Wall clock time and date at job start Tue Mar 31 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46962 * 2 1 4 4 C 1.53001 * 109.47104 * 240.00110 * 2 1 3 5 5 C 1.50699 * 109.47110 * 174.99745 * 4 2 1 6 6 H 1.08005 * 120.00452 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00225 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99813 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00097 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47028 * 120.00272 * 9 7 5 12 12 H 1.48499 * 109.47022 * 240.00097 * 9 7 5 13 13 N 1.46904 * 109.47259 * 120.00418 * 2 1 3 14 14 C 1.46902 * 110.99560 * 274.99993 * 13 2 1 15 15 H 1.08996 * 109.47381 * 35.00004 * 14 13 2 16 16 C 1.53004 * 109.47087 * 274.99998 * 14 13 2 17 17 C 1.50698 * 109.47036 * 155.00145 * 14 13 2 18 18 N 1.31132 * 126.55231 * 225.02520 * 17 14 13 19 19 C 1.34484 * 105.61843 * 180.02562 * 18 17 14 20 20 C 1.50700 * 126.28894 * 180.26504 * 19 18 17 21 21 C 1.53000 * 109.47101 * 179.70720 * 20 19 18 22 22 C 1.52989 * 109.47279 * 299.70635 * 20 19 18 23 23 C 1.53001 * 109.47016 * 59.71205 * 20 19 18 24 24 N 1.29954 * 107.42396 * 359.97438 * 19 18 17 25 25 O 1.21294 * 110.24985 * 0.02562 * 24 19 18 26 26 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47290 * 299.99557 * 1 2 3 28 28 H 1.09000 * 109.47042 * 59.99949 * 1 2 3 29 29 H 1.08993 * 109.47493 * 294.99706 * 4 2 1 30 30 H 1.09002 * 109.46883 * 55.00105 * 4 2 1 31 31 H 0.97002 * 120.00336 * 179.97438 * 8 7 5 32 32 H 1.00891 * 110.99936 * 38.94960 * 13 2 1 33 33 H 1.08999 * 109.47041 * 60.00344 * 16 14 13 34 34 H 1.09000 * 109.47362 * 180.02562 * 16 14 13 35 35 H 1.09000 * 109.46761 * 299.99789 * 16 14 13 36 36 H 1.09007 * 109.47206 * 59.99837 * 21 20 19 37 37 H 1.08998 * 109.47633 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.47591 * 299.99733 * 21 20 19 39 39 H 1.09003 * 109.47032 * 59.99822 * 22 20 19 40 40 H 1.09004 * 109.47173 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47366 * 300.00106 * 22 20 19 42 42 H 1.08992 * 109.47684 * 59.99789 * 23 20 19 43 43 H 1.09004 * 109.47017 * 179.97438 * 23 20 19 44 44 H 1.08995 * 109.46762 * 299.99483 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2305 -1.1934 -2.3579 8 7 3.5765 -1.8377 -3.2995 9 14 6.0922 -1.0622 -2.4362 10 1 6.5838 -0.2927 -1.2651 11 1 6.6855 -2.4233 -2.4181 12 1 6.4871 -0.3666 -3.6874 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2576 0.9328 2.2907 16 6 3.4111 0.9809 2.3223 17 6 1.9787 -0.5677 3.6258 18 7 1.2351 -0.2761 4.6659 19 6 1.4637 -1.2543 5.5600 20 6 0.8382 -1.3786 6.9255 21 6 1.3647 -2.6389 7.6148 22 6 1.1970 -0.1506 7.7645 23 6 -0.6823 -1.4726 6.7832 24 7 2.3183 -2.0761 5.0279 25 8 2.6269 -1.6996 3.9169 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7714 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 4.0608 -2.2445 -4.0350 32 1 1.4496 -1.4979 1.4100 33 1 3.4862 1.5525 1.3973 34 1 3.4579 1.6595 3.1740 35 1 4.2359 0.2705 2.3786 36 1 2.4480 -2.5720 7.7161 37 1 0.9120 -2.7291 8.6022 38 1 1.1090 -3.5139 7.0171 39 1 0.8219 0.7473 7.2733 40 1 0.7450 -0.2408 8.7523 41 1 2.2802 -0.0837 7.8658 42 1 -0.9380 -2.3474 6.1855 43 1 -1.1347 -1.5629 7.7708 44 1 -1.0574 -0.5747 6.2921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411527323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:56 Heat of formation + Delta-G solvation = 25.644561 kcal Electronic energy + Delta-G solvation = -22647.325519 eV Core-core repulsion = 19408.489003 eV Total energy + Delta-G solvation = -3238.836516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.64793 -39.01645 -38.70958 -36.15892 -35.12457 -33.90958 -32.03186 -29.72929 -28.83968 -28.35006 -28.27336 -25.59972 -25.55059 -24.84940 -22.77525 -21.33339 -20.36057 -19.11118 -18.47844 -18.20685 -16.94999 -16.62307 -16.31282 -16.13103 -15.36979 -15.18863 -14.97234 -14.55476 -14.25127 -13.68964 -13.62390 -13.57332 -13.46320 -13.18389 -13.17254 -13.10742 -12.78076 -12.71515 -12.66239 -12.57169 -12.49606 -12.38260 -12.30708 -12.22006 -11.95845 -11.83510 -11.78093 -11.20725 -11.03539 -10.92956 -10.43835 -9.23477 -8.04356 -6.07678 0.05443 1.14892 1.44503 1.46935 1.58274 1.75524 2.38930 2.52083 2.87675 3.26520 3.36742 3.65301 3.85509 3.94598 4.04356 4.12789 4.20414 4.30032 4.45085 4.55141 4.60264 4.64498 4.66800 4.74687 4.76774 4.79499 4.87778 4.88060 4.90533 4.99184 5.02571 5.18199 5.24417 5.25855 5.27146 5.31047 5.35935 5.56362 5.69046 5.95671 6.21697 6.38099 6.54064 7.07498 7.11055 7.57974 9.08234 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.003800 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.734830 B = 7367.317105 C = 7795.311963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H 0.079 0.921 4 C 0.037 3.963 5 C -0.491 4.491 6 H 0.066 0.934 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.952 3.048 10 H -0.261 1.261 11 H -0.290 1.290 12 H -0.284 1.284 13 N -0.669 5.669 14 C 0.185 3.815 15 H 0.102 0.898 16 C -0.136 4.136 17 C 0.193 3.807 18 N -0.486 5.486 19 C 0.176 3.824 20 C 0.019 3.981 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.133 4.133 24 N -0.405 5.405 25 O 0.069 5.931 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.063 0.937 29 H -0.012 1.012 30 H -0.002 1.002 31 H 0.256 0.744 32 H 0.337 0.663 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.098 0.902 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 4.833 22.182 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 H 0.098 0.902 4 C 0.000 4.000 5 C -0.530 4.530 6 H 0.085 0.915 7 C -0.204 4.204 8 N -0.586 5.586 9 Si 0.778 3.222 10 H -0.185 1.185 11 H -0.216 1.216 12 H -0.210 1.210 13 N -0.302 5.302 14 C 0.074 3.926 15 H 0.119 0.881 16 C -0.195 4.195 17 C -0.028 4.028 18 N -0.221 5.221 19 C -0.097 4.097 20 C 0.017 3.983 21 C -0.193 4.193 22 C -0.190 4.190 23 C -0.191 4.191 24 N -0.115 5.115 25 O 0.015 5.985 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.006 0.994 30 H 0.016 0.984 31 H 0.065 0.935 32 H 0.156 0.844 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.905 4.350 22.505 23.939 hybrid contribution 0.229 -0.357 -0.842 0.943 sum -6.675 3.992 21.663 23.017 Atomic orbital electron populations 1.22459 0.96708 1.01728 1.02382 1.21587 0.91986 0.97701 0.89501 0.90243 1.18991 0.95286 0.94153 0.91577 1.21598 0.93254 1.31786 1.06357 0.91537 1.25836 1.02511 0.95964 0.96050 1.70100 1.36858 1.38431 1.13219 0.85589 0.81199 0.77401 0.77980 1.18479 1.21626 1.21042 1.60655 1.58839 1.08654 1.02064 1.20207 1.01406 0.91350 0.79665 0.88104 1.21848 0.94578 0.99732 1.03325 1.29178 0.88664 0.86524 0.98463 1.71841 1.23190 1.25989 1.01046 1.26482 0.95145 0.87650 1.00408 1.19287 0.96120 0.99007 0.83903 1.21823 1.01189 0.94851 1.01447 1.21836 1.01543 0.95339 1.00313 1.21840 0.91323 1.01999 1.03940 1.74660 1.18540 1.23634 0.94694 1.85353 1.53000 1.34938 1.25191 0.93312 0.91567 0.91792 0.99355 0.98418 0.93523 0.84422 0.90252 0.90470 0.92571 0.93031 0.88398 0.93213 0.92100 0.88401 0.93271 0.93497 0.88360 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 9.15 71.98 0.66 -4.55 16 2 C 0.10 3.69 2.34 44.91 0.11 3.80 16 3 H 0.08 2.79 7.11 -2.38 -0.02 2.77 16 4 C 0.04 1.86 4.65 29.85 0.14 2.00 16 5 C -0.49 -26.78 8.84 25.60 0.23 -26.56 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 8 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 9 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 N -0.67 -23.03 5.76 -473.29 -2.73 -25.76 16 14 C 0.19 5.19 2.97 44.17 0.13 5.33 16 15 H 0.10 2.49 7.11 -2.39 -0.02 2.48 16 16 C -0.14 -3.69 9.38 71.98 0.68 -3.02 16 17 C 0.19 5.69 7.00 88.38 0.62 6.31 16 18 N -0.49 -13.75 11.55 -303.20 -3.50 -17.25 16 19 C 0.18 4.80 6.40 138.46 0.89 5.68 16 20 C 0.02 0.36 0.99 -52.93 -0.05 0.30 16 21 C -0.14 -2.30 7.97 71.98 0.57 -1.72 16 22 C -0.13 -2.04 8.46 71.98 0.61 -1.43 16 23 C -0.13 -2.13 8.46 71.98 0.61 -1.52 16 24 N -0.41 -12.76 11.47 -60.33 -0.69 -13.45 16 25 O 0.07 2.29 11.31 74.84 0.85 3.14 16 26 H 0.05 1.49 8.13 -2.38 -0.02 1.47 16 27 H 0.07 1.64 7.43 -2.39 -0.02 1.62 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.34 11.50 8.09 -89.70 -0.73 10.78 16 33 H 0.08 2.21 7.43 -2.39 -0.02 2.19 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.82 361.65 2.12 -63.70 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.24 Total: 15.30 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.64 Total: -15.37 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -6.64 Total: -113.83 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.85 Total: 3.14 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.82 2.12 -63.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411527323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.348 kcal (2) G-P(sol) polarization free energy of solvation -65.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds