Wall clock time and date at job start Tue Mar 31 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47011 * 2 1 4 4 C 1.46904 * 110.99916 * 189.99879 * 3 2 1 5 5 C 1.53243 * 109.33855 * 187.24971 * 4 3 2 6 6 N 1.47079 * 108.52152 * 306.16863 * 5 4 3 7 7 C 1.34767 * 120.88074 * 231.18470 * 6 5 4 8 8 O 1.21592 * 120.00422 * 354.99401 * 7 6 5 9 9 N 1.34780 * 120.00029 * 174.99168 * 7 6 5 10 10 C 1.46503 * 119.99916 * 185.05002 * 9 7 6 11 11 C 1.53002 * 109.46723 * 185.00778 * 10 9 7 12 12 C 1.50706 * 115.54907 * 275.57102 * 11 10 9 13 13 H 1.07992 * 119.99704 * 114.80959 * 12 11 10 14 14 C 1.37880 * 119.99955 * 294.79936 * 12 11 10 15 15 N 1.31514 * 120.00012 * 352.06565 * 14 12 11 16 16 Si 1.86794 * 119.99842 * 172.06244 * 14 12 11 17 17 H 1.48495 * 109.47222 * 90.00347 * 16 14 12 18 18 H 1.48504 * 109.47315 * 210.00714 * 16 14 12 19 19 H 1.48500 * 109.47184 * 330.00119 * 16 14 12 20 20 C 1.52998 * 117.49910 * 129.86715 * 11 10 9 21 21 C 1.52993 * 117.50133 * 61.24280 * 11 10 9 22 22 C 1.47078 * 118.23495 * 51.46163 * 6 5 4 23 23 C 1.46902 * 110.99953 * 314.29878 * 3 2 1 24 24 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47171 * 300.00314 * 1 2 3 26 26 H 1.08996 * 109.47097 * 60.00635 * 1 2 3 27 27 H 1.08998 * 109.47648 * 239.99851 * 2 1 3 28 28 H 1.09005 * 109.47080 * 119.99530 * 2 1 3 29 29 H 1.09002 * 109.49080 * 67.29101 * 4 3 2 30 30 H 1.08997 * 109.49390 * 307.20965 * 4 3 2 31 31 H 1.09001 * 109.62310 * 186.46052 * 5 4 3 32 32 H 1.08998 * 109.62377 * 65.88344 * 5 4 3 33 33 H 0.97000 * 119.99756 * 5.05039 * 9 7 6 34 34 H 1.08991 * 109.47299 * 305.00881 * 10 9 7 35 35 H 1.09002 * 109.47406 * 65.01030 * 10 9 7 36 36 H 0.97003 * 119.99721 * 185.00083 * 15 14 12 37 37 H 1.09009 * 117.49485 * 359.97438 * 20 11 10 38 38 H 1.08996 * 117.50310 * 145.01706 * 20 11 10 39 39 H 1.08994 * 117.50082 * 214.97549 * 21 11 10 40 40 H 1.09004 * 117.49413 * 359.97438 * 21 11 10 41 41 H 1.09006 * 109.62974 * 68.24912 * 22 6 5 42 42 H 1.08999 * 109.62458 * 188.82788 * 22 6 5 43 43 H 1.09007 * 109.49000 * 292.70776 * 23 3 2 44 44 H 1.08997 * 109.49420 * 52.75817 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4685 1.4311 -0.2381 5 6 3.9680 2.8678 -0.0514 6 7 3.1682 3.7556 -0.9090 7 6 3.7628 4.6257 -1.7490 8 8 4.9723 4.7493 -1.7403 9 7 3.0166 5.3589 -2.5989 10 6 3.6677 6.2223 -3.5873 11 6 2.6063 7.0315 -4.3353 12 6 1.9621 6.3339 -5.5056 13 1 0.9103 6.0906 -5.4769 14 6 2.7155 6.0064 -6.6129 15 7 3.9535 6.4379 -6.7169 16 14 1.9779 4.9498 -7.9652 17 1 1.3261 5.8220 -8.9749 18 1 3.0520 4.1569 -8.6155 19 1 0.9691 4.0303 -7.3803 20 6 2.8155 8.5434 -4.4416 21 6 1.7352 7.9839 -3.5139 22 6 1.7024 3.6730 -0.8209 23 6 1.2920 2.2006 -0.9816 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.6806 1.1016 -1.2553 30 1 3.9746 0.7752 0.4701 31 1 5.0178 2.9305 -0.3377 32 1 3.8515 3.1633 0.9913 33 1 2.0485 5.3149 -2.5560 34 1 4.3528 6.9020 -3.0809 35 1 4.2229 5.6083 -4.2964 36 1 4.4594 6.2692 -7.5272 37 1 3.7092 8.9616 -3.9782 38 1 2.4874 9.0338 -5.3580 39 1 0.6963 8.1063 -3.8200 40 1 1.9180 8.0337 -2.4404 41 1 1.3723 4.0445 0.1493 42 1 1.2537 4.2684 -1.6160 43 1 1.5345 1.8603 -1.9884 44 1 0.2197 2.1022 -0.8128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408383259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:40 Heat of formation + Delta-G solvation = 12.552018 kcal Electronic energy + Delta-G solvation = -22994.821178 eV Core-core repulsion = 19755.416926 eV Total energy + Delta-G solvation = -3239.404251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06763 -38.27778 -36.72520 -34.78037 -33.36972 -32.05425 -31.31911 -30.44051 -27.15675 -25.88510 -24.84882 -23.93494 -22.18998 -21.26938 -20.78846 -19.37779 -18.99266 -17.87884 -16.17062 -16.00464 -15.44963 -15.28762 -15.18395 -14.86498 -14.65064 -14.12912 -13.91391 -13.83952 -13.42467 -13.06203 -12.58301 -12.43242 -12.15568 -12.01640 -11.69630 -11.52066 -11.45754 -11.33178 -11.12351 -10.99629 -10.91620 -10.82340 -10.53649 -10.29508 -9.69115 -9.42303 -9.05350 -8.70615 -8.59782 -8.36244 -8.21063 -7.91007 -6.08514 -4.15076 3.03976 3.24769 3.33066 3.34372 3.66916 3.82874 4.34159 4.41994 4.73701 4.82702 4.93645 4.97830 5.14359 5.21580 5.22735 5.27883 5.32912 5.37546 5.46025 5.54605 5.68942 5.74796 5.83422 5.87033 5.92430 6.02045 6.05960 6.32309 6.48449 6.62867 6.66072 6.70168 6.81933 6.89096 6.94145 7.05933 7.32984 7.38016 7.52023 7.55817 7.83851 8.34741 8.58441 8.84333 9.19149 9.49573 10.99237 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.004801 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.664115 B = 5831.192546 C = 6543.162055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.041 3.959 5 C 0.138 3.862 6 N -0.638 5.638 7 C 0.702 3.298 8 O -0.600 6.600 9 N -0.726 5.726 10 C 0.181 3.819 11 C 0.034 3.966 12 C -0.499 4.499 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.873 5.873 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.164 4.164 21 C -0.208 4.208 22 C 0.118 3.882 23 C 0.033 3.967 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.392 0.608 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -10.122 13.047 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.088 4.088 5 C 0.014 3.986 6 N -0.378 5.378 7 C 0.403 3.597 8 O -0.479 6.479 9 N -0.381 5.381 10 C 0.058 3.942 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.509 5.509 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.202 4.202 21 C -0.246 4.246 22 C -0.006 4.006 23 C -0.096 4.096 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.228 0.772 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.197 -9.872 13.351 17.399 hybrid contribution -0.696 -0.901 -1.654 2.008 sum -5.893 -10.773 11.697 16.959 Atomic orbital electron populations 1.21952 0.94985 1.01899 1.02649 1.22082 0.95804 0.89105 1.00723 1.62049 1.03952 1.10554 1.49774 1.22537 0.88147 0.97829 1.00307 1.21424 0.96298 0.86941 0.93935 1.47300 1.06051 1.40792 1.43610 1.15959 0.85378 0.79256 0.79069 1.90862 1.12507 1.71139 1.73406 1.45476 1.09477 1.46892 1.36235 1.20887 0.94053 0.91747 0.87545 1.19082 0.94632 0.88018 0.94917 1.20408 0.95066 1.38433 0.99793 0.92180 1.24980 0.94655 0.95424 0.98064 1.69967 1.09296 1.44545 1.27106 0.86634 0.78831 0.80804 0.82012 1.20638 1.21142 1.19867 1.22706 0.97871 1.00073 0.99582 1.22876 0.96174 1.10086 0.95425 1.21768 0.80751 0.95799 1.02316 1.22720 0.99327 0.93503 0.94002 0.92243 0.91683 0.92126 0.94971 0.90681 0.94274 0.89801 0.88703 0.91495 0.77203 0.94273 0.90545 0.92759 0.91614 0.89986 0.90430 0.91463 0.90945 0.89686 0.94072 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.16 37.16 0.34 -0.86 16 2 C 0.05 0.45 5.99 -3.82 -0.02 0.43 16 3 N -0.54 -5.78 4.78 -234.01 -1.12 -6.90 16 4 C 0.04 0.46 5.58 -3.70 -0.02 0.44 16 5 C 0.14 1.86 6.58 -3.60 -0.02 1.83 16 6 N -0.64 -9.99 3.00 -177.91 -0.53 -10.52 16 7 C 0.70 14.14 8.31 -86.92 -0.72 13.42 16 8 O -0.60 -14.33 15.80 5.28 0.08 -14.25 16 9 N -0.73 -14.68 5.38 -65.22 -0.35 -15.03 16 10 C 0.18 4.29 5.53 -4.04 -0.02 4.27 16 11 C 0.03 0.82 1.32 -155.66 -0.21 0.61 16 12 C -0.50 -12.97 8.82 -34.44 -0.30 -13.28 16 13 H 0.06 1.54 7.83 -52.49 -0.41 1.12 16 14 C 0.07 1.95 5.22 -17.82 -0.09 1.86 16 15 N -0.87 -24.45 12.60 55.43 0.70 -23.75 16 16 Si 0.89 20.67 29.55 -169.99 -5.02 15.64 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.16 -3.73 9.88 -26.73 -0.26 -3.99 16 21 C -0.21 -4.28 9.78 -26.74 -0.26 -4.54 16 22 C 0.12 1.47 6.63 -3.37 -0.02 1.44 16 23 C 0.03 0.37 5.06 -3.46 -0.02 0.35 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 6.18 -51.93 -0.32 0.16 16 27 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.09 1.42 7.10 -51.93 -0.37 1.05 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.39 7.09 5.90 -40.82 -0.24 6.85 16 34 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 35 H 0.08 2.09 7.26 -51.93 -0.38 1.71 16 36 H 0.26 7.06 8.32 -40.82 -0.34 6.73 16 37 H 0.07 1.44 8.06 -51.92 -0.42 1.02 16 38 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.06 5.63 -51.93 -0.29 0.77 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.85 5.73 -51.93 -0.30 0.56 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -30.39 347.75 -9.98 -40.37 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.34 Total: 7.21 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.64 Total: 1.99 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -1.30 Total: -56.21 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.39 -9.98 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408383259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.920 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds