Wall clock time and date at job start Tue Mar 31 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47091 * 2 1 4 4 C 1.53002 * 109.47061 * 240.00253 * 2 1 3 5 5 C 1.50700 * 109.47617 * 175.00037 * 4 2 1 6 6 H 1.08008 * 119.99241 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00378 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00095 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46933 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47222 * 119.99840 * 9 7 5 12 12 H 1.48500 * 109.47162 * 240.00013 * 9 7 5 13 13 N 1.46900 * 109.47255 * 120.00332 * 2 1 3 14 14 C 1.46900 * 110.99841 * 274.23242 * 13 2 1 15 15 H 1.08995 * 109.46962 * 33.52596 * 14 13 2 16 16 C 1.53002 * 109.47045 * 153.53188 * 14 13 2 17 17 C 1.50703 * 109.46897 * 273.53159 * 14 13 2 18 18 N 1.31130 * 126.55115 * 134.98118 * 17 14 13 19 19 C 1.34493 * 105.61307 * 179.97438 * 18 17 14 20 20 C 1.50703 * 126.28206 * 180.26243 * 19 18 17 21 21 C 1.53004 * 109.47009 * 179.71361 * 20 19 18 22 22 C 1.52999 * 109.47360 * 299.70582 * 20 19 18 23 23 C 1.52994 * 109.47483 * 59.71088 * 20 19 18 24 24 N 1.29945 * 107.42771 * 359.97438 * 19 18 17 25 25 O 1.21301 * 110.24866 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.47202 * 175.72559 * 1 2 3 27 27 H 1.09002 * 109.47122 * 295.72012 * 1 2 3 28 28 H 1.08994 * 109.47079 * 55.72134 * 1 2 3 29 29 H 1.09007 * 109.46960 * 295.00176 * 4 2 1 30 30 H 1.08996 * 109.47161 * 54.99552 * 4 2 1 31 31 H 0.97001 * 120.00125 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00138 * 150.27927 * 13 2 1 33 33 H 1.08994 * 109.46925 * 55.27370 * 16 14 13 34 34 H 1.09000 * 109.46931 * 175.27102 * 16 14 13 35 35 H 1.09003 * 109.46838 * 295.27108 * 16 14 13 36 36 H 1.09001 * 109.47390 * 59.99100 * 21 20 19 37 37 H 1.08993 * 109.47670 * 179.97438 * 21 20 19 38 38 H 1.09009 * 109.46943 * 299.99945 * 21 20 19 39 39 H 1.08998 * 109.46730 * 60.00186 * 22 20 19 40 40 H 1.08997 * 109.47282 * 180.02562 * 22 20 19 41 41 H 1.09003 * 109.47498 * 300.00848 * 22 20 19 42 42 H 1.09003 * 109.47288 * 59.99727 * 23 20 19 43 43 H 1.08997 * 109.47374 * 179.97438 * 23 20 19 44 44 H 1.08998 * 109.46877 * 299.99979 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3579 8 7 3.5764 -1.8386 -3.2991 9 14 6.0920 -1.0611 -2.4370 10 1 6.5836 -0.2909 -1.2665 11 1 6.6863 -2.4219 -2.4185 12 1 6.4861 -0.3659 -3.6887 13 7 2.0197 -0.6926 1.1994 14 6 2.0997 0.2268 2.3423 15 1 1.2979 0.9620 2.2741 16 6 1.9571 -0.5643 3.6441 17 6 3.4311 0.9328 2.3268 18 7 3.6383 2.2133 2.5191 19 6 4.9683 2.3843 2.4153 20 6 5.7144 3.6853 2.5631 21 6 7.2129 3.4378 2.3782 22 6 5.2268 4.6761 1.5041 23 6 5.4611 4.2630 3.9570 24 7 5.4924 1.2207 2.1702 25 8 4.6263 0.3732 2.1162 26 1 -0.3633 -1.0248 -0.0766 27 1 -0.3633 0.4460 0.9259 28 1 -0.3633 0.5788 -0.8491 29 1 1.7516 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 4.0608 -2.2453 -4.0345 32 1 2.9115 -1.1311 1.0249 33 1 2.7075 -1.3542 3.6733 34 1 2.1002 0.1043 4.4931 35 1 0.9620 -1.0063 3.6934 36 1 7.3933 3.0261 1.3851 37 1 7.7525 4.3787 2.4846 38 1 7.5604 2.7319 3.1326 39 1 4.1593 4.8525 1.6358 40 1 5.7667 5.6169 1.6107 41 1 5.4072 4.2645 0.5110 42 1 5.8085 3.5572 4.7115 43 1 6.0011 5.2038 4.0641 44 1 4.3936 4.4394 4.0887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411527331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:03 Heat of formation + Delta-G solvation = 18.076625 kcal Electronic energy + Delta-G solvation = -23405.627878 eV Core-core repulsion = 20166.463192 eV Total energy + Delta-G solvation = -3239.164686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.62067 -39.00671 -38.71311 -36.14952 -35.25443 -33.98429 -32.11746 -29.46575 -29.25763 -28.39703 -28.30575 -25.58615 -25.40541 -24.98757 -22.74866 -21.32643 -20.30111 -19.14044 -18.60393 -18.38181 -17.29867 -16.58521 -16.52761 -16.13197 -15.26443 -15.19522 -15.03378 -14.87213 -14.18166 -13.78270 -13.59989 -13.50464 -13.42203 -13.33706 -13.21074 -12.98032 -12.76135 -12.70235 -12.62954 -12.58957 -12.51335 -12.43087 -12.38738 -12.29681 -12.14417 -11.93147 -11.80526 -11.33428 -11.08989 -10.93330 -10.63903 -9.62966 -8.26909 -6.35171 0.12621 1.19323 1.26461 1.29838 1.41695 1.79930 2.31646 2.50274 2.94048 3.04436 3.27315 3.65054 3.81674 3.91629 4.08450 4.12319 4.22180 4.31415 4.53903 4.58628 4.59984 4.62570 4.66732 4.72155 4.80172 4.82581 4.83649 4.85318 4.95045 4.97526 5.05004 5.14345 5.18569 5.22786 5.27217 5.30297 5.34142 5.47074 5.47854 5.79127 6.11278 6.16706 6.33406 6.79224 7.13224 7.33432 8.84487 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.006893 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.055640 B = 4061.007688 C = 5428.136511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.091 3.909 3 H 0.017 0.983 4 C 0.027 3.973 5 C -0.527 4.527 6 H 0.042 0.958 7 C 0.017 3.983 8 N -0.921 5.921 9 Si 0.941 3.059 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.278 1.278 13 N -0.657 5.657 14 C 0.177 3.823 15 H 0.128 0.872 16 C -0.129 4.129 17 C 0.161 3.839 18 N -0.491 5.491 19 C 0.172 3.828 20 C 0.018 3.982 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.127 4.127 24 N -0.410 5.410 25 O 0.059 5.941 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.009 0.991 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.351 0.649 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 10.723 15.788 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.018 4.018 3 H 0.035 0.965 4 C -0.010 4.010 5 C -0.566 4.566 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.561 5.561 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.197 1.197 12 H -0.204 1.204 13 N -0.289 5.289 14 C 0.063 3.937 15 H 0.145 0.855 16 C -0.187 4.187 17 C -0.062 4.062 18 N -0.225 5.225 19 C -0.101 4.101 20 C 0.016 3.984 21 C -0.193 4.193 22 C -0.192 4.192 23 C -0.184 4.184 24 N -0.121 5.121 25 O 0.006 5.994 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.172 0.828 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.107 10.624 15.749 18.998 hybrid contribution 1.798 0.011 -1.114 2.115 sum 1.905 10.635 14.635 18.191 Atomic orbital electron populations 1.21723 0.93038 1.02129 1.01598 1.21565 0.96074 0.94328 0.89854 0.96536 1.19156 0.94193 0.95368 0.92329 1.21391 0.93458 1.33786 1.07925 0.94012 1.25625 1.02009 0.95007 0.95559 1.70045 1.36957 1.36500 1.12582 0.85758 0.81618 0.78221 0.77670 1.20470 1.19738 1.20353 1.60935 1.34415 1.28906 1.04663 1.20943 0.83813 0.93625 0.95277 0.85457 1.21798 1.04940 0.99702 0.92274 1.30929 0.93050 0.88902 0.93288 1.71791 1.14383 1.14402 1.21921 1.26521 0.88143 0.96837 0.98636 1.19290 0.94017 0.85512 0.99572 1.21819 0.92668 1.03451 1.01341 1.21845 1.02279 0.98912 0.96144 1.21792 1.02986 1.01779 0.91889 1.74601 1.14556 1.00620 1.22331 1.85244 1.14198 1.35020 1.64898 0.92338 0.91028 0.92849 0.97290 0.98260 0.92671 0.82797 0.92178 0.90734 0.88064 0.94349 0.88039 0.92680 0.92053 0.87931 0.94664 0.92972 0.88265 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.42 71.98 0.68 -3.38 16 2 C 0.09 3.64 2.39 44.92 0.11 3.75 16 3 H 0.02 0.71 7.68 -2.39 -0.02 0.69 16 4 C 0.03 1.38 4.57 29.85 0.14 1.52 16 5 C -0.53 -29.75 8.11 25.60 0.21 -29.54 16 6 H 0.04 2.38 7.50 -2.91 -0.02 2.36 16 7 C 0.02 0.99 5.46 84.65 0.46 1.45 16 8 N -0.92 -55.60 13.29 21.44 0.28 -55.32 16 9 Si 0.94 46.40 29.54 68.60 2.03 48.43 16 10 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.66 -23.33 6.06 -473.31 -2.87 -26.20 16 14 C 0.18 5.11 2.93 44.17 0.13 5.24 16 15 H 0.13 3.35 7.16 -2.39 -0.02 3.33 16 16 C -0.13 -2.79 9.50 71.98 0.68 -2.11 16 17 C 0.16 5.59 6.97 88.38 0.62 6.21 16 18 N -0.49 -16.88 11.55 -303.20 -3.50 -20.38 16 19 C 0.17 5.90 6.40 138.46 0.89 6.79 16 20 C 0.02 0.46 0.99 -52.93 -0.05 0.40 16 21 C -0.14 -3.18 7.97 71.98 0.57 -2.61 16 22 C -0.13 -3.13 8.46 71.98 0.61 -2.52 16 23 C -0.13 -2.42 8.46 71.98 0.61 -1.81 16 24 N -0.41 -16.18 11.47 -60.33 -0.69 -16.88 16 25 O 0.06 2.37 10.89 74.85 0.81 3.18 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.85 7.46 -2.39 -0.02 1.83 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.35 14.45 6.60 -89.69 -0.59 13.86 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -67.74 360.74 2.08 -65.66 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.37 Total: 18.12 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 5.65 Total: -16.61 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -6.78 Total: -118.78 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.81 Total: 3.18 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -67.74 2.08 -65.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411527331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.733 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds