Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48498 * 109.47532 * 270.00041 * 3 2 1 5 5 H 1.48500 * 109.46917 * 30.00413 * 3 2 1 6 6 H 1.48501 * 109.47343 * 150.00020 * 3 2 1 7 7 C 1.37880 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99982 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00042 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00447 * 180.02562 * 11 10 9 14 14 C 1.47024 * 125.64057 * 0.03021 * 13 11 10 15 15 C 1.54326 * 107.39673 * 178.98013 * 14 13 11 16 16 C 1.55162 * 102.94214 * 337.72496 * 15 14 13 17 17 H 1.08997 * 111.00402 * 277.39163 * 16 15 14 18 18 C 1.53001 * 110.99982 * 153.57523 * 16 15 14 19 19 N 1.46899 * 109.46896 * 175.33796 * 18 16 15 20 20 C 1.48541 * 111.00067 * 176.90564 * 19 18 16 21 21 C 1.54938 * 103.22612 * 159.72141 * 20 19 18 22 22 C 1.54595 * 102.92292 * 322.59017 * 21 20 19 23 23 C 1.47899 * 111.00454 * 294.30498 * 19 18 16 24 24 C 1.47733 * 125.82306 * 179.97438 * 13 11 10 25 25 H 0.96999 * 119.99632 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47023 * 60.00005 * 9 7 2 27 27 H 1.08999 * 109.47020 * 300.00056 * 9 7 2 28 28 H 0.96999 * 120.00023 * 0.02562 * 10 9 7 29 29 H 1.09004 * 109.88519 * 59.48573 * 14 13 11 30 30 H 1.08991 * 109.88447 * 298.47100 * 14 13 11 31 31 H 1.08998 * 110.71996 * 96.09353 * 15 14 13 32 32 H 1.09005 * 110.71980 * 219.18703 * 15 14 13 33 33 H 1.08997 * 109.47672 * 295.33967 * 18 16 15 34 34 H 1.09003 * 109.46983 * 55.34419 * 18 16 15 35 35 H 1.08999 * 110.66660 * 278.16165 * 20 19 18 36 36 H 1.09002 * 110.66288 * 41.29107 * 20 19 18 37 37 H 1.08996 * 110.72341 * 204.22798 * 21 20 19 38 38 H 1.08998 * 110.87403 * 81.01661 * 21 20 19 39 39 H 1.08998 * 110.30659 * 263.03935 * 22 21 20 40 40 H 1.09000 * 110.30743 * 140.87370 * 22 21 20 41 41 H 1.09004 * 109.91387 * 333.50986 * 23 19 18 42 42 H 1.09002 * 109.92024 * 94.79852 * 23 19 18 43 43 H 1.08998 * 110.28649 * 85.26300 * 24 13 11 44 44 H 1.08999 * 110.47263 * 323.02994 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5584 -5.1055 -0.0006 13 7 2.6295 -5.9079 -0.0021 14 6 4.0944 -5.7827 -0.0025 15 6 4.6795 -7.2105 0.0231 16 6 3.5157 -8.0526 0.6096 17 1 3.5020 -7.9954 1.6980 18 6 3.6003 -9.5065 0.1406 19 7 2.5523 -10.2958 0.8014 20 6 2.5559 -11.6991 0.3144 21 6 1.8110 -12.4656 1.4360 22 6 2.3022 -11.7609 2.7214 23 6 2.7878 -10.3745 2.2594 24 6 2.2808 -7.3434 -0.0013 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 3.1567 -3.4355 -0.0021 29 1 4.4198 -5.2329 0.8807 30 1 4.4219 -5.2640 -0.9034 31 1 4.9271 -7.5439 -0.9847 32 1 5.5562 -7.2566 0.6693 33 1 3.4602 -9.5487 -0.9395 34 1 4.5781 -9.9144 0.3965 35 1 2.0176 -11.7799 -0.6299 36 1 3.5765 -12.0671 0.2093 37 1 2.0966 -13.5175 1.4396 38 1 0.7315 -12.3608 1.3272 39 1 3.1240 -12.3199 3.1688 40 1 1.4828 -11.6571 3.4326 41 1 3.8517 -10.2644 2.4702 42 1 2.2230 -9.5942 2.7695 43 1 2.1085 -7.6910 -1.0199 44 1 1.3987 -7.5212 0.6138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408367528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = -30.291280 kcal Electronic energy + Delta-G solvation = -22081.749210 eV Core-core repulsion = 18840.487134 eV Total energy + Delta-G solvation = -3241.262076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90339 -38.97787 -37.14395 -34.06829 -33.35113 -32.18345 -30.68311 -29.23008 -28.75600 -27.16529 -25.12186 -23.17679 -22.06610 -21.46763 -21.33384 -19.81470 -19.22159 -17.85827 -16.77149 -16.20992 -15.94551 -15.69847 -15.14646 -14.61119 -14.50316 -14.25525 -13.70790 -13.57040 -13.26645 -13.00142 -12.78620 -12.63389 -12.58905 -12.08972 -11.87931 -11.71467 -11.64895 -11.53145 -11.38204 -11.01189 -10.94631 -10.88657 -10.86532 -10.83092 -10.68647 -10.25344 -9.32182 -9.30732 -8.67844 -8.65915 -8.26761 -7.63841 -6.10871 -4.17163 3.26903 3.27613 3.34004 3.37387 3.66039 4.00931 4.33322 4.36055 4.37216 4.50221 4.58148 4.69851 4.78351 4.96737 5.03515 5.13365 5.16956 5.24125 5.25005 5.30710 5.38262 5.48668 5.53204 5.54370 5.57648 5.69376 5.70103 5.75151 5.80935 5.91452 6.01601 6.15864 6.22316 6.60473 6.65502 6.78108 7.28712 7.58682 7.63628 7.66343 7.96864 8.09720 8.82172 8.99358 9.40296 9.55264 10.99490 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038644 B = 0.002843 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.395010 B = 9846.599865 C =10184.019186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.711 3.289 12 O -0.597 6.597 13 N -0.648 5.648 14 C 0.102 3.898 15 C -0.123 4.123 16 C -0.099 4.099 17 H 0.084 0.916 18 C 0.060 3.940 19 N -0.516 5.516 20 C 0.034 3.966 21 C -0.124 4.124 22 C -0.132 4.132 23 C 0.034 3.966 24 C 0.145 3.855 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.385 0.615 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 -23.752 2.309 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.413 3.587 12 O -0.476 6.476 13 N -0.389 5.389 14 C -0.021 4.021 15 C -0.162 4.162 16 C -0.118 4.118 17 H 0.102 0.898 18 C -0.068 4.068 19 N -0.240 5.240 20 C -0.094 4.094 21 C -0.162 4.162 22 C -0.171 4.171 23 C -0.094 4.094 24 C 0.021 3.979 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.952 -23.380 2.191 25.505 hybrid contribution 1.777 0.717 0.160 1.923 sum 11.729 -22.664 2.350 25.627 Atomic orbital electron populations 1.69987 1.06075 1.27203 1.49041 1.24949 0.94914 0.99366 0.94838 0.86414 0.79587 0.82704 0.78171 1.20493 1.21020 1.19807 1.21223 0.93219 0.90455 1.52967 0.92029 1.18978 0.87813 0.81054 0.97597 1.45720 1.10756 1.04254 1.77266 1.15688 0.84257 0.80400 0.78392 1.90874 1.13783 1.83844 1.59129 1.47740 1.05207 1.05747 1.80218 1.21863 0.81569 0.97264 1.01453 1.22628 0.97617 0.94156 1.01782 1.22383 0.95423 0.93203 1.00812 0.89754 1.22218 0.92468 0.92561 0.99565 1.64763 1.44909 1.10750 1.03563 1.23227 0.99026 0.88108 0.98999 1.22469 1.01058 0.98574 0.94089 1.22409 1.01029 0.95538 0.98075 1.22895 0.99462 0.97823 0.89184 1.21900 0.97200 0.78556 1.00230 0.92492 0.95762 0.95754 0.78224 0.91929 0.91843 0.90583 0.90321 0.90216 0.94291 0.89916 0.93911 0.91246 0.90573 0.91716 0.90927 0.93781 0.90096 0.92318 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.13 9.28 -34.44 -0.32 -15.45 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.45 5.43 -5.19 -0.03 7.42 16 10 N -0.73 -16.76 5.51 -66.41 -0.37 -17.13 16 11 C 0.71 16.12 8.49 -86.92 -0.74 15.38 16 12 O -0.60 -16.14 16.62 5.29 0.09 -16.05 16 13 N -0.65 -11.08 3.34 -175.96 -0.59 -11.67 16 14 C 0.10 1.29 6.14 -3.06 -0.02 1.27 16 15 C -0.12 -1.12 6.42 -24.89 -0.16 -1.28 16 16 C -0.10 -1.01 3.01 -88.45 -0.27 -1.28 16 17 H 0.08 0.90 7.17 -51.93 -0.37 0.53 16 18 C 0.06 0.52 4.19 -3.82 -0.02 0.51 16 19 N -0.52 -4.84 5.24 -230.45 -1.21 -6.05 16 20 C 0.03 0.26 6.56 -1.89 -0.01 0.25 16 21 C -0.12 -0.86 7.06 -24.87 -0.18 -1.03 16 22 C -0.13 -0.94 6.93 -25.38 -0.18 -1.12 16 23 C 0.03 0.29 5.55 -2.76 -0.02 0.28 16 24 C 0.14 2.10 6.34 -2.34 -0.01 2.08 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.39 7.72 7.31 -40.82 -0.30 7.43 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.68 7.97 -51.93 -0.41 0.26 16 34 H 0.04 0.30 7.94 -51.93 -0.41 -0.12 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.30 8.02 -51.93 -0.42 -0.12 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.35 7.64 -51.93 -0.40 -0.05 16 42 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 43 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 44 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -33.88 351.13 -10.84 -44.72 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.74 Total: 1.91 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -2.04 Total: 8.71 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -1.42 Total: -60.81 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.09 Total: -16.05 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.88 -10.84 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408367528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.432 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds