Wall clock time and date at job start Tue Mar 31 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48508 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47353 * 299.99418 * 3 2 1 6 6 H 1.48496 * 109.47326 * 59.99775 * 3 2 1 7 7 C 1.37880 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46733 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46919 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47272 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00045 * 45.79142 * 12 11 10 14 14 C 1.53166 * 109.55463 * 185.84196 * 13 12 11 15 15 C 1.53120 * 109.20873 * 300.85535 * 14 13 12 16 16 C 1.53123 * 109.21163 * 57.62805 * 15 14 13 17 17 H 1.08996 * 109.50077 * 62.25431 * 16 15 14 18 18 N 1.46496 * 109.50353 * 182.33634 * 16 15 14 19 19 C 1.47063 * 125.40696 * 239.72176 * 18 16 15 20 20 C 1.54106 * 103.85831 * 179.86669 * 19 18 16 21 21 N 1.47052 * 103.86152 * 0.37477 * 20 19 18 22 22 C 1.33940 * 109.18152 * 359.75179 * 21 20 19 23 23 O 1.21594 * 123.04023 * 180.02562 * 22 21 20 24 24 C 1.46848 * 110.99918 * 169.99731 * 12 11 10 25 25 H 0.97006 * 120.00390 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46655 * 60.00213 * 9 7 2 27 27 H 1.08995 * 109.47076 * 299.99939 * 9 7 2 28 28 H 1.09001 * 109.47015 * 60.00876 * 10 9 7 29 29 H 1.08995 * 109.47652 * 300.00030 * 10 9 7 30 30 H 1.09002 * 109.47284 * 60.00041 * 11 10 9 31 31 H 1.09007 * 109.47246 * 300.00481 * 11 10 9 32 32 H 1.09003 * 109.45905 * 305.85870 * 13 12 11 33 33 H 1.09002 * 109.46112 * 65.82067 * 13 12 11 34 34 H 1.09004 * 109.59002 * 180.90917 * 14 13 12 35 35 H 1.08997 * 109.49280 * 60.74777 * 14 13 12 36 36 H 1.09002 * 109.52427 * 297.69078 * 15 14 13 37 37 H 1.08995 * 109.52208 * 177.56397 * 15 14 13 38 38 H 1.08997 * 110.54374 * 298.59125 * 19 18 16 39 39 H 1.08999 * 110.54974 * 61.40334 * 19 18 16 40 40 H 1.08998 * 110.75420 * 241.67188 * 20 19 18 41 41 H 1.09000 * 110.45810 * 118.92327 * 20 19 18 42 42 H 0.97003 * 125.40263 * 179.75626 * 21 20 19 43 43 H 1.09006 * 109.46097 * 54.14433 * 24 12 11 44 44 H 1.08996 * 109.46972 * 294.17743 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 7 2.4349 -6.1036 0.0005 13 6 3.5027 -5.8825 0.9840 14 6 4.5543 -6.9889 0.8565 15 6 3.8879 -8.3469 1.0936 16 6 2.7483 -8.5315 0.0877 17 1 3.1529 -8.5325 -0.9244 18 7 2.0705 -9.8046 0.3448 19 6 1.9482 -10.9134 -0.6134 20 6 1.1595 -11.9863 0.1623 21 7 0.9132 -11.3644 1.4719 22 6 1.4588 -10.1413 1.4878 23 8 1.4040 -9.4034 2.4527 24 6 1.7505 -7.3810 0.2381 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 0.8539 -5.0446 -0.8903 31 1 0.8532 -5.0451 0.8896 32 1 3.9700 -4.9148 0.8012 33 1 3.0800 -5.8975 1.9886 34 1 5.3390 -6.8343 1.5970 35 1 4.9872 -6.9656 -0.1436 36 1 3.4889 -8.3849 2.1072 37 1 4.6226 -9.1411 0.9614 38 1 1.3968 -10.5954 -1.4982 39 1 2.9328 -11.2905 -0.8900 40 1 1.7514 -12.8946 0.2752 41 1 0.2175 -12.2048 -0.3407 42 1 0.4321 -11.7750 2.2074 43 1 0.9451 -7.5017 -0.4865 44 1 1.3360 -7.3891 1.2461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363200767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:02 Heat of formation + Delta-G solvation = -20.221718 kcal Electronic energy + Delta-G solvation = -22532.086806 eV Core-core repulsion = 19291.261379 eV Total energy + Delta-G solvation = -3240.825427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30746 -38.76546 -36.45304 -35.27446 -33.56554 -32.55817 -30.90034 -29.90639 -28.58986 -26.58017 -24.32017 -23.43140 -23.28987 -22.09497 -20.88332 -19.44070 -19.35581 -17.88620 -16.72891 -16.48265 -15.99479 -15.32615 -14.94040 -14.74002 -14.52217 -14.32477 -14.15829 -13.95007 -13.76689 -13.32062 -13.10448 -12.72389 -12.67629 -12.29628 -12.16384 -11.65575 -11.53444 -11.32444 -10.91230 -10.83921 -10.77010 -10.50575 -10.39914 -10.19632 -10.02470 -9.55598 -9.49479 -9.29696 -8.99639 -8.73123 -8.29906 -7.94807 -5.94994 -3.96910 2.33483 3.01150 3.34511 3.41680 3.46160 3.59883 4.05096 4.28816 4.49749 4.51025 4.62935 4.85557 4.95272 5.01932 5.10296 5.21939 5.32030 5.35048 5.40849 5.51986 5.62883 5.73371 5.79808 5.84739 5.96122 6.07172 6.11716 6.15348 6.25706 6.37783 6.41692 6.58876 6.77338 6.84214 6.86257 7.15538 7.34317 7.45324 7.47695 7.73913 7.89190 8.05749 8.45490 8.48871 9.10556 9.66842 11.16547 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035863 B = 0.003001 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.552245 B = 9326.848882 C = 9635.358925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.111 4.111 11 C 0.058 3.942 12 N -0.536 5.536 13 C 0.045 3.955 14 C -0.111 4.111 15 C -0.134 4.134 16 C 0.189 3.811 17 H 0.097 0.903 18 N -0.629 5.629 19 C 0.092 3.908 20 C 0.093 3.907 21 N -0.747 5.747 22 C 0.697 3.303 23 O -0.579 6.579 24 C 0.041 3.959 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.427 0.573 43 H 0.070 0.930 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -27.080 -1.823 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.069 4.069 12 N -0.261 5.261 13 C -0.083 4.083 14 C -0.149 4.149 15 C -0.173 4.173 16 C 0.087 3.913 17 H 0.115 0.885 18 N -0.368 5.368 19 C -0.032 4.032 20 C -0.032 4.032 21 N -0.410 5.410 22 C 0.398 3.602 23 O -0.457 6.457 24 C -0.088 4.088 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.269 0.731 43 H 0.088 0.912 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.317 -26.457 -1.851 27.049 hybrid contribution -0.336 0.591 0.954 1.171 sum 4.981 -25.865 -0.898 26.356 Atomic orbital electron populations 1.69979 1.06061 1.26396 1.51160 1.25034 0.94841 0.99255 0.95450 0.86547 0.80141 0.83864 0.77518 1.19726 1.21042 1.21083 1.21291 0.93057 0.91042 1.50127 0.92636 1.19077 0.94043 0.91359 0.97150 1.21792 0.99330 0.92997 1.00761 1.22269 0.93990 0.90355 1.00285 1.62010 1.12938 1.01682 1.49425 1.22281 0.92814 0.99551 0.93663 1.21568 0.97612 0.93484 1.02275 1.21999 0.96810 0.97691 1.00762 1.20793 0.91460 0.79345 0.99723 0.88475 1.47346 1.58693 1.16920 1.13843 1.22394 1.01004 0.86366 0.93468 1.22314 1.00459 0.96419 0.84018 1.45154 1.61510 1.17202 1.17086 1.15962 0.78610 0.82119 0.83547 1.90972 1.65182 1.53959 1.35555 1.22390 0.95864 0.89218 1.01308 0.93122 0.96573 0.96786 0.93076 0.92517 0.91128 0.95287 0.89124 0.94878 0.91277 0.91120 0.90420 0.92168 0.89907 0.90059 0.90147 0.90110 0.73137 0.91197 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.38 4.40 -26.73 -0.12 -2.50 16 11 C 0.06 1.09 5.27 -3.82 -0.02 1.07 16 12 N -0.54 -8.64 4.81 -234.58 -1.13 -9.76 16 13 C 0.04 0.68 4.85 -3.77 -0.02 0.67 16 14 C -0.11 -1.35 6.11 -26.58 -0.16 -1.51 16 15 C -0.13 -1.63 5.32 -26.61 -0.14 -1.77 16 16 C 0.19 2.25 2.94 -67.85 -0.20 2.05 16 17 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 18 N -0.63 -6.68 2.85 -171.10 -0.49 -7.17 16 19 C 0.09 0.55 7.65 -3.16 -0.02 0.52 16 20 C 0.09 0.44 8.06 -3.16 -0.03 0.41 16 21 N -0.75 -6.27 6.37 -64.70 -0.41 -6.68 16 22 C 0.70 8.88 8.06 -88.41 -0.71 8.16 16 23 O -0.58 -10.04 14.98 5.28 0.08 -9.96 16 24 C 0.04 0.61 4.73 -3.83 -0.02 0.59 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 1.08 6.21 -51.93 -0.32 0.76 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.09 1.45 5.81 -51.93 -0.30 1.15 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.16 6.73 -51.93 -0.35 0.81 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.43 2.91 8.96 -40.82 -0.37 2.55 16 43 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 44 H 0.05 0.91 6.75 -51.93 -0.35 0.55 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -34.84 342.61 -10.63 -45.46 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.57 Total: -1.59 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -1.29 Total: -50.48 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.84 -10.63 -45.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363200767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.239 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds