Wall clock time and date at job start Tue Mar 31 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47091 * 2 1 4 4 C 1.53002 * 109.47061 * 240.00253 * 2 1 3 5 5 C 1.50700 * 109.47617 * 175.00037 * 4 2 1 6 6 H 1.08008 * 119.99241 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00378 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00095 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46933 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47222 * 119.99840 * 9 7 5 12 12 H 1.48500 * 109.47162 * 240.00013 * 9 7 5 13 13 N 1.46900 * 109.47255 * 120.00332 * 2 1 3 14 14 C 1.46900 * 110.99841 * 274.23242 * 13 2 1 15 15 H 1.08995 * 109.46962 * 33.52596 * 14 13 2 16 16 C 1.53002 * 109.47045 * 153.53188 * 14 13 2 17 17 C 1.50703 * 109.46897 * 273.53159 * 14 13 2 18 18 N 1.31130 * 126.55115 * 134.98118 * 17 14 13 19 19 C 1.34493 * 105.61307 * 179.97438 * 18 17 14 20 20 C 1.50703 * 126.28206 * 180.26243 * 19 18 17 21 21 C 1.53004 * 109.47009 * 179.71361 * 20 19 18 22 22 C 1.52999 * 109.47360 * 299.70582 * 20 19 18 23 23 C 1.52994 * 109.47483 * 59.71088 * 20 19 18 24 24 N 1.29945 * 107.42771 * 359.97438 * 19 18 17 25 25 O 1.21301 * 110.24866 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.47202 * 175.72559 * 1 2 3 27 27 H 1.09002 * 109.47122 * 295.72012 * 1 2 3 28 28 H 1.08994 * 109.47079 * 55.72134 * 1 2 3 29 29 H 1.09007 * 109.46960 * 295.00176 * 4 2 1 30 30 H 1.08996 * 109.47161 * 54.99552 * 4 2 1 31 31 H 0.97001 * 120.00125 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00138 * 150.27927 * 13 2 1 33 33 H 1.08994 * 109.46925 * 55.27370 * 16 14 13 34 34 H 1.09000 * 109.46931 * 175.27102 * 16 14 13 35 35 H 1.09003 * 109.46838 * 295.27108 * 16 14 13 36 36 H 1.09001 * 109.47390 * 59.99100 * 21 20 19 37 37 H 1.08993 * 109.47670 * 179.97438 * 21 20 19 38 38 H 1.09009 * 109.46943 * 299.99945 * 21 20 19 39 39 H 1.08998 * 109.46730 * 60.00186 * 22 20 19 40 40 H 1.08997 * 109.47282 * 180.02562 * 22 20 19 41 41 H 1.09003 * 109.47498 * 300.00848 * 22 20 19 42 42 H 1.09003 * 109.47288 * 59.99727 * 23 20 19 43 43 H 1.08997 * 109.47374 * 179.97438 * 23 20 19 44 44 H 1.08998 * 109.46877 * 299.99979 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3579 8 7 3.5764 -1.8386 -3.2991 9 14 6.0920 -1.0611 -2.4370 10 1 6.5836 -0.2909 -1.2665 11 1 6.6863 -2.4219 -2.4185 12 1 6.4861 -0.3659 -3.6887 13 7 2.0197 -0.6926 1.1994 14 6 2.0997 0.2268 2.3423 15 1 1.2979 0.9620 2.2741 16 6 1.9571 -0.5643 3.6441 17 6 3.4311 0.9328 2.3268 18 7 3.6383 2.2133 2.5191 19 6 4.9683 2.3843 2.4153 20 6 5.7144 3.6853 2.5631 21 6 7.2129 3.4378 2.3782 22 6 5.2268 4.6761 1.5041 23 6 5.4611 4.2630 3.9570 24 7 5.4924 1.2207 2.1702 25 8 4.6263 0.3732 2.1162 26 1 -0.3633 -1.0248 -0.0766 27 1 -0.3633 0.4460 0.9259 28 1 -0.3633 0.5788 -0.8491 29 1 1.7516 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 4.0608 -2.2453 -4.0345 32 1 2.9115 -1.1311 1.0249 33 1 2.7075 -1.3542 3.6733 34 1 2.1002 0.1043 4.4931 35 1 0.9620 -1.0063 3.6934 36 1 7.3933 3.0261 1.3851 37 1 7.7525 4.3787 2.4846 38 1 7.5604 2.7319 3.1326 39 1 4.1593 4.8525 1.6358 40 1 5.7667 5.6169 1.6107 41 1 5.4072 4.2645 0.5110 42 1 5.8085 3.5572 4.7115 43 1 6.0011 5.2038 4.0641 44 1 4.3936 4.4394 4.0887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411527331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:04 Heat of formation + Delta-G solvation = 38.752553 kcal Electronic energy + Delta-G solvation = -23404.731302 eV Core-core repulsion = 20166.463192 eV Total energy + Delta-G solvation = -3238.268111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.23919 -37.68193 -37.44971 -34.73005 -33.59526 -32.16317 -30.73633 -28.04887 -27.45913 -27.41727 -27.37628 -24.29155 -24.03655 -23.08285 -21.50053 -19.68582 -19.09613 -17.71691 -17.11895 -16.35801 -15.87049 -15.22534 -14.89339 -14.55200 -14.25767 -14.03843 -13.61309 -13.46950 -12.56088 -12.52928 -12.36189 -12.28782 -12.26214 -11.84165 -11.78132 -11.74936 -11.53073 -11.44547 -11.35954 -11.18116 -11.13236 -11.05108 -10.82360 -10.70633 -10.60477 -10.52431 -10.36231 -9.58926 -9.32826 -9.11642 -8.43265 -8.10360 -6.05619 -4.08951 1.50782 2.52384 3.12808 3.28626 3.36978 3.44660 3.71703 4.17439 4.43371 4.60729 4.75642 4.80356 4.96040 5.23344 5.28656 5.33439 5.40676 5.48080 5.54451 5.65517 5.69716 5.75115 5.76933 5.79859 5.85746 5.92971 5.95676 6.07991 6.08636 6.17819 6.18968 6.23023 6.26118 6.32225 6.45738 6.81875 6.83488 7.30976 7.57380 7.82719 7.92110 7.99577 8.31028 8.51406 8.96682 9.56699 11.04942 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.006893 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.055640 B = 4061.007688 C = 5428.136511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.032 0.968 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.049 0.951 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.662 5.662 14 C 0.176 3.824 15 H 0.114 0.886 16 C -0.137 4.137 17 C 0.162 3.838 18 N -0.484 5.484 19 C 0.171 3.829 20 C 0.026 3.974 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.135 4.135 24 N -0.380 5.380 25 O 0.087 5.913 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.366 0.634 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 9.203 14.027 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.050 0.950 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.067 0.933 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.710 3.290 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.297 5.297 14 C 0.062 3.938 15 H 0.131 0.869 16 C -0.195 4.195 17 C -0.060 4.060 18 N -0.218 5.218 19 C -0.103 4.103 20 C 0.024 3.976 21 C -0.197 4.197 22 C -0.196 4.196 23 C -0.193 4.193 24 N -0.086 5.086 25 O 0.028 5.972 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.189 0.811 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.129 9.125 13.981 16.696 hybrid contribution 1.816 0.439 -0.579 1.956 sum 1.945 9.564 13.401 16.579 Atomic orbital electron populations 1.21806 0.96019 1.01699 0.99797 1.21779 0.93813 0.96086 0.91117 0.94951 1.19301 0.95502 0.96286 0.90632 1.21134 0.92025 1.34584 1.08427 0.93310 1.24916 0.98081 0.95030 0.95628 1.69958 1.35395 1.35490 1.11919 0.86673 0.86250 0.78044 0.78068 1.19532 1.20755 1.21076 1.60877 1.35446 1.28575 1.04759 1.20620 0.84602 0.93482 0.95069 0.86855 1.21807 1.03936 0.99961 0.93846 1.30407 0.92819 0.88649 0.94172 1.71766 1.14152 1.14514 1.21382 1.25664 0.87962 0.95965 1.00682 1.18919 0.93967 0.87044 0.97636 1.21831 0.92886 1.01948 1.03075 1.21850 1.02139 0.97781 0.97844 1.21825 1.02803 1.00604 0.94030 1.74607 1.13889 0.99776 1.20340 1.85287 1.13520 1.34386 1.63970 0.92316 0.94141 0.93099 0.95261 0.95784 0.92962 0.81123 0.91644 0.92384 0.90058 0.91855 0.91498 0.92104 0.91444 0.91459 0.92253 0.92672 0.91456 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.42 37.16 0.35 -1.91 16 2 C 0.08 1.62 2.39 -67.71 -0.16 1.45 16 3 H 0.03 0.69 7.68 -51.93 -0.40 0.29 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.37 16 5 C -0.52 -14.39 8.11 -34.44 -0.28 -14.67 16 6 H 0.05 1.35 7.50 -52.48 -0.39 0.96 16 7 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 8 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 9 Si 0.88 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.66 -11.88 6.06 -100.95 -0.61 -12.50 16 14 C 0.18 2.66 2.93 -68.86 -0.20 2.46 16 15 H 0.11 1.63 7.16 -51.93 -0.37 1.25 16 16 C -0.14 -1.63 9.50 37.16 0.35 -1.28 16 17 C 0.16 2.84 6.97 -13.05 -0.09 2.75 16 18 N -0.48 -8.45 11.55 -9.87 -0.11 -8.56 16 19 C 0.17 2.94 6.40 -156.37 -1.00 1.94 16 20 C 0.03 0.35 0.99 -155.66 -0.15 0.20 16 21 C -0.14 -1.74 7.97 37.16 0.30 -1.45 16 22 C -0.14 -1.73 8.46 37.16 0.31 -1.41 16 23 C -0.13 -1.46 8.46 37.15 0.31 -1.15 16 24 N -0.38 -7.36 11.47 30.90 0.35 -7.01 16 25 O 0.09 1.69 10.89 18.10 0.20 1.88 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.58 7.46 -51.93 -0.39 0.19 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.37 7.39 6.60 -39.29 -0.26 7.13 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -30.55 360.74 -7.22 -37.77 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.71 Total: 2.41 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.49 Total: -10.93 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.37 Total: -53.68 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: 0.20 Total: 1.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.55 -7.22 -37.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411527331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.518 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds