Wall clock time and date at job start Tue Mar 31 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99791 * 2 1 4 4 H 1.48497 * 109.46813 * 269.99892 * 3 2 1 5 5 H 1.48498 * 109.46890 * 29.99966 * 3 2 1 6 6 H 1.48505 * 109.46851 * 149.99698 * 3 2 1 7 7 C 1.37873 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00332 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.34789 * 119.99925 * 179.97438 * 10 9 7 12 12 O 1.21578 * 119.99616 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99755 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64932 * 355.11826 * 13 11 10 15 15 C 1.54910 * 104.83062 * 155.83279 * 14 13 11 16 16 C 1.55154 * 101.58192 * 37.00443 * 15 14 13 17 17 C 1.47020 * 125.64376 * 175.06702 * 13 11 10 18 18 H 1.08997 * 109.88577 * 300.51461 * 17 13 11 19 19 C 1.53001 * 109.88031 * 61.68591 * 17 13 11 20 20 N 1.46904 * 109.46793 * 184.11304 * 19 17 13 21 21 C 1.48528 * 111.00233 * 58.37554 * 20 19 17 22 22 C 1.54936 * 103.22902 * 159.71878 * 21 20 19 23 23 C 1.54593 * 102.91987 * 322.58355 * 22 21 20 24 24 C 1.47901 * 110.99544 * 175.77167 * 20 19 17 25 25 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47017 * 59.99874 * 9 7 2 27 27 H 1.09005 * 109.46927 * 300.00235 * 9 7 2 28 28 H 0.96997 * 120.00457 * 359.97438 * 10 9 7 29 29 H 1.08999 * 110.37066 * 36.98914 * 14 13 11 30 30 H 1.09001 * 110.45610 * 274.71657 * 14 13 11 31 31 H 1.08995 * 111.00125 * 155.08178 * 15 14 13 32 32 H 1.09000 * 111.00215 * 278.93228 * 15 14 13 33 33 H 1.09010 * 110.71835 * 82.86028 * 16 15 14 34 34 H 1.08998 * 110.71992 * 206.13333 * 16 15 14 35 35 H 1.09006 * 109.47012 * 304.11024 * 19 17 13 36 36 H 1.08993 * 109.47279 * 64.10877 * 19 17 13 37 37 H 1.09002 * 110.66848 * 278.15888 * 21 20 19 38 38 H 1.09008 * 110.66678 * 41.28275 * 21 20 19 39 39 H 1.09000 * 110.72459 * 204.22971 * 22 21 20 40 40 H 1.09001 * 110.72529 * 80.94548 * 22 21 20 41 41 H 1.08997 * 110.31417 * 263.03840 * 23 22 21 42 42 H 1.09008 * 110.30664 * 140.87366 * 23 22 21 43 43 H 1.09000 * 109.92067 * 333.50623 * 24 20 19 44 44 H 1.08998 * 109.92007 * 94.80797 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5585 -5.1055 0.0011 13 7 2.6297 -5.9077 0.0005 14 6 4.0953 -5.7851 -0.1025 15 6 4.6481 -7.0775 0.5484 16 6 3.6036 -8.1289 0.0892 17 6 2.2819 -7.3325 0.1037 18 1 1.7481 -7.5172 1.0359 19 6 1.4135 -7.7436 -1.0870 20 7 0.9899 -9.1409 -0.9247 21 6 0.2359 -9.3249 0.3416 22 6 -0.5518 -10.6366 0.0978 23 6 -0.9436 -10.5324 -1.3940 24 6 0.0654 -9.5434 -2.0067 25 1 -0.4851 0.8401 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4354 0.0002 29 1 4.4419 -4.9073 0.4429 30 1 4.4001 -5.7263 -1.1474 31 1 5.6389 -7.3165 0.1622 32 1 4.6643 -6.9916 1.6349 33 1 3.8295 -8.4830 -0.9168 34 1 3.5600 -8.9614 0.7915 35 1 0.5346 -7.1007 -1.1348 36 1 1.9880 -7.6426 -2.0077 37 1 0.9192 -9.4372 1.1834 38 1 -0.4468 -8.4914 0.5075 39 1 -1.4402 -10.6759 0.7281 40 1 0.0833 -11.5056 0.2700 41 1 -1.9585 -10.1472 -1.4927 42 1 -0.8593 -11.5063 -1.8763 43 1 -0.4589 -8.6688 -2.3917 44 1 0.6213 -10.0292 -2.8086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408368137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:23 Heat of formation + Delta-G solvation = -27.639433 kcal Electronic energy + Delta-G solvation = -22719.087303 eV Core-core repulsion = 19477.940220 eV Total energy + Delta-G solvation = -3241.147083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07970 -38.65964 -37.08079 -34.18014 -32.83717 -32.15858 -31.08193 -29.25683 -28.56592 -26.98960 -24.89477 -23.19379 -22.00075 -21.47354 -20.88416 -20.28725 -19.01401 -17.78956 -16.64008 -16.06754 -15.97751 -15.37855 -14.93255 -14.65602 -14.29332 -14.23538 -13.94268 -13.46551 -13.17134 -12.89528 -12.79963 -12.47114 -12.26506 -12.02009 -11.91443 -11.67873 -11.48939 -11.30409 -11.18717 -11.14298 -10.93880 -10.87590 -10.70453 -10.65195 -10.56727 -10.28121 -9.37626 -9.35453 -8.71958 -8.42459 -8.31559 -7.69951 -6.14387 -4.20883 3.13849 3.25329 3.31561 3.34370 3.90440 4.08016 4.32944 4.57291 4.58365 4.59790 4.65880 4.88633 4.93271 5.02181 5.21701 5.22131 5.26676 5.38224 5.44422 5.47983 5.61408 5.66675 5.69844 5.75632 5.76640 5.79410 5.88937 5.92344 5.94454 6.08020 6.11642 6.11949 6.31353 6.59090 6.86357 7.02329 7.24775 7.53385 7.58299 7.61104 7.91238 8.04933 8.77702 8.93054 9.34895 9.49860 10.95887 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003681 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.729154 B = 7604.018044 C = 8456.078934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.711 3.289 12 O -0.597 6.597 13 N -0.642 5.642 14 C 0.102 3.898 15 C -0.134 4.134 16 C -0.113 4.113 17 C 0.162 3.838 18 H 0.069 0.931 19 C 0.033 3.967 20 N -0.513 5.513 21 C 0.030 3.970 22 C -0.123 4.123 23 C -0.130 4.130 24 C 0.035 3.965 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.617 -20.299 -0.785 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.413 3.587 12 O -0.476 6.476 13 N -0.383 5.383 14 C -0.022 4.022 15 C -0.173 4.173 16 C -0.151 4.151 17 C 0.057 3.943 18 H 0.087 0.913 19 C -0.096 4.096 20 N -0.238 5.238 21 C -0.098 4.098 22 C -0.161 4.161 23 C -0.169 4.169 24 C -0.093 4.093 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.219 0.781 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.948 -20.488 -0.797 21.349 hybrid contribution 0.150 1.674 -0.087 1.683 sum 6.097 -18.814 -0.884 19.798 Atomic orbital electron populations 1.69980 1.06094 1.27244 1.48993 1.24942 0.94909 0.99384 0.94771 0.86414 0.79614 0.82662 0.78199 1.20474 1.21009 1.19759 1.21218 0.93239 0.90432 1.53065 0.92004 1.18974 0.87783 0.81068 0.97537 1.45757 1.10846 1.04230 1.77091 1.15701 0.84260 0.80431 0.78292 1.90845 1.13831 1.83818 1.59143 1.47699 1.05879 1.05102 1.79571 1.22190 0.81013 0.98658 1.00330 1.22792 0.98784 0.94686 1.01001 1.22568 0.92911 0.97086 1.02540 1.21226 0.95679 0.79740 0.97622 0.91316 1.22720 1.00159 0.88134 0.98550 1.64778 1.35862 1.21063 1.02103 1.23272 0.96156 0.96924 0.93403 1.22470 0.99705 0.98003 0.95913 1.22388 0.98831 0.99541 0.96102 1.22840 0.93433 0.98059 0.94968 0.92477 0.95821 0.95780 0.78135 0.90957 0.91885 0.90146 0.90797 0.90351 0.90328 0.92141 0.90967 0.90161 0.93099 0.91245 0.90931 0.91601 0.91223 0.93619 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.27 7.33 5.43 -5.20 -0.03 7.30 16 10 N -0.73 -16.29 5.51 -66.42 -0.37 -16.66 16 11 C 0.71 15.46 8.31 -86.90 -0.72 14.74 16 12 O -0.60 -15.25 15.15 5.30 0.08 -15.17 16 13 N -0.64 -10.58 3.06 -168.69 -0.52 -11.10 16 14 C 0.10 1.26 6.68 -2.53 -0.02 1.24 16 15 C -0.13 -1.29 7.08 -24.58 -0.17 -1.46 16 16 C -0.11 -1.17 6.27 -24.90 -0.16 -1.33 16 17 C 0.16 2.29 2.75 -66.95 -0.18 2.11 16 18 H 0.07 1.05 6.67 -51.93 -0.35 0.70 16 19 C 0.03 0.49 4.22 -3.82 -0.02 0.47 16 20 N -0.51 -6.33 5.13 -230.45 -1.18 -7.51 16 21 C 0.03 0.36 5.35 -1.90 -0.01 0.35 16 22 C -0.12 -1.16 7.06 -24.87 -0.18 -1.33 16 23 C -0.13 -1.23 6.93 -25.37 -0.18 -1.41 16 24 C 0.04 0.40 6.70 -2.75 -0.02 0.38 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.55 6.72 -40.82 -0.27 7.28 16 29 H 0.07 0.88 7.12 -51.93 -0.37 0.51 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.80 7.78 -51.92 -0.40 0.39 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.12 6.41 -51.93 -0.33 0.79 16 36 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 37 H 0.08 0.88 7.54 -51.93 -0.39 0.49 16 38 H 0.05 0.71 8.02 -51.92 -0.42 0.30 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 43 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -32.43 345.93 -10.69 -43.12 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.53 Total: 4.31 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -2.09 Total: 7.45 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -1.33 Total: -60.95 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.43 -10.69 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408368137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.479 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds