Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99584 * 2 1 4 4 H 1.48496 * 109.46916 * 269.99220 * 3 2 1 5 5 H 1.48496 * 109.47135 * 29.99868 * 3 2 1 6 6 H 1.48500 * 109.46986 * 149.99813 * 3 2 1 7 7 C 1.37874 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99663 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00300 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00015 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99869 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.65096 * 4.97037 * 13 11 10 15 15 C 1.54912 * 104.83066 * 204.10540 * 14 13 11 16 16 C 1.55149 * 101.58188 * 322.99033 * 15 14 13 17 17 C 1.47027 * 125.64553 * 184.94624 * 13 11 10 18 18 H 1.08996 * 110.01047 * 59.47266 * 17 13 11 19 19 C 1.53000 * 109.88096 * 298.37973 * 17 13 11 20 20 N 1.46904 * 109.47008 * 171.98009 * 19 17 13 21 21 C 1.48535 * 110.99522 * 59.94460 * 20 19 17 22 22 C 1.54942 * 103.22640 * 159.71910 * 21 20 19 23 23 C 1.54592 * 102.91894 * 322.58645 * 22 21 20 24 24 C 1.47900 * 110.99892 * 177.33503 * 20 19 17 25 25 H 0.96994 * 120.00065 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47644 * 60.00037 * 9 7 2 27 27 H 1.08997 * 109.47467 * 299.99833 * 9 7 2 28 28 H 0.97004 * 119.99741 * 0.02562 * 10 9 7 29 29 H 1.09005 * 110.36354 * 85.26746 * 14 13 11 30 30 H 1.08997 * 110.36779 * 322.94863 * 14 13 11 31 31 H 1.09001 * 111.00086 * 204.91477 * 15 14 13 32 32 H 1.08996 * 111.00007 * 81.07198 * 15 14 13 33 33 H 1.09006 * 110.71844 * 153.86638 * 16 15 14 34 34 H 1.08999 * 110.72578 * 276.96150 * 16 15 14 35 35 H 1.08996 * 109.47151 * 291.98463 * 19 17 13 36 36 H 1.09001 * 109.47186 * 51.98700 * 19 17 13 37 37 H 1.08998 * 110.66859 * 278.15190 * 21 20 19 38 38 H 1.08998 * 110.66898 * 41.28361 * 21 20 19 39 39 H 1.08990 * 110.72295 * 204.22801 * 22 21 20 40 40 H 1.08995 * 110.87400 * 81.01452 * 22 21 20 41 41 H 1.09007 * 110.30917 * 263.03952 * 23 22 21 42 42 H 1.09002 * 110.31042 * 140.87257 * 23 22 21 43 43 H 1.08997 * 109.91827 * 333.51687 * 24 20 19 44 44 H 1.09004 * 109.91136 * 94.80902 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5586 -5.1056 0.0011 13 7 2.6299 -5.9076 0.0005 14 6 4.0955 -5.7851 0.1032 15 6 4.6480 -7.0778 -0.5475 16 6 3.6037 -8.1290 -0.0875 17 6 2.2820 -7.3325 -0.1020 18 1 1.7466 -7.5196 -1.0328 19 6 1.4139 -7.7431 1.0891 20 7 0.9135 -9.1088 0.8825 21 6 2.0359 -10.0732 0.7548 22 6 1.3710 -11.4355 1.0751 23 6 0.3702 -11.0762 2.1973 24 6 0.1209 -9.5643 2.0451 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 3.1569 -3.4353 0.0009 29 1 4.3990 -5.7269 1.1485 30 1 4.4419 -4.9076 -0.4427 31 1 5.6390 -7.3166 -0.1614 32 1 4.6640 -6.9922 -1.6339 33 1 3.5598 -8.9617 -0.7895 34 1 3.8315 -8.4850 0.9172 35 1 2.0091 -7.7083 2.0015 36 1 0.5715 -7.0572 1.1783 37 1 2.4336 -10.0685 -0.2601 38 1 2.8203 -9.8486 1.4775 39 1 2.1110 -12.1513 1.4328 40 1 0.8479 -11.8271 0.2027 41 1 0.8037 -11.2917 3.1740 42 1 -0.5603 -11.6283 2.0655 43 1 0.4467 -9.0417 2.9444 44 1 -0.9385 -9.3787 1.8678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408368138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -18.653286 kcal Electronic energy + Delta-G solvation = -22717.754223 eV Core-core repulsion = 19476.996809 eV Total energy + Delta-G solvation = -3240.757415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22238 -38.75502 -37.03459 -34.16087 -32.87139 -32.16245 -31.24427 -29.45442 -28.44645 -26.96004 -25.17849 -23.15035 -22.21101 -21.11208 -20.89152 -20.50548 -19.07176 -17.91720 -16.65475 -16.15108 -15.87402 -15.42542 -14.94618 -14.60111 -14.55602 -14.27821 -13.83335 -13.46504 -13.19284 -13.02879 -12.81339 -12.66322 -12.23949 -11.99251 -11.92739 -11.73964 -11.59961 -11.46659 -11.43392 -10.93587 -10.87516 -10.81085 -10.73883 -10.61494 -10.56239 -10.26525 -9.34363 -9.28570 -8.70064 -8.43961 -8.34024 -7.68397 -6.12884 -4.19381 3.12433 3.26181 3.32339 3.35004 3.91024 4.06389 4.33215 4.45078 4.53666 4.54707 4.57758 4.80074 4.83593 4.99989 5.13779 5.21158 5.23074 5.27305 5.35799 5.40970 5.45811 5.52872 5.64269 5.65628 5.68946 5.74335 5.76296 5.87486 5.89773 6.03115 6.04900 6.09852 6.27943 6.66714 6.86615 6.99155 7.26246 7.55245 7.60660 7.62670 7.92896 8.06464 8.79312 8.94939 9.36897 9.51716 10.97390 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.003468 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.760116 B = 8072.183636 C = 8795.535978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.711 3.289 12 O -0.592 6.592 13 N -0.641 5.641 14 C 0.101 3.899 15 C -0.133 4.133 16 C -0.134 4.134 17 C 0.164 3.836 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.512 5.512 21 C 0.023 3.977 22 C -0.126 4.126 23 C -0.131 4.131 24 C 0.036 3.964 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.385 0.615 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -21.347 2.339 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.413 3.587 12 O -0.471 6.471 13 N -0.382 5.382 14 C -0.022 4.022 15 C -0.171 4.171 16 C -0.172 4.172 17 C 0.059 3.941 18 H 0.098 0.902 19 C -0.093 4.093 20 N -0.236 5.236 21 C -0.105 4.105 22 C -0.164 4.164 23 C -0.169 4.169 24 C -0.092 4.092 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.803 -21.205 1.874 22.672 hybrid contribution 1.384 1.143 0.839 1.981 sum 9.187 -20.061 2.713 22.231 Atomic orbital electron populations 1.69979 1.06076 1.27237 1.48973 1.24942 0.94906 0.99361 0.94798 0.86419 0.79597 0.82707 0.78192 1.20478 1.21015 1.19794 1.21216 0.93217 0.90452 1.53068 0.92036 1.18980 0.87775 0.81019 0.97598 1.45759 1.10813 1.04232 1.77175 1.15699 0.84286 0.80391 0.78362 1.90870 1.13693 1.83695 1.58827 1.47664 1.05750 1.05062 1.79734 1.22189 0.81168 0.98652 1.00215 1.22788 0.98548 0.94575 1.01218 1.23123 0.94143 0.97793 1.02124 1.21147 0.94549 0.79758 0.98620 0.90240 1.22730 1.00064 0.90266 0.96230 1.64729 1.18681 1.01684 1.38523 1.23700 0.93431 0.91661 1.01670 1.22516 0.98140 0.96934 0.98830 1.22400 0.99929 0.95798 0.98773 1.22837 0.99633 0.94564 0.92125 0.92472 0.95727 0.95770 0.78198 0.92032 0.90827 0.90181 0.90547 0.89709 0.90638 0.95042 0.88328 0.89343 0.93543 0.91370 0.90800 0.91765 0.91093 0.93867 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.34 5.43 -5.19 -0.03 7.31 16 10 N -0.73 -16.34 5.51 -66.41 -0.37 -16.70 16 11 C 0.71 15.53 8.30 -86.92 -0.72 14.81 16 12 O -0.59 -15.29 15.11 5.29 0.08 -15.21 16 13 N -0.64 -10.57 3.07 -168.69 -0.52 -11.09 16 14 C 0.10 1.24 6.68 -2.53 -0.02 1.23 16 15 C -0.13 -1.22 7.08 -24.59 -0.17 -1.40 16 16 C -0.13 -1.30 4.50 -24.90 -0.11 -1.41 16 17 C 0.16 2.33 3.00 -66.95 -0.20 2.13 16 18 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.04 0.53 4.55 -3.82 -0.02 0.51 16 20 N -0.51 -6.48 5.34 -230.45 -1.23 -7.71 16 21 C 0.02 0.22 4.67 -1.89 -0.01 0.21 16 22 C -0.13 -1.03 7.06 -24.87 -0.18 -1.20 16 23 C -0.13 -1.13 6.93 -25.38 -0.18 -1.31 16 24 C 0.04 0.41 6.70 -2.76 -0.02 0.39 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.54 6.72 -40.82 -0.27 7.26 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.88 7.12 -51.93 -0.37 0.51 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.69 6.29 -51.93 -0.33 0.36 16 34 H 0.08 0.68 5.99 -51.93 -0.31 0.37 16 35 H 0.03 0.45 7.79 -51.93 -0.40 0.04 16 36 H 0.10 1.86 6.49 -51.93 -0.34 1.52 16 37 H 0.09 0.78 5.75 -51.93 -0.30 0.48 16 38 H 0.05 0.42 6.37 -51.93 -0.33 0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -32.95 338.49 -10.52 -43.47 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.24 Total: 4.15 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.07 Total: 7.66 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -1.38 Total: -61.24 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.08 Total: -15.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.95 -10.52 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408368138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.816 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds