Wall clock time and date at job start Tue Mar 31 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47381 * 2 1 4 4 N 1.46901 * 109.47126 * 120.00031 * 2 1 3 5 5 C 1.46900 * 111.00341 * 267.64349 * 4 2 1 6 6 H 1.09001 * 109.46477 * 332.13807 * 5 4 2 7 7 C 1.52998 * 109.46939 * 92.13885 * 5 4 2 8 8 C 1.52995 * 109.46977 * 212.14177 * 5 4 2 9 9 C 1.50696 * 109.47598 * 64.99974 * 8 5 4 10 10 H 1.08000 * 119.99674 * 359.97438 * 9 8 5 11 11 C 1.37873 * 120.00488 * 179.97438 * 9 8 5 12 12 N 1.31521 * 120.00319 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00093 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47541 * 89.99748 * 13 11 9 15 15 H 1.48502 * 109.47445 * 210.00067 * 13 11 9 16 16 H 1.48510 * 109.47111 * 330.00071 * 13 11 9 17 17 C 1.50698 * 109.47342 * 239.99959 * 2 1 3 18 18 N 1.31130 * 126.54943 * 104.71067 * 17 2 1 19 19 C 1.34500 * 105.61587 * 179.97438 * 18 17 2 20 20 C 1.50695 * 126.29252 * 180.12724 * 19 18 17 21 21 C 1.52994 * 109.47429 * 180.23668 * 20 19 18 22 22 C 1.53004 * 109.46992 * 300.24336 * 20 19 18 23 23 C 1.53006 * 109.46767 * 60.23936 * 20 19 18 24 24 N 1.29948 * 107.42133 * 0.35150 * 19 18 17 25 25 O 1.21302 * 110.25141 * 359.77931 * 24 19 18 26 26 H 1.09001 * 109.47116 * 305.91338 * 1 2 3 27 27 H 1.08999 * 109.47136 * 65.91459 * 1 2 3 28 28 H 1.09002 * 109.47098 * 185.91671 * 1 2 3 29 29 H 1.00904 * 110.99825 * 31.59905 * 4 2 1 30 30 H 1.09007 * 109.46621 * 174.08891 * 7 5 4 31 31 H 1.09000 * 109.47245 * 294.08545 * 7 5 4 32 32 H 1.09003 * 109.47226 * 54.09324 * 7 5 4 33 33 H 1.09007 * 109.47183 * 184.99809 * 8 5 4 34 34 H 1.09000 * 109.47545 * 304.99615 * 8 5 4 35 35 H 0.96996 * 120.00349 * 179.97438 * 12 11 9 36 36 H 1.09001 * 109.47225 * 60.00524 * 21 20 19 37 37 H 1.08997 * 109.47348 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47311 * 300.00325 * 21 20 19 39 39 H 1.09000 * 109.47467 * 59.99667 * 22 20 19 40 40 H 1.08997 * 109.46983 * 179.97438 * 22 20 19 41 41 H 1.09000 * 109.46530 * 299.99281 * 22 20 19 42 42 H 1.08994 * 109.47265 * 60.00373 * 23 20 19 43 43 H 1.09004 * 109.46668 * 180.02562 * 23 20 19 44 44 H 1.09000 * 109.47183 * 300.00021 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.2483 0.2553 2.2982 6 1 2.4872 1.2365 1.8877 7 6 0.9858 0.3551 3.1566 8 6 3.4137 -0.2345 3.1600 9 6 4.6824 -0.2158 2.3469 10 1 4.6596 0.1121 1.3182 11 6 5.8721 -0.6175 2.9162 12 7 6.9792 -0.6017 2.2065 13 14 5.9116 -1.1841 4.6957 14 1 5.6759 -2.6491 4.7542 15 1 7.2385 -0.8723 5.2852 16 1 4.8518 -0.4813 5.4627 17 6 2.0323 -0.7104 -1.2304 18 7 2.5449 -0.1515 -2.3002 19 6 2.8491 -1.1666 -3.1285 20 6 3.4695 -1.0463 -4.4966 21 6 3.6428 -2.4404 -5.1025 22 6 2.5598 -0.2081 -5.3971 23 6 4.8359 -0.3679 -4.3790 24 7 2.5054 -2.2700 -2.5343 25 8 2.0341 -2.0298 -1.4427 26 1 -0.3633 0.6028 0.8323 27 1 -0.3633 0.4194 -0.9382 28 1 -0.3633 -1.0222 0.1059 29 1 1.3837 -1.4242 1.4795 30 1 1.1882 0.9758 4.0296 31 1 0.1827 0.8026 2.5711 32 1 0.6872 -0.6418 3.4810 33 1 3.5266 0.4200 4.0244 34 1 3.2136 -1.2513 3.4978 35 1 7.8163 -0.8839 2.6071 36 1 2.6694 -2.9237 -5.1863 37 1 4.0920 -2.3533 -6.0918 38 1 4.2909 -3.0374 -4.4609 39 1 2.4364 0.7851 -4.9654 40 1 3.0087 -0.1207 -6.3865 41 1 1.5865 -0.6915 -5.4809 42 1 5.4840 -0.9649 -3.7374 43 1 5.2844 -0.2804 -5.3686 44 1 4.7125 0.6254 -3.9473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411527328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:02 Heat of formation + Delta-G solvation = 50.607144 kcal Electronic energy + Delta-G solvation = -22887.339776 eV Core-core repulsion = 19649.585719 eV Total energy + Delta-G solvation = -3237.754057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.15506 -37.80617 -37.53263 -34.73491 -33.54694 -32.10127 -30.73028 -28.23255 -27.82246 -27.37920 -27.28035 -24.23171 -24.15203 -22.73091 -21.62667 -19.94962 -19.16614 -17.65560 -16.96277 -16.58045 -15.63068 -15.16641 -14.97094 -14.31290 -14.19056 -13.97953 -13.89248 -13.26484 -12.92925 -12.63761 -12.48107 -12.33344 -12.26046 -12.20581 -12.02425 -11.72259 -11.70520 -11.52535 -11.41314 -11.36389 -11.21595 -11.06677 -10.80816 -10.72076 -10.52398 -10.19321 -9.87907 -9.63424 -9.50907 -9.04912 -8.41422 -7.95576 -5.89699 -3.84335 1.57717 2.59660 3.24036 3.37508 3.44608 3.45841 3.72185 4.16169 4.55102 4.60814 4.82456 4.86964 4.98867 5.02453 5.17094 5.33509 5.44273 5.48312 5.53545 5.55003 5.61119 5.64280 5.70228 5.76570 5.81288 5.83865 5.85838 5.88987 5.97502 6.01329 6.17005 6.21994 6.26396 6.34509 6.39975 6.42580 6.71054 7.12165 7.17190 7.61321 7.79227 7.95275 8.58458 8.71027 9.20224 9.72712 11.24444 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.005058 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.563262 B = 5534.528647 C = 6749.407929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.177 3.823 3 H 0.120 0.880 4 N -0.657 5.657 5 C 0.101 3.899 6 H 0.074 0.926 7 C -0.184 4.184 8 C -0.004 4.004 9 C -0.491 4.491 10 H 0.073 0.927 11 C 0.061 3.939 12 N -0.908 5.908 13 Si 0.876 3.124 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.268 1.268 17 C 0.215 3.785 18 N -0.485 5.485 19 C 0.176 3.824 20 C 0.026 3.974 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.139 4.139 24 N -0.390 5.390 25 O 0.083 5.917 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.343 0.657 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 1.077 -10.298 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.064 3.936 3 H 0.137 0.863 4 N -0.289 5.289 5 C -0.008 4.008 6 H 0.092 0.908 7 C -0.243 4.243 8 C -0.042 4.042 9 C -0.529 4.529 10 H 0.091 0.909 11 C -0.139 4.139 12 N -0.548 5.548 13 Si 0.704 3.296 14 H -0.206 1.206 15 H -0.217 1.217 16 H -0.193 1.193 17 C -0.006 4.006 18 N -0.219 5.219 19 C -0.097 4.097 20 C 0.024 3.976 21 C -0.196 4.196 22 C -0.193 4.193 23 C -0.197 4.197 24 N -0.098 5.098 25 O 0.026 5.974 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.385 0.570 -11.085 16.631 hybrid contribution -0.643 -0.252 1.449 1.605 sum -13.028 0.318 -9.636 16.208 Atomic orbital electron populations 1.22649 0.94701 1.03287 1.03368 1.20047 0.92705 0.96581 0.84285 0.86262 1.60238 1.50966 1.13467 1.04191 1.21690 0.94331 0.94783 0.89980 0.90795 1.22688 0.98731 1.01779 1.01100 1.19624 0.93826 0.95916 0.94806 1.20994 0.89954 1.42585 0.99413 0.90867 1.25017 0.95810 0.95738 0.97304 1.69922 0.99052 1.49385 1.36476 0.86855 0.77073 0.79331 0.86340 1.20570 1.21729 1.19272 1.28841 0.94183 0.80899 0.96716 1.71755 1.17234 1.30774 1.02102 1.25597 1.00670 0.83933 0.99489 1.18921 0.95518 0.97575 0.85567 1.21818 1.02544 0.94568 1.00674 1.21833 0.98620 1.00142 0.98734 1.21860 0.94144 1.01486 1.02228 1.74559 1.16355 1.24046 0.94791 1.85253 1.58196 1.27151 1.26838 0.90348 0.91719 0.91505 0.83741 0.92055 0.93464 0.92701 0.96288 0.96782 0.93093 0.92223 0.91550 0.91848 0.91435 0.91476 0.92763 0.92079 0.91541 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.02 37.16 0.34 -1.58 16 2 C 0.18 2.60 3.18 -68.87 -0.22 2.39 16 3 H 0.12 1.79 7.22 -51.93 -0.37 1.42 16 4 N -0.66 -11.15 5.77 -100.96 -0.58 -11.74 16 5 C 0.10 1.78 2.58 -67.72 -0.17 1.60 16 6 H 0.07 1.33 7.22 -51.93 -0.37 0.96 16 7 C -0.18 -2.47 9.04 37.16 0.34 -2.14 16 8 C 0.00 -0.09 3.72 -27.89 -0.10 -0.19 16 9 C -0.49 -13.89 9.39 -34.44 -0.32 -14.21 16 10 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 11 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 12 N -0.91 -28.76 13.96 55.43 0.77 -27.99 16 13 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 17 C 0.22 3.72 7.35 -13.06 -0.10 3.62 16 18 N -0.49 -8.68 11.55 -9.87 -0.11 -8.80 16 19 C 0.18 3.02 6.40 -156.37 -1.00 2.02 16 20 C 0.03 0.35 0.99 -155.66 -0.15 0.20 16 21 C -0.14 -1.65 7.97 37.15 0.30 -1.36 16 22 C -0.14 -1.49 8.46 37.16 0.31 -1.17 16 23 C -0.14 -1.85 8.46 37.16 0.31 -1.54 16 24 N -0.39 -7.13 11.47 30.90 0.35 -6.78 16 25 O 0.08 1.51 11.31 18.11 0.20 1.72 16 26 H 0.08 0.72 6.03 -51.93 -0.31 0.41 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.67 8.00 -51.93 -0.42 0.25 16 29 H 0.34 5.09 7.82 -39.29 -0.31 4.78 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.52 6.03 -51.93 -0.31 0.21 16 32 H 0.05 0.70 8.00 -51.93 -0.42 0.28 16 33 H 0.02 0.43 7.20 -51.92 -0.37 0.06 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -33.17 355.28 -6.77 -39.95 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.52 Total: 1.62 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.57 Total: -10.67 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.43 Total: -55.30 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.20 Total: 1.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.17 -6.77 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411527328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.553 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds