Wall clock time and date at job start Tue Mar 31 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47845 * 111.00085 * 2 1 4 4 C 1.54905 * 104.79565 * 146.36662 * 3 2 1 5 5 C 1.55139 * 101.65209 * 322.92934 * 4 3 2 6 6 H 1.08997 * 110.85804 * 277.19897 * 5 4 3 7 7 C 1.50703 * 110.70337 * 154.03503 * 5 4 3 8 8 O 1.21282 * 120.00134 * 4.95210 * 7 5 4 9 9 N 1.34781 * 119.99801 * 184.94671 * 7 5 4 10 10 C 1.46495 * 119.99746 * 180.02562 * 9 7 5 11 11 C 1.53046 * 109.45670 * 155.00248 * 10 9 7 12 12 C 1.53193 * 109.31046 * 181.38428 * 11 10 9 13 13 N 1.46920 * 108.77553 * 305.36406 * 12 11 10 14 14 C 1.36944 * 120.63014 * 233.58628 * 13 12 11 15 15 H 1.08004 * 119.99785 * 152.74801 * 14 13 12 16 16 C 1.38808 * 119.99718 * 332.47551 * 14 13 12 17 17 N 1.31621 * 119.99766 * 159.46926 * 16 14 13 18 18 Si 1.86798 * 120.00182 * 339.46202 * 16 14 13 19 19 H 1.48506 * 109.46847 * 92.84901 * 18 16 14 20 20 H 1.48499 * 109.47580 * 212.84532 * 18 16 14 21 21 H 1.48499 * 109.47270 * 332.84844 * 18 16 14 22 22 C 1.46932 * 118.74180 * 53.85903 * 13 12 11 23 23 C 1.53034 * 109.45829 * 275.06511 * 10 9 7 24 24 C 1.47436 * 111.00267 * 120.84413 * 2 1 3 25 25 H 1.09003 * 109.47178 * 299.15983 * 1 2 3 26 26 H 1.09004 * 109.47360 * 59.15249 * 1 2 3 27 27 H 1.08993 * 109.47500 * 179.15624 * 1 2 3 28 28 H 1.09001 * 110.37420 * 265.19419 * 3 2 1 29 29 H 1.08995 * 110.37250 * 27.53403 * 3 2 1 30 30 H 1.09001 * 110.99208 * 204.83833 * 4 3 2 31 31 H 1.08999 * 110.99047 * 81.02127 * 4 3 2 32 32 H 0.97002 * 119.99834 * 359.97438 * 9 7 5 33 33 H 1.08996 * 109.46652 * 35.02992 * 10 9 7 34 34 H 1.08991 * 109.50196 * 61.43046 * 11 10 9 35 35 H 1.08996 * 109.49621 * 301.33251 * 11 10 9 36 36 H 1.09001 * 109.58867 * 185.57137 * 12 11 10 37 37 H 1.09006 * 109.70515 * 65.21869 * 12 11 10 38 38 H 0.97003 * 120.00072 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.58237 * 65.93005 * 22 13 12 40 40 H 1.09000 * 109.58460 * 186.35186 * 22 13 12 41 41 H 1.09001 * 109.50239 * 298.56871 * 23 10 9 42 42 H 1.09002 * 109.50153 * 58.63590 * 23 10 9 43 43 H 1.08996 * 109.88877 * 117.33177 * 24 2 1 44 44 H 1.09001 * 109.88746 * 356.14647 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8295 5 6 2.9159 0.2821 1.9314 6 1 2.3754 0.7723 2.7411 7 6 4.1384 -0.4232 2.4598 8 8 5.2414 -0.0918 2.0796 9 7 4.0059 -1.4221 3.3548 10 6 5.1944 -2.1073 3.8689 11 6 4.8826 -2.7082 5.2415 12 6 6.1374 -3.3940 5.7911 13 7 6.6163 -4.3679 4.8007 14 6 6.8309 -5.6736 5.1533 15 1 6.7484 -6.4539 4.4111 16 6 7.1599 -5.9936 6.4633 17 7 6.9750 -7.2186 6.9078 18 14 7.8652 -4.6857 7.5953 19 1 6.7635 -4.0424 8.3553 20 1 8.8195 -5.3142 8.5438 21 1 8.5733 -3.6609 6.7869 22 6 6.8664 -3.9129 3.4261 23 6 5.5981 -3.2225 2.9017 24 6 1.9974 -0.7057 1.1817 25 1 -0.3634 0.5007 0.8974 26 1 -0.3634 0.5269 -0.8823 27 1 -0.3634 -1.0275 -0.0151 28 1 2.2148 1.7038 -1.0182 29 1 1.2890 2.0592 0.4723 30 1 3.5496 2.2719 1.2639 31 1 4.1302 0.9281 0.2242 32 1 3.1238 -1.6868 3.6592 33 1 6.0131 -1.3938 3.9623 34 1 4.0808 -3.4402 5.1446 35 1 4.5726 -1.9164 5.9233 36 1 5.8952 -3.9079 6.7214 37 1 6.9120 -2.6497 5.9758 38 1 7.2053 -7.4423 7.8232 39 1 7.6983 -3.2086 3.4201 40 1 7.1053 -4.7693 2.7956 41 1 4.7896 -3.9496 2.8269 42 1 5.7968 -2.7968 1.9181 43 1 2.5697 -1.5784 0.8673 44 1 1.1756 -1.0120 1.8290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395331175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:59 Heat of formation + Delta-G solvation = -9.613130 kcal Electronic energy + Delta-G solvation = -22799.848469 eV Core-core repulsion = 19559.483065 eV Total energy + Delta-G solvation = -3240.365404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39188 -38.66282 -37.43633 -34.59630 -32.63570 -32.04604 -30.48419 -30.26996 -29.09953 -26.23355 -24.97554 -23.07788 -22.58645 -21.56042 -21.28366 -20.02250 -19.54029 -17.51543 -16.78039 -16.41333 -16.09786 -15.34792 -14.94949 -14.71490 -14.24315 -14.16082 -13.82583 -13.75518 -13.69292 -13.18834 -12.96731 -12.69414 -12.41597 -12.17030 -12.04313 -11.96769 -11.79483 -11.53650 -11.47557 -11.10957 -10.99347 -10.83332 -10.56606 -10.29345 -10.16088 -9.88426 -9.64425 -9.47076 -8.83127 -8.70349 -8.63688 -6.99858 -5.96127 -3.32054 2.64532 3.19896 3.29901 3.48159 3.51461 3.64870 4.15793 4.35908 4.51723 4.62039 4.93230 4.94806 4.96604 4.99205 5.03830 5.12966 5.20936 5.25365 5.32858 5.39275 5.51385 5.53133 5.65394 5.66308 5.72342 5.81445 5.98652 6.02549 6.09404 6.15752 6.32722 6.39742 6.54603 6.56708 6.64178 6.64764 6.66675 6.73807 6.91674 7.58755 7.95180 8.27897 8.31972 8.92946 9.70770 10.08507 11.19912 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.003540 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.212344 B = 7908.531393 C = 8096.641839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.040 3.960 4 C -0.108 4.108 5 C -0.134 4.134 6 H 0.099 0.901 7 C 0.522 3.478 8 O -0.537 6.537 9 N -0.723 5.723 10 C 0.150 3.850 11 C -0.140 4.140 12 C 0.129 3.871 13 N -0.607 5.607 14 C -0.259 4.259 15 H 0.086 0.914 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.881 3.119 19 H -0.289 1.289 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.150 3.850 23 C -0.140 4.140 24 C 0.052 3.948 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.396 0.604 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.025 0.975 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.438 16.885 -10.184 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.157 4.157 6 H 0.118 0.882 7 C 0.308 3.692 8 O -0.414 6.414 9 N -0.373 5.373 10 C 0.046 3.954 11 C -0.180 4.180 12 C 0.003 3.997 13 N -0.330 5.330 14 C -0.387 4.387 15 H 0.104 0.896 16 C -0.176 4.176 17 N -0.551 5.551 18 Si 0.712 3.288 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.195 1.195 22 C 0.024 3.976 23 C -0.181 4.181 24 C -0.076 4.076 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.230 0.770 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.451 16.711 -10.786 23.465 hybrid contribution -0.449 0.913 1.745 2.020 sum -12.900 17.624 -9.041 23.638 Atomic orbital electron populations 1.22570 0.87444 1.02309 1.00659 1.63571 1.08059 1.14595 1.39494 1.23125 0.95528 0.89186 1.00945 1.22593 0.97951 0.98480 0.95596 1.22611 0.95730 0.97863 0.99469 0.88240 1.20240 0.90350 0.79785 0.78874 1.90703 1.27272 1.65212 1.58195 1.46306 1.10568 1.35908 1.44525 1.20999 0.87059 0.93700 0.93596 1.22338 1.01224 0.99571 0.94843 1.21295 0.92510 0.92051 0.93833 1.44420 1.75792 1.07142 1.05666 1.18942 1.42070 0.81847 0.95886 0.89603 1.25298 0.99344 0.95701 0.97264 1.69838 1.49700 1.19150 1.16462 0.86976 0.79259 0.82043 0.80568 1.21646 1.23101 1.19492 1.20994 0.93171 0.97018 0.86429 1.22443 1.00443 0.97212 0.97961 1.22822 0.97343 0.97061 0.90357 0.95421 0.91253 0.91153 0.89764 0.93425 0.90324 0.89078 0.77022 0.89977 0.91133 0.92333 0.90533 0.95513 0.92761 0.95668 0.91547 0.91816 0.92282 0.89671 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.12 60.06 0.55 0.68 16 2 N -0.53 -4.88 5.44 -239.53 -1.30 -6.18 16 3 C 0.04 0.32 6.73 -2.30 -0.02 0.31 16 4 C -0.11 -1.04 6.13 -24.59 -0.15 -1.19 16 5 C -0.13 -1.30 3.34 -89.95 -0.30 -1.60 16 6 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 7 C 0.52 6.94 6.98 -10.98 -0.08 6.86 16 8 O -0.54 -9.30 15.43 5.56 0.09 -9.21 16 9 N -0.72 -9.15 5.02 -53.77 -0.27 -9.42 16 10 C 0.15 2.40 2.41 -67.89 -0.16 2.23 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.13 2.77 4.20 -3.71 -0.02 2.75 16 13 N -0.61 -14.35 2.76 -172.05 -0.48 -14.83 16 14 C -0.26 -7.21 10.03 -15.06 -0.15 -7.37 16 15 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 16 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 17 N -0.91 -27.74 13.97 55.49 0.78 -26.96 16 18 Si 0.88 22.27 24.34 -169.99 -4.14 18.13 16 19 H -0.29 -6.97 6.62 56.52 0.37 -6.59 16 20 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 21 H -0.27 -6.76 6.63 56.52 0.37 -6.38 16 22 C 0.15 3.04 6.54 -3.48 -0.02 3.02 16 23 C -0.14 -2.41 5.67 -26.39 -0.15 -2.56 16 24 C 0.05 0.48 6.43 -2.84 -0.02 0.46 16 25 H 0.03 0.17 8.10 -51.93 -0.42 -0.25 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.33 7.78 -51.93 -0.40 -0.07 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.07 7.49 -51.93 -0.39 0.68 16 32 H 0.40 3.95 8.59 -40.82 -0.35 3.60 16 33 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.78 4.51 -51.93 -0.23 1.55 16 37 H 0.03 0.58 7.06 -51.93 -0.37 0.21 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 0.91 7.81 -51.93 -0.41 0.50 16 44 H 0.06 0.47 7.58 -51.93 -0.39 0.07 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -32.37 337.91 -8.60 -40.97 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.61 Total: 0.74 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.76 Total: 1.67 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -1.27 Total: -57.39 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.37 -8.60 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395331175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.358 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds