Wall clock time and date at job start Tue Mar 31 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47381 * 2 1 4 4 N 1.46901 * 109.47126 * 120.00031 * 2 1 3 5 5 C 1.46900 * 111.00341 * 267.64349 * 4 2 1 6 6 H 1.09001 * 109.46477 * 332.13807 * 5 4 2 7 7 C 1.52998 * 109.46939 * 92.13885 * 5 4 2 8 8 C 1.52995 * 109.46977 * 212.14177 * 5 4 2 9 9 C 1.50696 * 109.47598 * 64.99974 * 8 5 4 10 10 H 1.08000 * 119.99674 * 359.97438 * 9 8 5 11 11 C 1.37873 * 120.00488 * 179.97438 * 9 8 5 12 12 N 1.31521 * 120.00319 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00093 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47541 * 89.99748 * 13 11 9 15 15 H 1.48502 * 109.47445 * 210.00067 * 13 11 9 16 16 H 1.48510 * 109.47111 * 330.00071 * 13 11 9 17 17 C 1.50698 * 109.47342 * 239.99959 * 2 1 3 18 18 N 1.31130 * 126.54943 * 104.71067 * 17 2 1 19 19 C 1.34500 * 105.61587 * 179.97438 * 18 17 2 20 20 C 1.50695 * 126.29252 * 180.12724 * 19 18 17 21 21 C 1.52994 * 109.47429 * 180.23668 * 20 19 18 22 22 C 1.53004 * 109.46992 * 300.24336 * 20 19 18 23 23 C 1.53006 * 109.46767 * 60.23936 * 20 19 18 24 24 N 1.29948 * 107.42133 * 0.35150 * 19 18 17 25 25 O 1.21302 * 110.25141 * 359.77931 * 24 19 18 26 26 H 1.09001 * 109.47116 * 305.91338 * 1 2 3 27 27 H 1.08999 * 109.47136 * 65.91459 * 1 2 3 28 28 H 1.09002 * 109.47098 * 185.91671 * 1 2 3 29 29 H 1.00904 * 110.99825 * 31.59905 * 4 2 1 30 30 H 1.09007 * 109.46621 * 174.08891 * 7 5 4 31 31 H 1.09000 * 109.47245 * 294.08545 * 7 5 4 32 32 H 1.09003 * 109.47226 * 54.09324 * 7 5 4 33 33 H 1.09007 * 109.47183 * 184.99809 * 8 5 4 34 34 H 1.09000 * 109.47545 * 304.99615 * 8 5 4 35 35 H 0.96996 * 120.00349 * 179.97438 * 12 11 9 36 36 H 1.09001 * 109.47225 * 60.00524 * 21 20 19 37 37 H 1.08997 * 109.47348 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47311 * 300.00325 * 21 20 19 39 39 H 1.09000 * 109.47467 * 59.99667 * 22 20 19 40 40 H 1.08997 * 109.46983 * 179.97438 * 22 20 19 41 41 H 1.09000 * 109.46530 * 299.99281 * 22 20 19 42 42 H 1.08994 * 109.47265 * 60.00373 * 23 20 19 43 43 H 1.09004 * 109.46668 * 180.02562 * 23 20 19 44 44 H 1.09000 * 109.47183 * 300.00021 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.2483 0.2553 2.2982 6 1 2.4872 1.2365 1.8877 7 6 0.9858 0.3551 3.1566 8 6 3.4137 -0.2345 3.1600 9 6 4.6824 -0.2158 2.3469 10 1 4.6596 0.1121 1.3182 11 6 5.8721 -0.6175 2.9162 12 7 6.9792 -0.6017 2.2065 13 14 5.9116 -1.1841 4.6957 14 1 5.6759 -2.6491 4.7542 15 1 7.2385 -0.8723 5.2852 16 1 4.8518 -0.4813 5.4627 17 6 2.0323 -0.7104 -1.2304 18 7 2.5449 -0.1515 -2.3002 19 6 2.8491 -1.1666 -3.1285 20 6 3.4695 -1.0463 -4.4966 21 6 3.6428 -2.4404 -5.1025 22 6 2.5598 -0.2081 -5.3971 23 6 4.8359 -0.3679 -4.3790 24 7 2.5054 -2.2700 -2.5343 25 8 2.0341 -2.0298 -1.4427 26 1 -0.3633 0.6028 0.8323 27 1 -0.3633 0.4194 -0.9382 28 1 -0.3633 -1.0222 0.1059 29 1 1.3837 -1.4242 1.4795 30 1 1.1882 0.9758 4.0296 31 1 0.1827 0.8026 2.5711 32 1 0.6872 -0.6418 3.4810 33 1 3.5266 0.4200 4.0244 34 1 3.2136 -1.2513 3.4978 35 1 7.8163 -0.8839 2.6071 36 1 2.6694 -2.9237 -5.1863 37 1 4.0920 -2.3533 -6.0918 38 1 4.2909 -3.0374 -4.4609 39 1 2.4364 0.7851 -4.9654 40 1 3.0087 -0.1207 -6.3865 41 1 1.5865 -0.6915 -5.4809 42 1 5.4840 -0.9649 -3.7374 43 1 5.2844 -0.2804 -5.3686 44 1 4.7125 0.6254 -3.9473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411527328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:01 Heat of formation + Delta-G solvation = 26.219193 kcal Electronic energy + Delta-G solvation = -22888.397317 eV Core-core repulsion = 19649.585719 eV Total energy + Delta-G solvation = -3238.811598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.51868 -39.10112 -38.67506 -36.09969 -35.15565 -33.96078 -32.13330 -29.84086 -29.09527 -28.35175 -28.28516 -25.51434 -25.37328 -24.60256 -22.84785 -21.50187 -20.35055 -19.04110 -18.77514 -18.27198 -17.01076 -16.40964 -16.24600 -15.99712 -15.42756 -15.20265 -14.99084 -14.75826 -14.37951 -13.89051 -13.75944 -13.57217 -13.47838 -13.39191 -13.32104 -13.15408 -12.73258 -12.63645 -12.59114 -12.54051 -12.49013 -12.41484 -12.23492 -11.92903 -11.88167 -11.77244 -11.67998 -11.37145 -11.16979 -10.83652 -10.67704 -9.24751 -8.17681 -6.16916 0.21290 1.25852 1.38083 1.39757 1.50648 1.93755 2.42589 2.50131 2.93582 3.17808 3.43760 3.72063 3.85080 3.93548 3.97658 4.07083 4.20719 4.31891 4.42844 4.58318 4.60335 4.63659 4.66086 4.74149 4.75409 4.84532 4.86359 4.86687 4.92908 5.00942 5.02746 5.12567 5.18937 5.23158 5.25539 5.29335 5.31225 5.38391 5.53044 5.77141 6.18134 6.43683 6.64983 6.91864 7.21750 7.44096 9.00358 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.005058 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.563262 B = 5534.528647 C = 6749.407929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.181 3.819 3 H 0.111 0.889 4 N -0.685 5.685 5 C 0.107 3.893 6 H 0.062 0.938 7 C -0.172 4.172 8 C -0.005 4.005 9 C -0.488 4.488 10 H 0.024 0.976 11 C -0.011 4.011 12 N -0.965 5.965 13 Si 0.950 3.050 14 H -0.275 1.275 15 H -0.292 1.292 16 H -0.239 1.239 17 C 0.210 3.790 18 N -0.507 5.507 19 C 0.172 3.828 20 C 0.019 3.981 21 C -0.133 4.133 22 C -0.127 4.127 23 C -0.135 4.135 24 N -0.411 5.411 25 O 0.067 5.933 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.355 0.645 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.017 0.983 35 H 0.259 0.741 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.102 0.898 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 1.236 -9.725 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.129 0.871 4 N -0.318 5.318 5 C -0.002 4.002 6 H 0.080 0.920 7 C -0.230 4.230 8 C -0.043 4.043 9 C -0.526 4.526 10 H 0.042 0.958 11 C -0.205 4.205 12 N -0.608 5.608 13 Si 0.775 3.225 14 H -0.201 1.201 15 H -0.219 1.219 16 H -0.162 1.162 17 C -0.011 4.011 18 N -0.241 5.241 19 C -0.101 4.101 20 C 0.017 3.983 21 C -0.190 4.190 22 C -0.185 4.185 23 C -0.193 4.193 24 N -0.122 5.122 25 O 0.014 5.986 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.176 0.824 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.121 0.879 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.793 0.737 -10.486 18.148 hybrid contribution 0.146 -0.264 1.156 1.195 sum -14.647 0.472 -9.330 17.373 Atomic orbital electron populations 1.22553 0.90796 1.04501 1.04713 1.20170 0.95499 0.95250 0.82304 0.87115 1.59973 1.52651 1.14411 1.04757 1.21455 0.94795 0.93835 0.90103 0.91964 1.22534 0.96905 1.02927 1.00655 1.19628 0.93185 0.96417 0.95066 1.21327 0.92578 1.40847 0.97877 0.95775 1.26052 0.95332 0.96324 1.02756 1.70119 0.99938 1.51670 1.39048 0.85660 0.77725 0.79016 0.80112 1.20079 1.21869 1.16179 1.29531 0.93454 0.80751 0.97406 1.71775 1.18005 1.31444 1.02827 1.26403 0.99687 0.83366 1.00628 1.19258 0.95673 0.99073 0.84326 1.21798 1.02341 0.93139 1.01744 1.21796 0.98373 0.98881 0.99464 1.21850 0.93982 0.99925 1.03592 1.74531 1.17660 1.24814 0.95171 1.85209 1.58727 1.27605 1.27082 0.88120 0.90971 0.90513 0.82386 0.91663 0.90433 0.91583 0.95546 0.96438 0.93262 0.92258 0.88251 0.93983 0.92411 0.88341 0.92552 0.94807 0.87906 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.02 71.98 0.65 -2.48 16 2 C 0.18 5.26 3.18 44.17 0.14 5.40 16 3 H 0.11 3.38 7.22 -2.39 -0.02 3.36 16 4 N -0.68 -22.90 5.77 -473.33 -2.73 -25.63 16 5 C 0.11 3.63 2.58 44.91 0.12 3.75 16 6 H 0.06 2.23 7.22 -2.39 -0.02 2.21 16 7 C -0.17 -3.97 9.04 71.98 0.65 -3.32 16 8 C -0.01 -0.23 3.72 29.85 0.11 -0.12 16 9 C -0.49 -28.37 9.39 25.60 0.24 -28.13 16 10 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 11 C -0.01 -0.64 5.47 84.65 0.46 -0.18 16 12 N -0.96 -63.63 13.96 21.45 0.30 -63.33 16 13 Si 0.95 45.56 27.47 68.60 1.88 47.45 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 17 C 0.21 7.44 7.35 88.38 0.65 8.09 16 18 N -0.51 -18.77 11.55 -303.19 -3.50 -22.27 16 19 C 0.17 6.07 6.40 138.46 0.89 6.95 16 20 C 0.02 0.49 0.99 -52.93 -0.05 0.44 16 21 C -0.13 -3.06 7.97 71.98 0.57 -2.49 16 22 C -0.13 -2.60 8.46 71.98 0.61 -1.99 16 23 C -0.14 -3.64 8.46 71.98 0.61 -3.03 16 24 N -0.41 -15.55 11.47 -60.30 -0.69 -16.24 16 25 O 0.07 2.54 11.31 74.86 0.85 3.39 16 26 H 0.10 1.46 6.03 -2.39 -0.01 1.44 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 29 H 0.35 10.00 7.82 -89.69 -0.70 9.30 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 1.35 6.03 -2.39 -0.01 1.33 16 32 H 0.07 1.41 8.00 -2.39 -0.02 1.39 16 33 H 0.03 1.14 7.20 -2.38 -0.02 1.13 16 34 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 35 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.59 355.28 1.97 -74.62 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.22 Total: 19.11 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 5.65 Total: -17.09 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -6.63 Total: -127.48 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.85 Total: 3.39 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.45 kcal Total: -76.59 1.97 -74.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411527328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.843 kcal (2) G-P(sol) polarization free energy of solvation -76.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds