Wall clock time and date at job start Tue Mar 31 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00406 * 2 1 4 4 H 1.48505 * 109.46849 * 269.99847 * 3 2 1 5 5 H 1.48504 * 109.47103 * 29.99818 * 3 2 1 6 6 H 1.48500 * 109.47335 * 149.99885 * 3 2 1 7 7 C 1.37882 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46961 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46888 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46941 * 180.02562 * 11 10 9 13 13 C 1.46846 * 111.00215 * 66.04459 * 12 11 10 14 14 C 1.53038 * 109.52396 * 174.16623 * 13 12 11 15 15 C 1.53115 * 109.27976 * 59.17576 * 14 13 12 16 16 C 1.53117 * 109.16100 * 302.34557 * 15 14 13 17 17 H 1.09002 * 109.50637 * 297.67869 * 16 15 14 18 18 N 1.46497 * 109.50225 * 177.59617 * 16 15 14 19 19 C 1.47057 * 125.40952 * 120.00299 * 18 16 15 20 20 C 1.54105 * 103.99235 * 179.97438 * 19 18 16 21 21 N 1.47394 * 103.70056 * 0.10684 * 20 19 18 22 22 C 1.33947 * 109.21036 * 359.88525 * 21 20 19 23 23 O 1.21589 * 123.04015 * 180.02562 * 22 21 20 24 24 C 1.46853 * 110.99640 * 301.83421 * 12 11 10 25 25 H 0.97001 * 119.99334 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47625 * 59.99814 * 9 7 2 27 27 H 1.09003 * 109.47010 * 299.99617 * 9 7 2 28 28 H 1.08996 * 109.46873 * 59.99793 * 10 9 7 29 29 H 1.08993 * 109.46772 * 299.99711 * 10 9 7 30 30 H 1.08991 * 109.47726 * 59.99672 * 11 10 9 31 31 H 1.09003 * 109.46982 * 299.99430 * 11 10 9 32 32 H 1.08995 * 109.46217 * 54.14539 * 13 12 11 33 33 H 1.09003 * 109.45777 * 294.17867 * 13 12 11 34 34 H 1.09007 * 109.49964 * 299.23507 * 14 13 12 35 35 H 1.08997 * 109.53534 * 179.14329 * 14 13 12 36 36 H 1.09002 * 109.52108 * 182.44323 * 15 14 13 37 37 H 1.09000 * 109.57386 * 62.28557 * 15 14 13 38 38 H 1.09002 * 110.54831 * 298.59477 * 19 18 16 39 39 H 1.08997 * 110.54826 * 61.25951 * 19 18 16 40 40 H 1.08996 * 110.55034 * 118.66113 * 20 19 18 41 41 H 1.09001 * 110.54910 * 241.47819 * 20 19 18 42 42 H 0.97000 * 125.37712 * 179.97438 * 21 20 19 43 43 H 1.08993 * 109.45918 * 65.82251 * 24 12 11 44 44 H 1.08998 * 109.46222 * 305.85469 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4800 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0030 13 6 3.1978 -6.1417 1.2570 14 6 4.0741 -7.3960 1.2847 15 6 5.0266 -7.3738 0.0861 16 6 4.2080 -7.2855 -1.2048 17 1 3.5787 -8.1706 -1.2980 18 7 5.1135 -7.2059 -2.3537 19 6 5.1697 -8.1700 -3.4627 20 6 6.2769 -7.6174 -4.3811 21 7 6.7296 -6.3982 -3.6875 22 6 6.0225 -6.2440 -2.5604 23 8 6.1912 -5.3155 -1.7937 24 6 3.3279 -6.0343 -1.1604 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6239 -2.5566 0.8903 28 1 2.8711 -3.6040 0.8922 29 1 2.8724 -3.6049 -0.8877 30 1 0.8543 -5.0450 -0.8894 31 1 0.8524 -5.0447 0.8906 32 1 2.5085 -6.1614 2.1012 33 1 3.8293 -5.2558 1.3246 34 1 3.4422 -8.2826 1.2310 35 1 4.6520 -7.4165 2.2086 36 1 5.6227 -8.2863 0.0777 37 1 5.6857 -6.5088 0.1595 38 1 5.4374 -9.1607 -3.0953 39 1 4.2159 -8.2033 -3.9894 40 1 7.0936 -8.3338 -4.4695 41 1 5.8727 -7.3733 -5.3635 42 1 7.4280 -5.8014 -3.9990 43 1 3.9588 -5.1490 -1.0814 44 1 2.7332 -5.9760 -2.0720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363200768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:04 Heat of formation + Delta-G solvation = -48.686682 kcal Electronic energy + Delta-G solvation = -22985.598693 eV Core-core repulsion = 19743.538932 eV Total energy + Delta-G solvation = -3242.059761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.09403 -40.03903 -37.36647 -36.61427 -35.24029 -34.00124 -32.31005 -30.90740 -29.33094 -28.36307 -25.90079 -24.62613 -23.80973 -23.63673 -22.45144 -21.18985 -20.06290 -18.69685 -18.52064 -17.37665 -17.21779 -16.59659 -16.32585 -15.99967 -15.79419 -15.53164 -15.20958 -15.04709 -14.72914 -14.60405 -14.39972 -14.01353 -13.70185 -13.53249 -13.24077 -13.03488 -12.99016 -12.70381 -12.62013 -12.53056 -12.48187 -11.97561 -11.65580 -11.60265 -11.45214 -11.40250 -11.29683 -11.01343 -10.61230 -10.30381 -9.45340 -9.25088 -8.25849 -6.37843 1.32449 1.34308 1.46075 1.59749 2.12879 2.35213 2.88750 3.05368 3.19706 3.63556 3.74898 3.79974 4.01045 4.06859 4.18721 4.27355 4.31294 4.35501 4.44333 4.55004 4.56921 4.65820 4.73460 4.77778 4.84287 4.86612 4.95737 5.01342 5.05910 5.07953 5.15100 5.16376 5.19971 5.42168 5.46349 5.63284 5.74888 5.77546 6.02212 6.11006 6.20834 6.22749 6.60327 6.76695 7.30985 7.61391 8.85105 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.004205 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.251680 B = 6657.676093 C = 7553.395354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.550 4.550 8 H 0.044 0.956 9 C 0.032 3.968 10 C -0.125 4.125 11 C 0.065 3.935 12 N -0.519 5.519 13 C 0.043 3.957 14 C -0.100 4.100 15 C -0.129 4.129 16 C 0.195 3.805 17 H 0.127 0.873 18 N -0.631 5.631 19 C 0.086 3.914 20 C 0.093 3.907 21 N -0.743 5.743 22 C 0.681 3.319 23 O -0.639 6.639 24 C 0.041 3.959 25 H 0.266 0.734 26 H -0.005 1.005 27 H -0.001 1.001 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.008 0.992 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.431 0.569 43 H 0.018 0.982 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.508 -24.500 -7.816 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.062 0.938 9 C -0.006 4.006 10 C -0.164 4.164 11 C -0.063 4.063 12 N -0.242 5.242 13 C -0.085 4.085 14 C -0.138 4.138 15 C -0.168 4.168 16 C 0.092 3.908 17 H 0.145 0.855 18 N -0.369 5.369 19 C -0.036 4.036 20 C -0.030 4.030 21 N -0.405 5.405 22 C 0.381 3.619 23 O -0.520 6.520 24 C -0.088 4.088 25 H 0.075 0.925 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.026 0.974 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.273 0.727 43 H 0.036 0.964 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.053 -24.450 -7.367 27.825 hybrid contribution 1.022 2.642 -0.147 2.837 sum 12.075 -21.808 -7.514 26.035 Atomic orbital electron populations 1.70073 1.07502 1.27914 1.51253 1.25917 0.95851 1.03075 0.94452 0.85500 0.78577 0.78653 0.78658 1.19613 1.19676 1.19517 1.21631 0.92911 0.93003 1.51243 0.93784 1.18895 0.94076 0.92516 0.95098 1.21973 0.98665 0.96647 0.99111 1.22153 0.94490 0.86857 1.02799 1.62327 1.17296 1.42263 1.02289 1.22252 0.96359 0.97596 0.92269 1.21498 0.96924 0.97601 0.97770 1.21935 0.98358 1.02115 0.94394 1.20743 0.88604 0.98184 0.83272 0.85499 1.47359 1.37706 1.26797 1.25064 1.22775 1.00675 0.93850 0.86338 1.22717 0.97648 0.86025 0.96645 1.45280 1.41351 1.30320 1.23509 1.16416 0.80561 0.82428 0.82543 1.90954 1.73327 1.36476 1.51284 1.22392 0.94542 0.97963 0.93895 0.92489 0.98691 0.98307 0.94356 0.95016 0.90878 0.90137 0.89691 0.97410 0.88746 0.89921 0.89648 0.94301 0.87348 0.88535 0.87210 0.88141 0.72707 0.96407 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 13.29 21.45 0.28 -58.39 16 2 C 0.01 0.32 5.46 84.66 0.46 0.79 16 3 Si 0.96 47.33 29.54 68.60 2.03 49.36 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.55 -34.44 9.11 25.60 0.23 -34.20 16 8 H 0.04 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.03 1.83 4.97 29.85 0.15 1.98 16 10 C -0.12 -5.96 4.45 30.60 0.14 -5.82 16 11 C 0.07 2.45 5.36 86.30 0.46 2.91 16 12 N -0.52 -16.46 4.86 -896.36 -4.35 -20.82 16 13 C 0.04 1.29 5.05 86.33 0.44 1.72 16 14 C -0.10 -2.18 6.09 30.65 0.19 -1.99 16 15 C -0.13 -3.12 5.33 30.67 0.16 -2.96 16 16 C 0.20 4.62 2.94 45.04 0.13 4.75 16 17 H 0.13 2.23 8.10 -2.39 -0.02 2.21 16 18 N -0.63 -13.87 2.85 -813.97 -2.32 -16.18 16 19 C 0.09 0.87 7.64 86.65 0.66 1.53 16 20 C 0.09 0.77 8.08 86.58 0.70 1.47 16 21 N -0.74 -13.96 6.39 -476.59 -3.04 -17.00 16 22 C 0.68 19.66 8.06 179.57 1.45 21.11 16 23 O -0.64 -26.31 14.97 -4.00 -0.06 -26.37 16 24 C 0.04 1.34 4.14 86.32 0.36 1.70 16 25 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.04 1.87 6.68 -2.39 -0.02 1.85 16 29 H 0.03 1.60 6.51 -2.39 -0.02 1.58 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.08 2.90 8.06 -2.39 -0.02 2.88 16 32 H 0.08 2.33 8.06 -2.39 -0.02 2.32 16 33 H 0.01 0.28 6.75 -2.39 -0.02 0.26 16 34 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.28 6.72 -2.39 -0.02 1.26 16 38 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.11 0.32 8.14 -2.39 -0.02 0.31 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.43 7.15 8.96 -92.71 -0.83 6.32 16 43 H 0.02 0.75 5.22 -2.39 -0.01 0.74 16 44 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 Total: -1.00 -82.89 340.56 -1.79 -84.68 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.15 Total: 11.74 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.53 Total: -7.01 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -9.43 Total: -112.39 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.06 Total: -26.37 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -82.89 -1.79 -84.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363200768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.989 kcal (2) G-P(sol) polarization free energy of solvation -82.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds