Wall clock time and date at job start Tue Mar 31 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47444 * 2 1 4 4 C 1.53008 * 109.46946 * 120.00338 * 2 1 3 5 5 C 1.50697 * 109.46824 * 184.99946 * 4 2 1 6 6 H 1.07999 * 120.00158 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99725 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00166 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99780 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47304 * 60.00271 * 9 7 5 11 11 H 1.48507 * 109.46784 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47087 * 299.99727 * 9 7 5 13 13 N 1.46901 * 109.47183 * 239.99870 * 2 1 3 14 14 C 1.48717 * 111.01468 * 311.85844 * 13 2 1 15 15 C 1.54385 * 104.51980 * 158.96684 * 14 13 2 16 16 C 1.54259 * 105.14377 * 336.26602 * 15 14 13 17 17 H 1.08996 * 110.32552 * 118.84483 * 16 15 14 18 18 N 1.46500 * 110.32268 * 241.05311 * 16 15 14 19 19 C 1.34781 * 119.99900 * 273.54339 * 18 16 15 20 20 O 1.21582 * 119.99722 * 0.02562 * 19 18 16 21 21 N 1.34780 * 119.99945 * 179.97438 * 19 18 16 22 22 C 1.46496 * 120.00027 * 180.02562 * 21 19 18 23 23 C 1.52994 * 117.49892 * 223.74897 * 22 21 19 24 24 C 1.52998 * 117.49737 * 155.08987 * 22 21 19 25 25 C 1.48561 * 110.99862 * 67.36567 * 13 2 1 26 26 H 1.09000 * 109.47440 * 187.89177 * 1 2 3 27 27 H 1.09004 * 109.46915 * 307.89134 * 1 2 3 28 28 H 1.08995 * 109.47201 * 67.89151 * 1 2 3 29 29 H 1.09001 * 109.46394 * 304.99636 * 4 2 1 30 30 H 1.08995 * 109.47267 * 64.99751 * 4 2 1 31 31 H 0.97003 * 120.00282 * 180.02562 * 8 7 5 32 32 H 1.08996 * 110.39517 * 40.23812 * 14 13 2 33 33 H 1.09004 * 110.50783 * 277.74762 * 14 13 2 34 34 H 1.08998 * 110.32557 * 217.32286 * 15 14 13 35 35 H 1.09000 * 110.32281 * 95.20871 * 15 14 13 36 36 H 0.96999 * 120.00378 * 93.55084 * 18 16 15 37 37 H 0.97000 * 119.99833 * 0.02562 * 21 19 18 38 38 H 1.09006 * 115.54945 * 9.42012 * 22 21 19 39 39 H 1.08998 * 117.50133 * 0.02562 * 23 22 21 40 40 H 1.09006 * 117.50125 * 145.02279 * 23 22 21 41 41 H 1.09007 * 117.49905 * 214.97922 * 24 22 21 42 42 H 1.08993 * 117.50200 * 359.97438 * 24 22 21 43 43 H 1.08997 * 110.40962 * 82.17955 * 25 13 2 44 44 H 1.09007 * 110.50847 * 319.78776 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 3.5418 -0.6150 1.3127 6 1 4.0789 -0.0863 0.5392 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8371 3.2999 9 14 6.0919 -1.0604 2.4374 10 1 6.4843 0.3705 2.4967 11 1 6.5869 -1.7606 3.6498 12 1 6.6845 -1.6865 1.2282 13 7 2.0197 -0.6925 -1.1994 14 6 1.3241 -1.9938 -1.3853 15 6 1.5151 -2.3246 -2.8811 16 6 1.7591 -0.9645 -3.5667 17 1 2.7418 -0.9489 -4.0380 18 7 0.7137 -0.6999 -4.5584 19 6 0.8434 -1.1681 -5.8156 20 8 1.8277 -1.8105 -6.1265 21 7 -0.1185 -0.9251 -6.7278 22 6 0.0222 -1.4346 -8.0941 23 6 -0.3350 -0.4876 -9.2414 24 6 -1.2590 -1.6591 -8.8998 25 6 1.6939 0.0762 -2.4283 26 1 -0.3634 -1.0179 0.1411 27 1 -0.3633 0.6312 0.8110 28 1 -0.3633 0.3868 -0.9521 29 1 1.6053 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2056 31 1 4.0606 -2.2433 4.0358 32 1 0.2644 -1.8950 -1.1502 33 1 1.7819 -2.7637 -0.7642 34 1 0.6177 -2.7953 -3.2824 35 1 2.3775 -2.9773 -3.0173 36 1 -0.0717 -0.1876 -4.3104 37 1 -0.9040 -0.4129 -6.4797 38 1 0.8457 -2.1306 -8.2539 39 1 -0.6743 0.5147 -8.9797 40 1 0.2532 -0.5608 -10.1562 41 1 -1.2783 -2.5027 -9.5899 42 1 -2.2065 -1.4282 -8.4131 43 1 2.4299 0.8636 -2.5903 44 1 0.6925 0.5012 -2.3586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411530970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:48 Heat of formation + Delta-G solvation = -18.608179 kcal Electronic energy + Delta-G solvation = -22266.710619 eV Core-core repulsion = 19025.955160 eV Total energy + Delta-G solvation = -3240.755459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37313 -40.13669 -38.13405 -36.40675 -34.89459 -34.03268 -32.79315 -30.27272 -29.15997 -28.59775 -25.27457 -23.59767 -23.37942 -23.23126 -21.97173 -21.58671 -20.17215 -19.54405 -18.34520 -17.83149 -17.05150 -16.77363 -16.46807 -15.99573 -15.79656 -15.59225 -15.13164 -14.84669 -14.68969 -14.27483 -13.67078 -13.62892 -13.48486 -13.13366 -13.02557 -12.79981 -12.63477 -12.52382 -12.44368 -12.32297 -12.30586 -12.21816 -11.78400 -11.55521 -11.42061 -11.32201 -11.11791 -11.03701 -10.47269 -10.23915 -9.56793 -9.05627 -8.09380 -6.13865 1.41906 1.45093 1.52140 1.58091 2.05762 2.48075 3.04773 3.06536 3.24522 3.44590 3.59363 3.82956 3.85376 4.09667 4.10759 4.11560 4.19120 4.37216 4.45784 4.48550 4.59416 4.66429 4.79068 4.79957 4.85102 4.96385 5.01580 5.06574 5.12443 5.15756 5.24259 5.24722 5.33751 5.47479 5.51173 5.57536 5.71911 5.89658 5.98586 6.19210 6.30651 6.50383 7.00237 7.08048 7.51943 7.57174 9.02384 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.003132 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.004714 B = 8938.940237 C = 9367.013257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.068 0.932 4 C 0.038 3.962 5 C -0.501 4.501 6 H 0.057 0.943 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.507 5.507 14 C 0.035 3.965 15 C -0.123 4.123 16 C 0.171 3.829 17 H 0.075 0.925 18 N -0.721 5.721 19 C 0.703 3.297 20 O -0.635 6.635 21 N -0.704 5.704 22 C 0.070 3.930 23 C -0.186 4.186 24 C -0.173 4.173 25 C 0.031 3.969 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.076 0.924 29 H -0.006 1.006 30 H -0.008 1.008 31 H 0.258 0.742 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 4.683 -22.580 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 H 0.086 0.914 4 C 0.001 3.999 5 C -0.540 4.540 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.582 5.582 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.231 5.231 14 C -0.093 4.093 15 C -0.162 4.162 16 C 0.065 3.935 17 H 0.094 0.906 18 N -0.377 5.377 19 C 0.403 3.597 20 O -0.516 6.516 21 N -0.358 5.358 22 C -0.037 4.037 23 C -0.225 4.225 24 C -0.211 4.211 25 C -0.098 4.098 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.103 0.897 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.499 3.966 -22.597 26.126 hybrid contribution -0.312 0.209 0.831 0.912 sum -12.811 4.176 -21.765 25.598 Atomic orbital electron populations 1.22399 0.96586 1.01852 1.02502 1.21738 0.92620 0.97423 0.90636 0.91351 1.18986 0.95042 0.94218 0.91673 1.21496 0.93488 1.32436 1.06558 0.92458 1.25843 1.02786 0.95701 0.95825 1.70077 1.37098 1.38016 1.13024 0.85661 0.80773 0.78443 0.77082 1.19321 1.21311 1.20017 1.65520 1.53444 1.02940 1.01217 1.23103 0.97705 0.92730 0.95760 1.22635 1.02034 0.97432 0.94097 1.21259 0.90889 0.93953 0.87412 0.90640 1.45015 1.25042 1.59168 1.08470 1.16056 0.82952 0.79564 0.81088 1.90907 1.33150 1.47082 1.80468 1.44292 1.23054 1.59035 1.09417 1.21438 1.01049 1.02086 0.79093 1.23526 1.03488 0.96172 0.99279 1.23488 0.94408 1.00874 1.02323 1.23344 1.01544 0.96009 0.88854 0.92881 0.92105 0.90551 0.98793 0.98953 0.93301 0.91908 0.93046 0.90230 0.92296 0.75146 0.75030 0.86917 0.87602 0.87503 0.87069 0.87125 0.89713 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 8.16 71.98 0.59 -4.64 16 2 C 0.08 3.27 2.29 44.92 0.10 3.38 16 3 H 0.07 2.67 8.11 -2.39 -0.02 2.65 16 4 C 0.04 1.97 4.47 29.85 0.13 2.10 16 5 C -0.50 -28.72 8.84 25.60 0.23 -28.49 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 9 Si 0.95 46.28 29.54 68.60 2.03 48.31 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 13 N -0.51 -18.45 5.06 -855.88 -4.33 -22.78 16 14 C 0.03 1.18 5.55 86.42 0.48 1.66 16 15 C -0.12 -3.61 6.78 31.49 0.21 -3.39 16 16 C 0.17 4.58 3.36 45.89 0.15 4.73 16 17 H 0.08 2.41 7.65 -2.39 -0.02 2.39 16 18 N -0.72 -14.47 5.05 -453.54 -2.29 -16.76 16 19 C 0.70 17.01 8.56 179.05 1.53 18.54 16 20 O -0.64 -21.93 15.61 -3.97 -0.06 -21.99 16 21 N -0.70 -11.26 5.57 -457.83 -2.55 -13.81 16 22 C 0.07 1.10 6.43 44.99 0.29 1.39 16 23 C -0.19 -1.92 10.46 30.62 0.32 -1.60 16 24 C -0.17 -1.61 10.46 30.62 0.32 -1.29 16 25 C 0.03 0.83 6.05 86.45 0.52 1.35 16 26 H 0.05 1.64 6.40 -2.39 -0.02 1.62 16 27 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.08 1.75 6.12 -2.39 -0.01 1.74 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H -0.01 -0.44 7.15 -2.39 -0.02 -0.46 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.06 1.90 5.38 -2.39 -0.01 1.88 16 33 H 0.05 2.09 7.68 -2.38 -0.02 2.07 16 34 H 0.08 2.10 7.95 -2.39 -0.02 2.08 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.41 5.27 8.36 -92.71 -0.77 4.50 16 37 H 0.41 3.69 8.84 -92.71 -0.82 2.87 16 38 H 0.11 2.38 7.40 -2.38 -0.02 2.37 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.07 1.54 5.59 -2.38 -0.01 1.52 16 Total: -1.00 -74.19 350.09 -2.16 -76.35 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -0.59 Total: 14.81 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.34 Total: -6.13 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -8.88 Total: -111.35 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -74.19 -2.16 -76.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.744 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds