Wall clock time and date at job start Tue Mar 31 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 C 1.50704 * 109.47341 * 185.00219 * 4 2 1 6 6 H 1.08005 * 119.99728 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99561 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00322 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47173 * 89.99676 * 9 7 5 11 11 H 1.48499 * 109.47118 * 209.99555 * 9 7 5 12 12 H 1.48497 * 109.46868 * 329.99627 * 9 7 5 13 13 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 14 14 C 1.46901 * 110.99870 * 85.00132 * 13 2 1 15 15 H 1.09000 * 109.46917 * 324.99892 * 14 13 2 16 16 C 1.52993 * 109.47269 * 84.99904 * 14 13 2 17 17 C 1.50692 * 109.46945 * 205.00102 * 14 13 2 18 18 N 1.31135 * 126.55554 * 134.99817 * 17 14 13 19 19 C 1.34489 * 105.61942 * 179.97438 * 18 17 14 20 20 C 1.50701 * 126.29104 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46910 * 60.00314 * 20 19 18 22 22 C 1.52995 * 109.47483 * 180.02562 * 20 19 18 23 23 C 1.53002 * 109.47247 * 300.00421 * 20 19 18 24 24 N 1.29952 * 107.42666 * 0.02562 * 19 18 17 25 25 O 1.21306 * 110.24780 * 359.70319 * 24 19 18 26 26 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 28 28 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 29 29 H 1.09006 * 109.47142 * 304.99743 * 4 2 1 30 30 H 1.08991 * 109.47453 * 64.99824 * 4 2 1 31 31 H 0.97008 * 120.00020 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99869 * 321.04843 * 13 2 1 33 33 H 1.09006 * 109.47343 * 180.02562 * 16 14 13 34 34 H 1.09004 * 109.47587 * 300.00069 * 16 14 13 35 35 H 1.09000 * 109.47161 * 60.00137 * 16 14 13 36 36 H 1.09001 * 109.47389 * 59.99944 * 21 20 19 37 37 H 1.09004 * 109.47367 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47612 * 300.00216 * 21 20 19 39 39 H 1.09005 * 109.47041 * 60.00050 * 22 20 19 40 40 H 1.08995 * 109.47663 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47435 * 300.00644 * 22 20 19 42 42 H 1.09000 * 109.46675 * 59.99566 * 23 20 19 43 43 H 1.08995 * 109.47321 * 179.97438 * 23 20 19 44 44 H 1.08999 * 109.46855 * 300.00169 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3127 6 1 4.0791 -0.0861 0.5392 7 6 4.2303 -1.1927 2.3582 8 7 5.5411 -1.1003 2.4134 9 14 3.3015 -2.1080 3.6957 10 1 3.1709 -3.5381 3.3177 11 1 4.0448 -2.0005 4.9768 12 1 1.9504 -1.5130 3.8559 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3469 15 1 1.2576 0.9330 -2.2907 16 6 3.4111 0.9809 -2.3224 17 6 1.9786 -0.5675 -3.6258 18 7 1.2354 -0.2757 -4.6661 19 6 1.4638 -1.2540 -5.5602 20 6 0.8423 -1.3754 -6.9277 21 6 1.2019 -0.1445 -7.7623 22 6 1.3721 -2.6333 -7.6189 23 6 -0.6785 -1.4718 -6.7902 24 7 2.3179 -2.0761 -5.0279 25 8 2.6306 -1.6968 -3.9189 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7715 1.2055 31 1 6.0255 -1.5071 3.1488 32 1 1.4495 -1.4979 -1.4101 33 1 3.4575 1.6603 -3.1735 34 1 3.4863 1.5525 -1.3973 35 1 4.2359 0.2706 -2.3786 36 1 2.2853 -0.0758 -7.8604 37 1 0.7520 -0.2321 -8.7514 38 1 0.8242 0.7515 -7.2698 39 1 1.1156 -3.5100 -7.0241 40 1 0.9230 -2.7209 -8.6082 41 1 2.4556 -2.5651 -7.7169 42 1 -1.0562 -0.5758 -6.2976 43 1 -1.1280 -1.5591 -7.7793 44 1 -0.9346 -2.3486 -6.1955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411527327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:59 Heat of formation + Delta-G solvation = 49.921404 kcal Electronic energy + Delta-G solvation = -22657.182264 eV Core-core repulsion = 19419.398471 eV Total energy + Delta-G solvation = -3237.783793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.47842 -37.86531 -37.66051 -34.98059 -33.57272 -32.15485 -30.83826 -28.46097 -27.60724 -27.58357 -27.56364 -24.47341 -24.35336 -22.74152 -21.56420 -19.81034 -19.35408 -17.92004 -17.22823 -16.58080 -15.71683 -15.37720 -15.22430 -14.45679 -14.27260 -14.07932 -13.99546 -13.08821 -12.74775 -12.68630 -12.54815 -12.48662 -12.41439 -12.12997 -11.96827 -11.89253 -11.75690 -11.72101 -11.65218 -11.44196 -11.26181 -11.19086 -11.05373 -10.82754 -10.73462 -10.17612 -9.95011 -9.74654 -9.61396 -9.05064 -8.41138 -7.91409 -5.89777 -3.83904 1.24228 2.26208 2.92959 3.37906 3.44680 3.45708 3.46771 3.91971 4.43634 4.55845 4.61008 4.65914 4.77606 5.05615 5.29087 5.32297 5.32740 5.35438 5.45306 5.48838 5.51026 5.55025 5.57392 5.57697 5.67998 5.74233 5.77421 5.86307 5.94308 5.97400 6.03345 6.07160 6.12633 6.28792 6.40195 6.57111 6.72772 7.11605 7.18166 7.60301 7.74919 7.94014 8.28345 8.71659 9.21226 9.73307 11.24080 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.003691 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.486601 B = 7583.420024 C = 7758.607723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.098 3.902 3 H 0.078 0.922 4 C -0.003 4.003 5 C -0.491 4.491 6 H 0.080 0.920 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.652 5.652 14 C 0.180 3.820 15 H 0.082 0.918 16 C -0.139 4.139 17 C 0.192 3.808 18 N -0.484 5.484 19 C 0.172 3.828 20 C 0.026 3.974 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.137 4.137 24 N -0.385 5.385 25 O 0.095 5.905 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.020 0.980 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.336 0.664 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 2.075 -17.968 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.011 4.011 3 H 0.096 0.904 4 C -0.041 4.041 5 C -0.529 4.529 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.284 5.284 14 C 0.068 3.932 15 H 0.100 0.900 16 C -0.198 4.198 17 C -0.029 4.029 18 N -0.218 5.218 19 C -0.101 4.101 20 C 0.024 3.976 21 C -0.195 4.195 22 C -0.197 4.197 23 C -0.195 4.195 24 N -0.091 5.091 25 O 0.036 5.964 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.155 0.845 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.899 1.614 -18.341 21.396 hybrid contribution -1.253 -0.526 0.792 1.573 sum -12.152 1.087 -17.549 21.374 Atomic orbital electron populations 1.22627 0.99091 1.01515 1.01295 1.21690 0.89925 0.98639 0.90806 0.90359 1.19604 0.98068 0.95179 0.91244 1.21035 0.89342 1.34019 1.08520 0.90213 1.24999 0.94657 0.96277 0.97857 1.69909 1.06396 1.46170 1.32308 0.86895 0.80320 0.80706 0.81931 1.20602 1.21749 1.19363 1.60760 1.58331 1.07957 1.01362 1.20192 1.00635 0.91652 0.80738 0.90014 1.21867 0.95435 0.99954 1.02533 1.29077 0.88659 0.86905 0.98213 1.71816 1.23464 1.25622 1.00940 1.25703 0.96383 0.88636 0.99422 1.18945 0.95428 0.97750 0.85499 1.21847 1.01865 0.96546 0.99267 1.21829 1.01698 0.95979 1.00197 1.21849 0.92445 1.02826 1.02412 1.74657 1.17112 1.22616 0.94728 1.85390 1.51862 1.34388 1.24744 0.92928 0.91975 0.93847 0.96230 0.96928 0.93086 0.84508 0.92791 0.89815 0.90645 0.92464 0.91328 0.91418 0.91952 0.91408 0.91947 0.91445 0.91324 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 9.15 37.16 0.34 -2.37 16 2 C 0.10 1.75 2.34 -67.71 -0.16 1.59 16 3 H 0.08 1.39 7.11 -51.93 -0.37 1.02 16 4 C 0.00 -0.07 3.72 -27.88 -0.10 -0.18 16 5 C -0.49 -13.36 9.39 -34.44 -0.32 -13.68 16 6 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -27.87 13.96 55.43 0.77 -27.09 16 9 Si 0.87 21.61 27.47 -169.99 -4.67 16.95 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 N -0.65 -11.18 5.76 -100.96 -0.58 -11.77 16 14 C 0.18 2.65 2.97 -68.87 -0.20 2.44 16 15 H 0.08 1.10 7.11 -51.93 -0.37 0.73 16 16 C -0.14 -2.07 9.38 37.15 0.35 -1.72 16 17 C 0.19 2.93 7.00 -13.05 -0.09 2.84 16 18 N -0.48 -7.16 11.55 -9.86 -0.11 -7.27 16 19 C 0.17 2.42 6.40 -156.37 -1.00 1.42 16 20 C 0.03 0.27 0.99 -155.66 -0.15 0.12 16 21 C -0.14 -1.24 8.46 37.16 0.31 -0.93 16 22 C -0.14 -1.32 7.97 37.15 0.30 -1.02 16 23 C -0.14 -1.25 8.45 37.16 0.31 -0.94 16 24 N -0.38 -6.13 11.47 30.91 0.35 -5.77 16 25 O 0.09 1.58 11.31 18.08 0.20 1.78 16 26 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.56 7.43 -51.93 -0.39 0.17 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 30 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.34 5.52 8.09 -39.29 -0.32 5.20 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.30 7.43 -51.93 -0.39 0.91 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -30.73 358.05 -6.83 -37.57 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.68 Total: 0.95 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.52 Total: -10.74 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.43 Total: -51.90 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.20 Total: 1.78 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.73 -6.83 -37.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411527327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.487 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds