Wall clock time and date at job start Tue Mar 31 2020 05:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34780 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99882 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00305 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64752 * 359.69848 * 13 11 10 15 15 C 1.54312 * 107.27643 * 180.96717 * 14 13 11 16 16 C 1.55151 * 102.86687 * 22.52058 * 15 14 13 17 17 H 1.09004 * 111.00572 * 82.37899 * 16 15 14 18 18 C 1.52998 * 111.04203 * 206.21833 * 16 15 14 19 19 N 1.46897 * 109.47458 * 178.66910 * 18 16 15 20 20 C 1.48535 * 111.00171 * 52.60199 * 19 18 16 21 21 C 1.54936 * 103.22963 * 159.72065 * 20 19 18 22 22 C 1.54593 * 102.91992 * 322.59136 * 21 20 19 23 23 C 1.47897 * 111.00190 * 170.00215 * 19 18 16 24 24 C 1.47426 * 125.65068 * 180.02562 * 13 11 10 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 0.97003 * 120.00560 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.88168 * 300.50745 * 14 13 11 30 30 H 1.09000 * 109.88676 * 61.67413 * 14 13 11 31 31 H 1.09004 * 110.92350 * 264.11036 * 15 14 13 32 32 H 1.09001 * 110.74988 * 140.85333 * 15 14 13 33 33 H 1.09002 * 109.47185 * 298.67311 * 18 16 15 34 34 H 1.08997 * 109.46928 * 58.66614 * 18 16 15 35 35 H 1.08997 * 110.66675 * 278.16192 * 20 19 18 36 36 H 1.09002 * 110.66165 * 41.28624 * 20 19 18 37 37 H 1.08989 * 110.72399 * 204.22677 * 21 20 19 38 38 H 1.09002 * 110.71716 * 80.94312 * 21 20 19 39 39 H 1.09007 * 110.30830 * 263.03604 * 22 21 20 40 40 H 1.09003 * 110.39297 * 140.92019 * 22 21 20 41 41 H 1.09001 * 109.91773 * 333.50407 * 23 19 18 42 42 H 1.09002 * 109.92278 * 94.60836 * 23 19 18 43 43 H 1.08999 * 110.36445 * 274.67779 * 24 13 11 44 44 H 1.08995 * 110.36385 * 36.99739 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 1.7536 -4.8834 -0.0154 12 8 0.5581 -5.1055 -0.0156 13 7 2.6293 -5.9078 -0.0204 14 6 4.0942 -5.7828 -0.0271 15 6 4.6760 -7.2117 -0.0560 16 6 3.5086 -8.0482 -0.6431 17 1 3.4914 -7.9852 -1.7312 18 6 3.5906 -9.5049 -0.1825 19 7 2.4542 -10.2568 -0.7311 20 6 2.3596 -10.0800 -2.2028 21 6 1.5080 -11.2940 -2.6518 22 6 2.0042 -12.4264 -1.7237 23 6 2.6230 -11.7093 -0.5095 24 6 2.2770 -7.3393 -0.0269 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 3.1566 -3.4355 -0.0097 29 1 4.4151 -5.2320 -0.9113 30 1 4.4265 -5.2675 0.8740 31 1 4.9257 -7.5507 0.9494 32 1 5.5498 -7.2598 -0.7058 33 1 4.5227 -9.9459 -0.5360 34 1 3.5604 -9.5438 0.9064 35 1 1.8550 -9.1450 -2.4463 36 1 3.3491 -10.1144 -2.6587 37 1 1.7038 -11.5374 -3.6960 38 1 0.4472 -11.1012 -2.4918 39 1 2.7574 -13.0290 -2.2314 40 1 1.1694 -13.0523 -1.4085 41 1 3.6828 -11.9528 -0.4349 42 1 2.1083 -12.0079 0.4038 43 1 2.1058 -7.6924 0.9900 44 1 1.3937 -7.5098 -0.6423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408367529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:30 Heat of formation + Delta-G solvation = -29.554267 kcal Electronic energy + Delta-G solvation = -22172.660428 eV Core-core repulsion = 18931.430311 eV Total energy + Delta-G solvation = -3241.230117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97562 -38.97713 -37.13617 -34.07598 -33.35241 -32.18724 -30.69191 -29.32644 -28.63637 -27.17191 -25.16286 -23.19237 -22.06752 -21.70887 -21.03399 -19.85305 -19.23112 -17.87724 -16.73490 -16.17535 -15.95792 -15.61156 -15.16025 -14.77782 -14.53684 -14.27544 -13.77718 -13.41223 -13.27705 -13.02618 -12.86955 -12.62167 -12.52391 -12.05435 -11.87897 -11.72391 -11.60698 -11.47149 -11.41980 -11.04209 -10.97502 -10.88683 -10.85091 -10.81461 -10.69370 -10.25670 -9.32688 -9.31387 -8.68280 -8.64642 -8.27586 -7.64487 -6.11243 -4.17536 3.26631 3.27312 3.33778 3.37174 3.67370 3.99889 4.32032 4.35744 4.41060 4.50275 4.57925 4.69644 4.75028 4.98936 5.04471 5.12146 5.16346 5.24155 5.24696 5.29420 5.39463 5.50832 5.52906 5.55643 5.59542 5.68609 5.71986 5.74512 5.83492 5.92188 6.01193 6.14272 6.21377 6.59774 6.66646 6.78859 7.28095 7.58123 7.63106 7.65692 7.96138 8.09081 8.81657 8.98573 9.39699 9.54614 10.99108 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037757 B = 0.002918 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.408714 B = 9594.579838 C =10003.448796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.711 3.289 12 O -0.597 6.597 13 N -0.648 5.648 14 C 0.103 3.897 15 C -0.123 4.123 16 C -0.104 4.104 17 H 0.084 0.916 18 C 0.061 3.939 19 N -0.515 5.515 20 C 0.032 3.968 21 C -0.125 4.125 22 C -0.131 4.131 23 C 0.035 3.965 24 C 0.145 3.855 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.385 0.615 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.263 -23.252 -2.848 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.412 3.588 12 O -0.476 6.476 13 N -0.389 5.389 14 C -0.021 4.021 15 C -0.161 4.161 16 C -0.124 4.124 17 H 0.103 0.897 18 C -0.068 4.068 19 N -0.240 5.240 20 C -0.095 4.095 21 C -0.163 4.163 22 C -0.169 4.169 23 C -0.093 4.093 24 C 0.022 3.978 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.649 -22.954 -2.558 25.030 hybrid contribution 1.745 0.761 -0.361 1.938 sum 11.394 -22.192 -2.919 25.117 Atomic orbital electron populations 1.69986 1.06077 1.27206 1.49027 1.24948 0.94914 0.99368 0.94833 0.86414 0.79597 0.82704 0.78165 1.20503 1.21015 1.19798 1.21225 0.93217 0.90452 1.52983 0.92030 1.18977 0.87812 0.81057 0.97594 1.45721 1.10759 1.04257 1.77245 1.15697 0.84265 0.80415 0.78403 1.90876 1.13771 1.83848 1.59116 1.47675 1.05229 1.05748 1.80230 1.21868 0.81523 0.97256 1.01479 1.22616 0.97538 0.94127 1.01821 1.22470 0.95749 0.93403 1.00770 0.89735 1.22241 0.91430 0.92550 1.00569 1.64810 1.40402 1.06615 1.12130 1.23275 0.98759 0.99582 0.87913 1.22488 1.00715 0.94350 0.98769 1.22394 1.00607 0.97982 0.95949 1.22872 0.99213 0.88043 0.99126 1.21827 0.96967 0.78640 1.00414 0.92489 0.95746 0.95772 0.78220 0.91875 0.91792 0.90489 0.90312 0.94318 0.90151 0.89576 0.93821 0.91162 0.90516 0.91736 0.91015 0.93945 0.90305 0.92119 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.43 5.43 -5.20 -0.03 7.40 16 10 N -0.73 -16.68 5.51 -66.42 -0.37 -17.05 16 11 C 0.71 16.02 8.49 -86.92 -0.74 15.28 16 12 O -0.60 -16.04 16.60 5.28 0.09 -15.95 16 13 N -0.65 -10.98 3.33 -176.26 -0.59 -11.57 16 14 C 0.10 1.28 6.14 -3.07 -0.02 1.26 16 15 C -0.12 -1.10 6.42 -24.91 -0.16 -1.26 16 16 C -0.10 -1.06 2.64 -88.49 -0.23 -1.29 16 17 H 0.08 0.88 6.76 -51.93 -0.35 0.52 16 18 C 0.06 0.53 4.48 -3.83 -0.02 0.51 16 19 N -0.52 -4.91 5.22 -230.46 -1.20 -6.11 16 20 C 0.03 0.29 5.12 -1.90 -0.01 0.28 16 21 C -0.13 -0.97 7.06 -24.87 -0.18 -1.14 16 22 C -0.13 -0.91 6.93 -25.38 -0.18 -1.08 16 23 C 0.04 0.28 6.70 -2.76 -0.02 0.26 16 24 C 0.15 2.09 6.21 -2.54 -0.02 2.07 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.39 7.69 7.31 -40.82 -0.30 7.39 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.30 7.81 -51.93 -0.41 -0.11 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.09 0.88 7.62 -51.93 -0.40 0.48 16 36 H 0.04 0.36 8.02 -51.93 -0.42 -0.06 16 37 H 0.07 0.46 8.14 -51.94 -0.42 0.04 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.30 7.57 -51.93 -0.39 -0.09 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.88 8.00 -51.93 -0.42 0.46 16 44 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -33.72 349.72 -10.78 -44.50 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.69 Total: 2.11 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.01 Total: 8.54 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -1.42 Total: -60.64 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.09 Total: -15.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.72 -10.78 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408367529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.945 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds