Wall clock time and date at job start Tue Mar 31 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47444 * 2 1 4 4 C 1.53008 * 109.46946 * 120.00338 * 2 1 3 5 5 C 1.50697 * 109.46824 * 184.99946 * 4 2 1 6 6 H 1.07999 * 120.00158 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99725 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00166 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99780 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47304 * 60.00271 * 9 7 5 11 11 H 1.48507 * 109.46784 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47087 * 299.99727 * 9 7 5 13 13 N 1.46901 * 109.47183 * 239.99870 * 2 1 3 14 14 C 1.48717 * 111.01468 * 311.85844 * 13 2 1 15 15 C 1.54385 * 104.51980 * 158.96684 * 14 13 2 16 16 C 1.54259 * 105.14377 * 336.26602 * 15 14 13 17 17 H 1.08996 * 110.32552 * 118.84483 * 16 15 14 18 18 N 1.46500 * 110.32268 * 241.05311 * 16 15 14 19 19 C 1.34781 * 119.99900 * 273.54339 * 18 16 15 20 20 O 1.21582 * 119.99722 * 0.02562 * 19 18 16 21 21 N 1.34780 * 119.99945 * 179.97438 * 19 18 16 22 22 C 1.46496 * 120.00027 * 180.02562 * 21 19 18 23 23 C 1.52994 * 117.49892 * 223.74897 * 22 21 19 24 24 C 1.52998 * 117.49737 * 155.08987 * 22 21 19 25 25 C 1.48561 * 110.99862 * 67.36567 * 13 2 1 26 26 H 1.09000 * 109.47440 * 187.89177 * 1 2 3 27 27 H 1.09004 * 109.46915 * 307.89134 * 1 2 3 28 28 H 1.08995 * 109.47201 * 67.89151 * 1 2 3 29 29 H 1.09001 * 109.46394 * 304.99636 * 4 2 1 30 30 H 1.08995 * 109.47267 * 64.99751 * 4 2 1 31 31 H 0.97003 * 120.00282 * 180.02562 * 8 7 5 32 32 H 1.08996 * 110.39517 * 40.23812 * 14 13 2 33 33 H 1.09004 * 110.50783 * 277.74762 * 14 13 2 34 34 H 1.08998 * 110.32557 * 217.32286 * 15 14 13 35 35 H 1.09000 * 110.32281 * 95.20871 * 15 14 13 36 36 H 0.96999 * 120.00378 * 93.55084 * 18 16 15 37 37 H 0.97000 * 119.99833 * 0.02562 * 21 19 18 38 38 H 1.09006 * 115.54945 * 9.42012 * 22 21 19 39 39 H 1.08998 * 117.50133 * 0.02562 * 23 22 21 40 40 H 1.09006 * 117.50125 * 145.02279 * 23 22 21 41 41 H 1.09007 * 117.49905 * 214.97922 * 24 22 21 42 42 H 1.08993 * 117.50200 * 359.97438 * 24 22 21 43 43 H 1.08997 * 110.40962 * 82.17955 * 25 13 2 44 44 H 1.09007 * 110.50847 * 319.78776 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 3.5418 -0.6150 1.3127 6 1 4.0789 -0.0863 0.5392 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8371 3.2999 9 14 6.0919 -1.0604 2.4374 10 1 6.4843 0.3705 2.4967 11 1 6.5869 -1.7606 3.6498 12 1 6.6845 -1.6865 1.2282 13 7 2.0197 -0.6925 -1.1994 14 6 1.3241 -1.9938 -1.3853 15 6 1.5151 -2.3246 -2.8811 16 6 1.7591 -0.9645 -3.5667 17 1 2.7418 -0.9489 -4.0380 18 7 0.7137 -0.6999 -4.5584 19 6 0.8434 -1.1681 -5.8156 20 8 1.8277 -1.8105 -6.1265 21 7 -0.1185 -0.9251 -6.7278 22 6 0.0222 -1.4346 -8.0941 23 6 -0.3350 -0.4876 -9.2414 24 6 -1.2590 -1.6591 -8.8998 25 6 1.6939 0.0762 -2.4283 26 1 -0.3634 -1.0179 0.1411 27 1 -0.3633 0.6312 0.8110 28 1 -0.3633 0.3868 -0.9521 29 1 1.6053 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2056 31 1 4.0606 -2.2433 4.0358 32 1 0.2644 -1.8950 -1.1502 33 1 1.7819 -2.7637 -0.7642 34 1 0.6177 -2.7953 -3.2824 35 1 2.3775 -2.9773 -3.0173 36 1 -0.0717 -0.1876 -4.3104 37 1 -0.9040 -0.4129 -6.4797 38 1 0.8457 -2.1306 -8.2539 39 1 -0.6743 0.5147 -8.9797 40 1 0.2532 -0.5608 -10.1562 41 1 -1.2783 -2.5027 -9.5899 42 1 -2.2065 -1.4282 -8.4131 43 1 2.4299 0.8636 -2.5903 44 1 0.6925 0.5012 -2.3586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411530970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:48 Heat of formation + Delta-G solvation = 5.699384 kcal Electronic energy + Delta-G solvation = -22265.656564 eV Core-core repulsion = 19025.955160 eV Total energy + Delta-G solvation = -3239.701404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.34593 -38.91361 -37.37950 -35.04695 -33.42013 -32.59843 -31.49276 -28.83454 -27.46037 -27.29123 -23.43600 -22.77453 -22.72904 -21.81871 -21.11572 -20.42073 -18.77905 -18.51641 -16.91462 -16.15576 -16.02041 -15.47262 -15.05610 -14.90044 -14.56725 -14.38213 -14.02305 -13.63875 -13.18843 -13.04776 -12.57534 -12.06051 -11.93812 -11.81874 -11.78281 -11.72110 -11.50744 -11.33603 -10.98488 -10.85921 -10.84290 -10.62335 -10.41309 -10.37464 -10.17032 -9.94164 -9.25638 -9.18516 -9.00456 -8.80251 -8.24165 -7.66873 -5.86828 -3.84794 2.44886 2.98559 3.43736 3.47140 3.51541 3.63722 3.96473 4.42636 4.58455 4.59578 4.63552 4.70235 4.79935 5.07962 5.23729 5.30597 5.42024 5.48643 5.50887 5.55431 5.68403 5.71347 5.76411 5.81376 5.90337 5.95674 6.06176 6.18637 6.26682 6.31483 6.43726 6.51491 6.56898 6.68736 6.81046 6.95096 7.43439 7.52625 7.80965 7.85665 7.96300 8.13445 8.49250 8.58962 9.20734 9.77054 11.25123 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.003132 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.004714 B = 8938.940237 C = 9367.013257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 H 0.071 0.929 4 C 0.034 3.966 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.475 5.475 14 C 0.029 3.971 15 C -0.132 4.132 16 C 0.160 3.840 17 H 0.098 0.902 18 N -0.736 5.736 19 C 0.707 3.293 20 O -0.585 6.585 21 N -0.721 5.721 22 C 0.104 3.896 23 C -0.197 4.197 24 C -0.193 4.193 25 C 0.021 3.979 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.258 0.742 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.393 0.607 37 H 0.396 0.604 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 3.205 -20.645 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.033 4.033 3 H 0.089 0.911 4 C -0.004 4.004 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.198 5.198 14 C -0.099 4.099 15 C -0.171 4.171 16 C 0.054 3.946 17 H 0.116 0.884 18 N -0.391 5.391 19 C 0.407 3.593 20 O -0.463 6.463 21 N -0.375 5.375 22 C -0.003 4.003 23 C -0.236 4.236 24 C -0.232 4.232 25 C -0.108 4.108 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.227 0.773 37 H 0.229 0.771 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.879 2.445 -20.635 23.455 hybrid contribution -0.771 0.684 0.283 1.069 sum -11.650 3.129 -20.353 23.659 Atomic orbital electron populations 1.22534 0.99728 1.01706 1.00379 1.22066 0.90144 0.98658 0.92438 0.91118 1.19122 0.96390 0.95303 0.89550 1.21130 0.91772 1.33146 1.06978 0.92184 1.25002 0.98065 0.95824 0.95981 1.69951 1.35344 1.36902 1.12339 0.86685 0.86320 0.77985 0.77130 1.20516 1.21684 1.20270 1.65705 1.52092 1.01908 1.00144 1.23217 0.97331 0.94109 0.95199 1.22738 1.02100 0.96944 0.95316 1.21623 0.90963 0.94706 0.87258 0.88432 1.45355 1.25086 1.59237 1.09406 1.15878 0.82965 0.79914 0.80510 1.90933 1.30917 1.44821 1.79586 1.44495 1.23493 1.59652 1.09852 1.21402 0.99713 1.00465 0.78765 1.23464 1.03939 0.95764 1.00478 1.23409 0.95112 1.00904 1.03726 1.23397 0.99907 0.96517 0.90980 0.92442 0.92495 0.94055 0.96358 0.96381 0.93271 0.93632 0.89443 0.91717 0.90511 0.77349 0.77062 0.84339 0.88616 0.88013 0.87881 0.88590 0.89879 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 8.16 37.16 0.30 -2.67 16 2 C 0.08 1.48 2.29 -67.71 -0.15 1.33 16 3 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 4 C 0.03 0.84 4.47 -27.88 -0.12 0.72 16 5 C -0.49 -13.80 8.84 -34.44 -0.30 -14.11 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.48 -8.77 5.06 -221.88 -1.12 -9.90 16 14 C 0.03 0.50 5.55 -2.09 -0.01 0.49 16 15 C -0.13 -1.97 6.78 -25.35 -0.17 -2.14 16 16 C 0.16 2.23 3.36 -66.55 -0.22 2.01 16 17 H 0.10 1.55 7.65 -51.93 -0.40 1.16 16 18 N -0.74 -8.24 5.05 -57.32 -0.29 -8.53 16 19 C 0.71 9.01 8.56 -86.91 -0.74 8.27 16 20 O -0.59 -10.03 15.61 5.29 0.08 -9.95 16 21 N -0.72 -6.52 5.57 -58.68 -0.33 -6.84 16 22 C 0.10 0.89 6.43 -67.94 -0.44 0.45 16 23 C -0.20 -1.27 10.46 -26.70 -0.28 -1.54 16 24 C -0.19 -1.16 10.46 -26.70 -0.28 -1.44 16 25 C 0.02 0.30 6.05 -2.18 -0.01 0.29 16 26 H 0.06 0.94 6.40 -51.93 -0.33 0.60 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.56 6.12 -51.93 -0.32 0.24 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.48 7.15 -51.93 -0.37 0.11 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.05 0.72 5.38 -51.93 -0.28 0.44 16 33 H 0.09 1.70 7.68 -51.93 -0.40 1.30 16 34 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.39 3.27 8.36 -40.82 -0.34 2.93 16 37 H 0.40 2.42 8.84 -40.82 -0.36 2.06 16 38 H 0.14 1.43 7.40 -51.93 -0.38 1.05 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.56 5.59 -51.93 -0.29 0.27 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -33.00 350.09 -10.43 -43.44 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.23 Total: 2.86 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.54 Total: -6.99 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -1.00 Total: -51.90 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.00 -10.43 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.136 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds