Wall clock time and date at job start Tue Mar 31 2020 05:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46962 * 2 1 4 4 C 1.53001 * 109.47104 * 240.00110 * 2 1 3 5 5 C 1.50699 * 109.47110 * 174.99745 * 4 2 1 6 6 H 1.08005 * 120.00452 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00225 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99813 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00097 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47028 * 120.00272 * 9 7 5 12 12 H 1.48499 * 109.47022 * 240.00097 * 9 7 5 13 13 N 1.46904 * 109.47259 * 120.00418 * 2 1 3 14 14 C 1.46902 * 110.99560 * 274.99993 * 13 2 1 15 15 H 1.08996 * 109.47381 * 35.00004 * 14 13 2 16 16 C 1.53004 * 109.47087 * 274.99998 * 14 13 2 17 17 C 1.50698 * 109.47036 * 155.00145 * 14 13 2 18 18 N 1.31132 * 126.55231 * 225.02520 * 17 14 13 19 19 C 1.34484 * 105.61843 * 180.02562 * 18 17 14 20 20 C 1.50700 * 126.28894 * 180.26504 * 19 18 17 21 21 C 1.53000 * 109.47101 * 179.70720 * 20 19 18 22 22 C 1.52989 * 109.47279 * 299.70635 * 20 19 18 23 23 C 1.53001 * 109.47016 * 59.71205 * 20 19 18 24 24 N 1.29954 * 107.42396 * 359.97438 * 19 18 17 25 25 O 1.21294 * 110.24985 * 0.02562 * 24 19 18 26 26 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47290 * 299.99557 * 1 2 3 28 28 H 1.09000 * 109.47042 * 59.99949 * 1 2 3 29 29 H 1.08993 * 109.47493 * 294.99706 * 4 2 1 30 30 H 1.09002 * 109.46883 * 55.00105 * 4 2 1 31 31 H 0.97002 * 120.00336 * 179.97438 * 8 7 5 32 32 H 1.00891 * 110.99936 * 38.94960 * 13 2 1 33 33 H 1.08999 * 109.47041 * 60.00344 * 16 14 13 34 34 H 1.09000 * 109.47362 * 180.02562 * 16 14 13 35 35 H 1.09000 * 109.46761 * 299.99789 * 16 14 13 36 36 H 1.09007 * 109.47206 * 59.99837 * 21 20 19 37 37 H 1.08998 * 109.47633 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.47591 * 299.99733 * 21 20 19 39 39 H 1.09003 * 109.47032 * 59.99822 * 22 20 19 40 40 H 1.09004 * 109.47173 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47366 * 300.00106 * 22 20 19 42 42 H 1.08992 * 109.47684 * 59.99789 * 23 20 19 43 43 H 1.09004 * 109.47017 * 179.97438 * 23 20 19 44 44 H 1.08995 * 109.46762 * 299.99483 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2305 -1.1934 -2.3579 8 7 3.5765 -1.8377 -3.2995 9 14 6.0922 -1.0622 -2.4362 10 1 6.5838 -0.2927 -1.2651 11 1 6.6855 -2.4233 -2.4181 12 1 6.4871 -0.3666 -3.6874 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2576 0.9328 2.2907 16 6 3.4111 0.9809 2.3223 17 6 1.9787 -0.5677 3.6258 18 7 1.2351 -0.2761 4.6659 19 6 1.4637 -1.2543 5.5600 20 6 0.8382 -1.3786 6.9255 21 6 1.3647 -2.6389 7.6148 22 6 1.1970 -0.1506 7.7645 23 6 -0.6823 -1.4726 6.7832 24 7 2.3183 -2.0761 5.0279 25 8 2.6269 -1.6996 3.9169 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7714 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 4.0608 -2.2445 -4.0350 32 1 1.4496 -1.4979 1.4100 33 1 3.4862 1.5525 1.3973 34 1 3.4579 1.6595 3.1740 35 1 4.2359 0.2705 2.3786 36 1 2.4480 -2.5720 7.7161 37 1 0.9120 -2.7291 8.6022 38 1 1.1090 -3.5139 7.0171 39 1 0.8219 0.7473 7.2733 40 1 0.7450 -0.2408 8.7523 41 1 2.2802 -0.0837 7.8658 42 1 -0.9380 -2.3474 6.1855 43 1 -1.1347 -1.5629 7.7708 44 1 -1.0574 -0.5747 6.2921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411527323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:57 Heat of formation + Delta-G solvation = 45.690601 kcal Electronic energy + Delta-G solvation = -22646.456258 eV Core-core repulsion = 19408.489003 eV Total energy + Delta-G solvation = -3237.967254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.48455 -37.85881 -37.59148 -34.96010 -33.54636 -32.16881 -30.77435 -28.15184 -27.60307 -27.57998 -27.23594 -24.47716 -24.32515 -23.00429 -21.62138 -19.79180 -19.34943 -17.92646 -17.23554 -16.27062 -15.57614 -15.35209 -15.16460 -14.45609 -14.37023 -14.18412 -13.92316 -12.98072 -12.79442 -12.73011 -12.51983 -12.48632 -12.23436 -11.96956 -11.93717 -11.79465 -11.73323 -11.65960 -11.46599 -11.41418 -11.25711 -11.06554 -10.97974 -10.81526 -10.62251 -10.43456 -10.09226 -9.85015 -9.31838 -8.98372 -8.25223 -7.84713 -5.87304 -3.84978 1.24069 2.26260 2.92872 3.39781 3.45490 3.47678 3.51751 3.92459 4.46000 4.57771 4.60913 4.68199 4.78002 5.05679 5.30454 5.32295 5.32657 5.35294 5.48714 5.50661 5.52378 5.56910 5.57530 5.67579 5.74049 5.79410 5.84229 5.88348 5.95534 5.97416 6.03447 6.07427 6.10173 6.35584 6.50250 6.55159 6.93202 7.36934 7.58749 7.87476 7.92611 8.12868 8.28266 8.58061 9.20339 9.76694 11.24878 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.003800 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.734830 B = 7367.317105 C = 7795.311963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.072 0.928 4 C 0.034 3.966 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.652 5.652 14 C 0.178 3.822 15 H 0.082 0.918 16 C -0.139 4.139 17 C 0.193 3.807 18 N -0.485 5.485 19 C 0.172 3.828 20 C 0.025 3.975 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.137 4.137 24 N -0.385 5.385 25 O 0.094 5.906 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.256 0.744 32 H 0.337 0.663 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 3.615 19.792 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.004 4.004 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.285 5.285 14 C 0.066 3.934 15 H 0.100 0.900 16 C -0.198 4.198 17 C -0.028 4.028 18 N -0.218 5.218 19 C -0.101 4.101 20 C 0.024 3.976 21 C -0.197 4.197 22 C -0.195 4.195 23 C -0.195 4.195 24 N -0.092 5.092 25 O 0.035 5.965 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.513 3.113 20.122 21.377 hybrid contribution 0.144 0.026 -0.156 0.214 sum -6.369 3.140 19.965 21.191 Atomic orbital electron populations 1.22589 0.99184 1.01481 1.00968 1.21933 0.90085 0.98475 0.91474 0.90975 1.19113 0.96435 0.95469 0.89345 1.21187 0.91730 1.32934 1.06860 0.92034 1.25001 0.97960 0.95890 0.96072 1.69968 1.35115 1.36990 1.12392 0.86593 0.86524 0.77595 0.77588 1.19770 1.21346 1.21491 1.60845 1.58434 1.07922 1.01287 1.20211 1.00466 0.91824 0.80924 0.90020 1.21868 0.95539 0.99897 1.02491 1.29100 0.88749 0.86765 0.98209 1.71817 1.23320 1.25709 1.00999 1.25703 0.96269 0.88710 0.99425 1.18946 0.95420 0.97726 0.85542 1.21830 1.01666 0.95972 1.00229 1.21846 1.01825 0.96602 0.99243 1.21848 0.92404 1.02874 1.02419 1.74649 1.17237 1.22674 0.94619 1.85377 1.52227 1.34269 1.24599 0.92914 0.94270 0.92005 0.96373 0.96138 0.93397 0.84451 0.89902 0.92778 0.90879 0.91975 0.91406 0.91939 0.91416 0.91327 0.92507 0.92470 0.91318 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.15 37.16 0.34 -2.53 16 2 C 0.09 1.65 2.34 -67.71 -0.16 1.49 16 3 H 0.07 1.32 7.11 -51.93 -0.37 0.95 16 4 C 0.03 0.82 4.65 -27.88 -0.13 0.69 16 5 C -0.49 -13.19 8.84 -34.44 -0.30 -13.49 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 N -0.65 -11.38 5.76 -100.95 -0.58 -11.97 16 14 C 0.18 2.62 2.97 -68.86 -0.20 2.42 16 15 H 0.08 1.12 7.11 -51.93 -0.37 0.75 16 16 C -0.14 -1.99 9.38 37.16 0.35 -1.64 16 17 C 0.19 2.93 7.00 -13.06 -0.09 2.84 16 18 N -0.48 -7.18 11.55 -9.87 -0.11 -7.30 16 19 C 0.17 2.43 6.40 -156.38 -1.00 1.43 16 20 C 0.03 0.27 0.99 -155.67 -0.15 0.11 16 21 C -0.14 -1.31 7.97 37.16 0.30 -1.02 16 22 C -0.14 -1.23 8.46 37.15 0.31 -0.92 16 23 C -0.14 -1.27 8.46 37.16 0.31 -0.95 16 24 N -0.39 -6.11 11.47 30.90 0.35 -5.75 16 25 O 0.09 1.55 11.31 18.10 0.20 1.76 16 26 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 27 H 0.04 0.54 7.43 -51.93 -0.39 0.15 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.34 5.75 8.09 -39.30 -0.32 5.43 16 33 H 0.08 1.22 7.43 -51.93 -0.39 0.83 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -30.15 361.65 -7.21 -37.36 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.71 Total: 0.19 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.53 Total: -10.25 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.39 Total: -51.26 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.15 -7.21 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411527323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.051 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds