Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99837 * 2 1 4 4 H 1.48508 * 109.46938 * 270.00037 * 3 2 1 5 5 H 1.48493 * 109.47063 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47234 * 150.00124 * 3 2 1 7 7 C 1.37881 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99642 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99755 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46732 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52290 * 175.00230 * 10 9 7 12 12 C 1.53035 * 109.28048 * 177.62806 * 11 10 9 13 13 N 1.46852 * 109.51954 * 300.81601 * 12 11 10 14 14 C 1.46900 * 110.99954 * 185.83867 * 13 12 11 15 15 C 1.52999 * 109.47120 * 170.00237 * 14 13 12 16 16 N 1.46498 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.47056 * 125.41098 * 90.00081 * 16 15 14 18 18 C 1.54098 * 103.86466 * 179.73696 * 17 16 15 19 19 N 1.47056 * 103.86260 * 0.02562 * 18 17 16 20 20 C 1.33945 * 109.17788 * 359.97438 * 19 18 17 21 21 O 1.21588 * 123.03908 * 179.97438 * 20 19 18 22 22 C 1.46852 * 111.19360 * 61.74364 * 13 12 11 23 23 C 1.53028 * 109.52307 * 298.25563 * 22 13 12 24 24 H 0.96997 * 119.99789 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47351 * 60.00221 * 9 7 2 26 26 H 1.08998 * 109.47605 * 299.99816 * 9 7 2 27 27 H 1.09005 * 109.52036 * 54.87747 * 10 9 7 28 28 H 1.08999 * 109.50738 * 57.67949 * 11 10 9 29 29 H 1.09005 * 109.50277 * 297.56185 * 11 10 9 30 30 H 1.08994 * 109.46617 * 180.80766 * 12 11 10 31 31 H 1.09002 * 109.46018 * 60.82795 * 12 11 10 32 32 H 1.08993 * 109.47013 * 50.00378 * 14 13 12 33 33 H 1.09006 * 109.46937 * 290.00079 * 14 13 12 34 34 H 1.09007 * 109.47239 * 59.99982 * 15 14 13 35 35 H 1.08994 * 109.47361 * 300.00023 * 15 14 13 36 36 H 1.08998 * 110.54673 * 298.33367 * 17 16 15 37 37 H 1.09000 * 110.54647 * 60.99312 * 17 16 15 38 38 H 1.09000 * 110.54809 * 118.59281 * 18 17 16 39 39 H 1.08998 * 110.54922 * 241.40392 * 18 17 16 40 40 H 0.97001 * 125.41075 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.46399 * 58.27335 * 22 13 12 42 42 H 1.09001 * 109.45845 * 178.23898 * 22 13 12 43 43 H 1.09001 * 109.50561 * 299.23533 * 23 22 13 44 44 H 1.09005 * 109.50181 * 179.12400 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5476 -2.6396 -0.1273 12 6 6.0566 -4.0816 -0.0671 13 7 5.6516 -4.6921 1.2056 14 6 6.2397 -6.0296 1.3586 15 6 6.0061 -6.5293 2.7856 16 7 6.5920 -7.8633 2.9380 17 6 7.9694 -8.1448 3.3696 18 6 8.0511 -9.6836 3.3633 19 7 6.7113 -10.1058 2.9283 20 6 5.9567 -9.0206 2.7116 21 8 4.7999 -9.0806 2.3420 22 6 4.1891 -4.7431 1.3284 23 6 3.6245 -3.3210 1.3098 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6799 -0.8911 27 1 3.5854 -3.1771 -0.8410 28 1 5.9818 -2.0659 0.6915 29 1 5.8349 -2.1918 -1.0787 30 1 7.1439 -4.0864 -0.1423 31 1 5.6328 -4.6511 -0.8942 32 1 7.3106 -5.9802 1.1617 33 1 5.7716 -6.7153 0.6522 34 1 4.9351 -6.5786 2.9826 35 1 6.4741 -5.8437 3.4919 36 1 8.6851 -7.7207 2.6653 37 1 8.1435 -7.7542 4.3722 38 1 8.8075 -10.0236 2.6559 39 1 8.2651 -10.0594 4.3638 40 1 6.4201 -11.0243 2.8167 41 1 3.7742 -5.3096 0.4947 42 1 3.9202 -5.2284 2.2667 43 1 4.0283 -2.7580 2.1513 44 1 2.5378 -3.3599 1.3853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399260732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -20.790378 kcal Electronic energy + Delta-G solvation = -22323.620576 eV Core-core repulsion = 19082.770490 eV Total energy + Delta-G solvation = -3240.850086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20717 -38.83028 -36.53172 -35.48515 -33.87435 -32.20363 -30.49617 -29.85366 -28.93912 -27.32196 -24.24662 -23.30577 -22.85141 -22.15859 -20.47112 -20.12381 -18.96154 -17.92932 -16.92696 -16.67069 -16.36889 -15.62389 -14.87544 -14.63732 -14.37461 -14.23919 -14.08404 -13.93462 -13.64379 -13.19909 -13.13274 -12.79056 -12.71303 -12.58365 -12.12468 -11.79776 -11.76385 -11.38774 -11.06733 -10.81430 -10.67431 -10.48480 -10.36932 -10.12572 -9.67857 -9.57967 -9.53192 -9.23818 -8.94730 -8.83353 -8.46568 -8.13746 -5.97291 -3.94037 2.29285 2.94331 3.35208 3.42598 3.47021 3.56706 4.00445 4.16905 4.47463 4.51438 4.60658 4.91318 4.99402 5.04731 5.26827 5.28981 5.32203 5.36644 5.39224 5.46539 5.59583 5.72657 5.81524 5.85195 5.90782 6.01865 6.11504 6.24529 6.37276 6.46210 6.52737 6.62794 6.79720 6.91075 7.00757 7.09807 7.25096 7.26781 7.32004 7.40118 7.56882 7.88147 8.37670 8.62374 9.08548 9.65924 11.16223 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.003027 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.070265 B = 9246.901502 C = 9636.904818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.074 4.074 11 C -0.114 4.114 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.040 3.960 15 C 0.153 3.847 16 N -0.631 5.631 17 C 0.091 3.909 18 C 0.093 3.907 19 N -0.746 5.746 20 C 0.696 3.304 21 O -0.582 6.582 22 C 0.052 3.948 23 C -0.100 4.100 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.009 0.991 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.428 0.572 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.237 -17.883 7.296 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.066 4.066 13 N -0.260 5.260 14 C -0.090 4.090 15 C 0.030 3.970 16 N -0.370 5.370 17 C -0.033 4.033 18 C -0.032 4.032 19 N -0.408 5.408 20 C 0.396 3.604 21 O -0.460 6.460 22 C -0.076 4.076 23 C -0.138 4.138 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.270 0.730 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.608 -17.315 7.474 27.935 hybrid contribution 0.136 -0.028 -0.750 0.763 sum 20.743 -17.343 6.724 27.862 Atomic orbital electron populations 1.69923 1.06286 1.26713 1.51634 1.25043 0.94694 0.99106 0.94803 0.86797 0.80420 0.83799 0.78367 1.20485 1.21556 1.18976 1.21172 0.89565 0.94304 1.50084 0.90943 1.19604 0.97052 0.91812 0.96088 1.21059 0.92429 0.98787 0.96971 1.21722 0.97627 0.94403 1.01398 1.22069 0.99190 0.96220 0.89153 1.61931 1.10439 1.18928 1.34655 1.22412 0.99728 0.90196 0.96658 1.21265 0.99705 0.79049 0.96932 1.47173 1.12870 1.05615 1.71359 1.22390 0.84852 0.94513 1.01541 1.22326 0.85868 0.93854 1.01191 1.45122 1.13397 1.08217 1.74092 1.15964 0.84589 0.81435 0.78395 1.90997 1.15425 1.86033 1.53500 1.22288 0.86000 0.98932 1.00352 1.21551 1.01157 0.92793 0.98286 0.92886 0.96556 0.97267 0.92457 0.91579 0.92134 0.91671 0.95252 0.91136 0.94660 0.89398 0.89210 0.90025 0.89871 0.90081 0.90036 0.73044 0.95085 0.91189 0.91894 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.37 13.96 55.43 0.77 -27.59 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.51 -14.67 9.00 -34.44 -0.31 -14.98 16 8 H 0.07 2.22 7.33 -52.49 -0.38 1.84 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 10 C -0.07 -1.48 2.20 -90.50 -0.20 -1.68 16 11 C -0.11 -1.87 5.38 -26.65 -0.14 -2.01 16 12 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 13 N -0.53 -7.62 4.66 -234.67 -1.09 -8.72 16 14 C 0.04 0.48 5.28 -3.82 -0.02 0.46 16 15 C 0.15 1.70 5.93 -4.04 -0.02 1.67 16 16 N -0.63 -6.38 2.96 -178.82 -0.53 -6.91 16 17 C 0.09 0.50 7.68 -3.17 -0.02 0.47 16 18 C 0.09 0.39 8.06 -3.17 -0.03 0.36 16 19 N -0.75 -5.92 6.37 -64.70 -0.41 -6.33 16 20 C 0.70 8.68 8.60 -88.40 -0.76 7.92 16 21 O -0.58 -10.19 17.53 5.29 0.09 -10.09 16 22 C 0.05 0.83 5.29 -3.84 -0.02 0.81 16 23 C -0.10 -1.90 5.15 -26.66 -0.14 -2.04 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.74 7.99 -51.93 -0.41 0.33 16 33 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.09 1.17 6.20 -51.93 -0.32 0.85 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.43 2.71 8.96 -40.82 -0.37 2.34 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.06 6.21 -51.93 -0.32 0.74 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.66 7.06 -51.93 -0.37 1.29 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -35.19 343.25 -10.14 -45.33 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.60 Total: -1.63 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.88 Total: -6.65 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -1.26 Total: -49.55 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.19 -10.14 -45.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399260732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.541 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds