Wall clock time and date at job start Tue Mar 31 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47700 * 2 1 4 4 N 1.46903 * 109.46657 * 119.99459 * 2 1 3 5 5 C 1.46898 * 111.00331 * 274.99651 * 4 2 1 6 6 C 1.52995 * 117.50016 * 205.00047 * 5 4 2 7 7 C 1.52997 * 60.00191 * 252.51020 * 6 5 4 8 8 C 1.50700 * 109.47323 * 239.99407 * 2 1 3 9 9 O 1.21285 * 119.99692 * 258.41408 * 8 2 1 10 10 N 1.34771 * 119.99883 * 78.40453 * 8 2 1 11 11 C 1.47076 * 120.88199 * 4.54902 * 10 8 2 12 12 C 1.53701 * 108.27717 * 128.75368 * 11 10 8 13 13 N 1.46888 * 109.25668 * 54.08101 * 12 11 10 14 14 C 1.46905 * 111.00266 * 172.60775 * 13 12 11 15 15 C 1.50707 * 109.46640 * 59.90732 * 14 13 12 16 16 H 1.08002 * 120.00394 * 4.93849 * 15 14 13 17 17 C 1.37882 * 119.99634 * 184.93221 * 15 14 13 18 18 N 1.31507 * 120.00237 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99756 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47317 * 60.00072 * 19 17 15 21 21 H 1.48499 * 109.47390 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46955 * 300.00349 * 19 17 15 23 23 C 1.46900 * 111.27315 * 296.75836 * 13 12 11 24 24 C 1.47078 * 120.87959 * 184.82542 * 10 8 2 25 25 H 1.08996 * 109.47537 * 175.25650 * 1 2 3 26 26 H 1.08997 * 109.46961 * 295.26335 * 1 2 3 27 27 H 1.09001 * 109.46492 * 55.25812 * 1 2 3 28 28 H 1.00908 * 111.00066 * 151.04660 * 4 2 1 29 29 H 1.09004 * 115.56016 * 350.69227 * 5 4 2 30 30 H 1.09006 * 117.49657 * 145.02191 * 6 5 4 31 31 H 1.09001 * 117.50395 * 0.02562 * 6 5 4 32 32 H 1.09004 * 117.49752 * 107.48874 * 7 6 5 33 33 H 1.09000 * 117.50176 * 252.48888 * 7 6 5 34 34 H 1.08997 * 109.63341 * 248.52111 * 11 10 8 35 35 H 1.09006 * 109.63128 * 9.10300 * 11 10 8 36 36 H 1.09007 * 109.64547 * 294.07897 * 12 11 10 37 37 H 1.08997 * 109.41854 * 173.95190 * 12 11 10 38 38 H 1.08998 * 109.47696 * 179.90821 * 14 13 12 39 39 H 1.08997 * 109.47140 * 299.91665 * 14 13 12 40 40 H 0.97000 * 120.00508 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.49338 * 303.14551 * 23 13 12 42 42 H 1.08997 * 109.49502 * 183.06437 * 23 13 12 43 43 H 1.09001 * 109.63028 * 350.89731 * 24 10 8 44 44 H 1.08997 * 109.63147 * 111.48466 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0824 0.2227 2.3469 6 6 3.0702 -0.1139 3.4658 7 6 1.5678 -0.2942 3.6919 8 6 2.0324 -0.7105 -1.2304 9 8 2.4334 -1.8523 -1.1499 10 7 2.0359 -0.0772 -2.4200 11 6 1.6478 1.3376 -2.5232 12 6 2.7499 2.0851 -3.2906 13 7 2.9883 1.4119 -4.5742 14 6 3.9075 2.1909 -5.4146 15 6 5.2246 2.3542 -4.7005 16 1 5.3928 1.8564 -3.7570 17 6 6.2150 3.1392 -5.2520 18 7 6.0101 3.7458 -6.4007 19 14 7.8477 3.3411 -4.3673 20 1 8.4911 2.0124 -4.2062 21 1 8.7349 4.2282 -5.1618 22 1 7.6150 3.9437 -3.0301 23 6 3.4881 0.0450 -4.3744 24 6 2.4221 -0.7843 -3.6505 25 1 -0.3634 -1.0241 -0.0850 26 1 -0.3633 0.4386 0.9294 27 1 -0.3632 0.5857 -0.8445 28 1 2.9173 -1.1205 1.0289 29 1 1.9215 1.2762 2.1177 30 1 3.5592 0.7182 3.9726 31 1 3.6738 -1.0141 3.3504 32 1 1.1827 -1.3134 3.7253 33 1 1.0684 0.4189 4.3477 34 1 0.7030 1.4200 -3.0605 35 1 1.5426 1.7623 -1.5247 36 1 3.6688 2.0859 -2.7041 37 1 2.4327 3.1120 -3.4718 38 1 4.0680 1.6691 -6.3580 39 1 3.4766 3.1726 -5.6110 40 1 6.7067 4.2983 -6.7884 41 1 4.3966 0.0742 -3.7729 42 1 3.7062 -0.4075 -5.3417 43 1 2.8291 -1.7634 -3.3978 44 1 1.5503 -0.9020 -4.2942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383417804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:18 Heat of formation + Delta-G solvation = 4.990153 kcal Electronic energy + Delta-G solvation = -22857.163560 eV Core-core repulsion = 19617.431402 eV Total energy + Delta-G solvation = -3239.732158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25185 -38.14116 -37.32888 -34.61865 -34.21717 -32.36257 -30.78531 -29.31205 -28.10889 -25.58459 -24.15253 -23.09503 -22.54445 -22.14119 -21.20827 -20.22709 -18.67938 -17.27082 -16.54005 -16.34868 -15.85601 -15.50511 -14.87398 -14.65833 -14.48170 -14.41577 -13.86885 -13.67555 -13.44177 -13.01058 -12.68510 -12.31415 -12.21939 -12.14157 -11.95757 -11.86520 -11.67917 -11.19563 -11.13120 -11.06841 -10.83932 -10.71795 -10.67186 -10.56621 -10.32302 -9.97267 -9.74830 -9.48561 -8.53923 -8.51192 -8.45684 -7.32673 -6.11470 -4.21232 2.68882 3.01931 3.22396 3.28089 3.30419 3.61485 3.85127 4.33276 4.45443 4.70771 4.74221 4.79314 4.90543 4.98068 5.18113 5.19304 5.26216 5.33750 5.42445 5.46580 5.52034 5.61794 5.68433 5.69502 5.75828 5.83614 5.93548 5.98218 6.05111 6.08031 6.35448 6.54285 6.64161 6.66474 6.82932 7.12682 7.14229 7.41862 7.54537 7.80042 7.90320 8.12512 8.18208 8.25856 8.88221 9.46317 10.93684 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.004328 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.177362 B = 6467.590388 C = 7353.838465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.070 0.930 4 N -0.640 5.640 5 C 0.016 3.984 6 C -0.195 4.195 7 C -0.168 4.168 8 C 0.511 3.489 9 O -0.540 6.540 10 N -0.603 5.603 11 C 0.106 3.894 12 C 0.050 3.950 13 N -0.540 5.540 14 C 0.188 3.812 15 C -0.554 4.554 16 H 0.055 0.945 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.278 1.278 23 C 0.050 3.950 24 C 0.115 3.885 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.355 0.645 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 -4.501 14.157 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.043 4.043 3 H 0.088 0.912 4 N -0.274 5.274 5 C -0.095 4.095 6 C -0.233 4.233 7 C -0.206 4.206 8 C 0.298 3.702 9 O -0.417 6.417 10 N -0.336 5.336 11 C -0.017 4.017 12 C -0.079 4.079 13 N -0.264 5.264 14 C 0.063 3.937 15 C -0.593 4.593 16 H 0.073 0.927 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.203 1.203 23 C -0.080 4.080 24 C -0.007 4.007 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.177 0.823 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.240 -5.276 13.928 18.659 hybrid contribution 2.647 0.932 0.565 2.862 sum -8.593 -4.344 14.494 17.401 Atomic orbital electron populations 1.21695 0.91893 1.03153 1.02273 1.21564 0.97889 0.96537 0.88327 0.91216 1.60106 1.34284 1.30537 1.02506 1.22464 1.04709 0.95229 0.87092 1.23271 0.93181 1.03640 1.03190 1.23122 0.95856 1.03025 0.98614 1.20543 0.78253 0.86874 0.84571 1.90678 1.47608 1.18145 1.85304 1.48169 1.66129 1.12133 1.07179 1.22191 0.99083 0.79912 1.00515 1.22307 0.96518 0.97509 0.91592 1.62486 1.47981 1.02060 1.13906 1.19764 0.88661 0.93236 0.92061 1.21687 1.00214 1.30207 1.07163 0.92737 1.24942 0.98553 0.95274 0.94808 1.69918 1.34110 1.31190 1.17524 0.86716 0.83792 0.78163 0.79716 1.20230 1.21067 1.20315 1.22250 0.95243 0.90633 0.99840 1.21846 0.98597 0.96113 0.84177 0.91543 0.91421 0.91796 0.82315 0.88079 0.88675 0.88483 0.88286 0.88916 0.90750 0.90323 0.93866 0.90233 0.95243 0.94556 0.92636 0.94066 0.90330 0.89479 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.30 37.16 0.35 -1.00 16 2 C 0.07 0.84 2.14 -68.86 -0.15 0.69 16 3 H 0.07 0.77 5.84 -51.93 -0.30 0.47 16 4 N -0.64 -7.77 6.34 -100.95 -0.64 -8.41 16 5 C 0.02 0.15 5.98 -67.72 -0.40 -0.25 16 6 C -0.19 -1.74 10.33 -26.74 -0.28 -2.01 16 7 C -0.17 -1.47 10.46 -26.73 -0.28 -1.75 16 8 C 0.51 7.82 6.81 -10.99 -0.07 7.74 16 9 O -0.54 -9.98 15.47 5.55 0.09 -9.89 16 10 N -0.60 -9.12 3.00 -172.18 -0.52 -9.63 16 11 C 0.11 1.44 5.81 -3.36 -0.02 1.42 16 12 C 0.05 0.88 5.18 -3.47 -0.02 0.87 16 13 N -0.54 -10.83 4.83 -235.47 -1.14 -11.96 16 14 C 0.19 4.62 5.11 -4.97 -0.03 4.59 16 15 C -0.55 -14.74 7.75 -34.44 -0.27 -15.00 16 16 H 0.05 1.46 5.88 -52.49 -0.31 1.15 16 17 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.05 0.93 5.23 -3.70 -0.02 0.91 16 24 C 0.12 1.84 6.61 -3.60 -0.02 1.82 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.61 7.99 -51.93 -0.42 0.19 16 27 H 0.06 0.58 7.36 -51.93 -0.38 0.20 16 28 H 0.35 4.76 7.74 -39.29 -0.30 4.46 16 29 H 0.10 0.92 7.60 -51.93 -0.39 0.53 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.87 5.42 -51.93 -0.28 0.59 16 36 H 0.04 0.86 6.82 -51.92 -0.35 0.51 16 37 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 38 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.04 0.87 6.89 -51.93 -0.36 0.52 16 42 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 43 H 0.09 1.42 7.04 -51.93 -0.37 1.06 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -29.93 346.25 -9.83 -39.75 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.24 Total: 3.86 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.31 Total: -0.23 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -1.56 Total: -54.78 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.93 -9.83 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383417804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.743 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds