.49775 * 214.98139 * 21 11 10 40 40 H 1.09005 * 117.49534 * 359.97353 * 21 11 10 41 41 H 1.08997 * 109.50683 * 62.29189 * 22 5 4 42 42 H 1.09008 * 109.50219 * 182.40527 * 22 5 4 43 43 H 1.09002 * 109.46050 * 294.17234 * 23 2 1 44 44 H 1.08998 * 109.46858 * 54.14116 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5368 1.0143 6 7 5.5716 0.4486 0.8478 7 6 6.3631 0.2631 1.9228 8 8 5.8714 0.1695 3.0308 9 7 7.6997 0.1825 1.7697 10 6 8.5596 -0.0252 2.9375 11 6 10.0181 -0.1236 2.4858 12 6 10.5963 1.1282 1.8781 13 1 10.5886 1.2615 0.8064 14 6 11.1351 2.1035 2.6902 15 7 11.0318 2.0017 3.9973 16 14 12.0118 3.5694 1.9340 17 1 11.0698 4.3118 1.0584 18 1 12.4971 4.4667 3.0132 19 1 13.1660 3.0947 1.1292 20 6 10.4956 -1.4658 1.9274 21 6 10.9557 -1.0056 3.3129 22 6 3.5181 -0.8715 1.0208 23 6 1.9952 -0.7709 1.1337 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7325 1.8607 0.9375 28 1 1.5635 1.9255 -0.8331 29 1 3.9100 2.3510 -0.1311 30 1 3.7819 0.8570 -1.0907 31 1 3.8897 1.0359 1.9559 32 1 5.9640 0.5237 -0.0362 33 1 8.0920 0.2576 0.8857 34 1 8.4478 0.8135 3.6247 35 1 8.2720 -0.9481 3.4409 36 1 11.3452 2.7221 4.5663 37 1 9.7706 -2.2783 1.8814 38 1 11.2282 -1.4430 1.1206 39 1 11.9908 -0.6804 3.4171 40 1 10.5335 -1.5153 4.1790 41 1 3.7813 -1.3837 0.0953 42 1 3.9098 -1.4304 1.8707 43 1 1.7324 -0.2709 2.0660 44 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362341509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:40 Heat of formation + Delta-G solvation = -10.328473 kcal Electronic energy + Delta-G solvation = -22373.285719 eV Core-core repulsion = 19132.889295 eV Total energy + Delta-G solvation = -3240.396424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86229 -38.59213 -36.73481 -34.86015 -33.22370 -31.96582 -31.29369 -31.01388 -26.83928 -25.80844 -24.90346 -23.33687 -22.57461 -21.18016 -20.20941 -19.95545 -19.34706 -17.60978 -16.62251 -15.92999 -15.44456 -15.29032 -14.95237 -14.71305 -14.57425 -14.10787 -13.94006 -13.65749 -13.42412 -13.01536 -12.61608 -12.60829 -12.56797 -11.97327 -11.72502 -11.56355 -11.39451 -11.30736 -10.98913 -10.92856 -10.82076 -10.56417 -10.53292 -10.25127 -9.69497 -9.47683 -8.95537 -8.77713 -8.57087 -8.48027 -8.23209 -7.93443 -6.06206 -4.14889 3.24361 3.27403 3.33521 3.34621 3.70853 3.83795 4.36031 4.60023 4.74255 4.80722 4.93455 5.01822 5.15255 5.21861 5.23230 5.30353 5.37568 5.41635 5.52459 5.57112 5.59415 5.65466 5.83479 5.93570 6.04660 6.11100 6.28120 6.36749 6.49731 6.62559 6.71648 6.80275 6.84689 6.88175 6.89605 7.10898 7.37430 7.44917 7.49852 7.65115 7.82559 8.35979 8.71767 8.85695 9.26113 9.51631 11.01609 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.003500 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.839864 B = 7997.696503 C = 8605.000395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.060 3.940 4 C -0.124 4.124 5 C 0.166 3.834 6 N -0.750 5.750 7 C 0.698 3.302 8 O -0.605 6.605 9 N -0.721 5.721 10 C 0.183 3.817 11 C 0.029 3.971 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.874 5.874 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.211 4.211 21 C -0.148 4.148 22 C -0.127 4.127 23 C 0.058 3.942 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.024 0.976 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.393 0.607 33 H 0.395 0.605 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 -3.132 -8.918 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.163 4.163 5 C 0.060 3.940 6 N -0.405 5.405 7 C 0.398 3.602 8 O -0.484 6.484 9 N -0.373 5.373 10 C 0.059 3.941 11 C 0.028 3.972 12 C -0.539 4.539 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.186 4.186 22 C -0.166 4.166 23 C -0.070 4.070 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.636 -3.371 -8.085 18.801 hybrid contribution 0.615 1.318 -0.356 1.497 sum -16.022 -2.052 -8.441 18.225 Atomic orbital electron populations 1.22343 0.87357 1.02056 1.00578 1.61963 1.07505 1.13780 1.43768 1.22026 0.94865 0.89195 1.00799 1.21872 0.94548 1.00793 0.99052 1.20703 0.78879 0.95416 0.99015 1.45159 1.06125 1.80226 1.08987 1.16060 0.81819 0.78086 0.84229 1.90859 1.74556 1.59030 1.23999 1.45150 1.03697 1.76289 1.12146 1.20831 0.88454 0.99196 0.85613 1.19031 0.89884 0.89426 0.98853 1.20296 1.39183 1.01747 0.92638 0.92297 1.24983 0.95308 0.97951 0.94775 1.69963 1.45805 1.32323 1.02917 0.86693 0.80235 0.82403 0.78831 1.20286 1.21295 1.20224 1.23018 1.04100 0.99813 0.97871 1.22491 1.00552 1.03820 0.91743 1.22017 0.93693 0.97896 1.03041 1.22076 0.95519 0.98162 0.91259 0.91404 0.91388 0.95698 0.94562 0.90394 0.90700 0.90530 0.89945 0.77360 0.77131 0.91282 0.94816 0.92791 0.91652 0.90423 0.89841 0.91662 0.91070 0.90686 0.94607 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.59 60.06 0.58 0.77 16 2 N -0.55 -5.27 4.91 -242.97 -1.19 -6.47 16 3 C 0.06 0.55 5.46 -3.84 -0.02 0.53 16 4 C -0.12 -1.23 5.57 -26.65 -0.15 -1.38 16 5 C 0.17 2.14 2.52 -67.81 -0.17 1.97 16 6 N -0.75 -10.83 5.08 -58.56 -0.30 -11.13 16 7 C 0.70 13.53 8.54 -86.92 -0.74 12.78 16 8 O -0.60 -14.05 16.00 5.29 0.08 -13.97 16 9 N -0.72 -14.28 5.48 -65.22 -0.36 -14.64 16 10 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 11 C 0.03 0.68 1.38 -155.66 -0.21 0.47 16 12 C -0.50 -12.92 8.63 -34.44 -0.30 -13.22 16 13 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 14 C 0.07 1.97 5.39 -17.82 -0.10 1.88 16 15 N -0.87 -24.42 12.91 55.43 0.72 -23.70 16 16 Si 0.89 20.61 29.55 -169.99 -5.02 15.59 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 21 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 22 C -0.13 -1.54 5.67 -26.66 -0.15 -1.70 16 23 C 0.06 0.61 5.46 -3.84 -0.02 0.58 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.27 7.57 -51.93 -0.39 0.87 16 32 H 0.39 4.66 8.62 -40.82 -0.35 4.31 16 33 H 0.40 7.10 8.38 -40.82 -0.34 6.76 16 34 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 35 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 40 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -30.20 357.30 -10.32 -40.52 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.81 Total: 9.84 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.83 Total: -1.43 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -1.13 Total: -55.93 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.20 -10.32 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362341509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.196 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds