Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47054 * 2 1 4 4 C 1.53006 * 109.47140 * 119.99646 * 2 1 3 5 5 C 1.50702 * 109.46940 * 183.30618 * 4 2 1 6 6 H 1.07995 * 120.00116 * 5.08197 * 5 4 2 7 7 C 1.37876 * 119.99751 * 185.07733 * 5 4 2 8 8 N 1.31507 * 120.00000 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99828 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47078 * 90.00193 * 9 7 5 11 11 H 1.48508 * 109.47052 * 209.99577 * 9 7 5 12 12 H 1.48489 * 109.47269 * 329.99920 * 9 7 5 13 13 N 1.46894 * 109.47527 * 239.99898 * 2 1 3 14 14 C 1.48563 * 110.99811 * 67.24674 * 13 2 1 15 15 C 1.54381 * 104.59462 * 200.96037 * 14 13 2 16 16 C 1.54263 * 105.05921 * 23.85640 * 15 14 13 17 17 H 1.09003 * 110.32279 * 240.99787 * 16 15 14 18 18 N 1.46505 * 110.32278 * 118.89710 * 16 15 14 19 19 C 1.34769 * 120.00469 * 86.44917 * 18 16 15 20 20 O 1.21591 * 119.99488 * 0.02562 * 19 18 16 21 21 N 1.34773 * 120.00278 * 179.97438 * 19 18 16 22 22 C 1.46502 * 120.00140 * 180.02562 * 21 19 18 23 23 C 1.53000 * 117.50025 * 154.99980 * 22 21 19 24 24 C 1.52994 * 117.49980 * 223.62569 * 22 21 19 25 25 C 1.48560 * 110.99792 * 311.83305 * 13 2 1 26 26 H 1.09006 * 109.47244 * 67.81745 * 1 2 3 27 27 H 1.09003 * 109.47164 * 187.81051 * 1 2 3 28 28 H 1.09002 * 109.47260 * 307.81079 * 1 2 3 29 29 H 1.08999 * 109.46812 * 303.30872 * 4 2 1 30 30 H 1.09000 * 109.46775 * 63.30883 * 4 2 1 31 31 H 0.96996 * 120.00294 * 180.02562 * 8 7 5 32 32 H 1.09004 * 110.41065 * 82.18479 * 14 13 2 33 33 H 1.08994 * 110.41402 * 319.74562 * 14 13 2 34 34 H 1.09005 * 110.32735 * 264.96040 * 15 14 13 35 35 H 1.09006 * 110.32049 * 142.75117 * 15 14 13 36 36 H 0.97000 * 119.99567 * 266.45486 * 18 16 15 37 37 H 0.97000 * 119.99758 * 0.02562 * 21 19 18 38 38 H 1.09007 * 115.55972 * 9.31455 * 22 21 19 39 39 H 1.08996 * 117.49412 * 0.02562 * 23 22 21 40 40 H 1.08990 * 117.50156 * 214.98119 * 23 22 21 41 41 H 1.09006 * 117.49743 * 145.02121 * 24 22 21 42 42 H 1.08998 * 117.50243 * 359.97438 * 24 22 21 43 43 H 1.09001 * 110.41462 * 40.25957 * 25 13 2 44 44 H 1.09001 * 110.41090 * 277.81420 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5448 -0.6506 1.2909 6 1 4.0790 -0.0733 0.5509 7 6 4.2395 -1.3230 2.2739 8 7 5.5526 -1.2610 2.3106 9 14 3.3155 -2.3220 3.5536 10 1 3.1470 -3.7149 3.0671 11 1 4.0843 -2.3311 4.8242 12 1 1.9809 -1.7143 3.7869 13 7 2.0197 -0.6925 -1.1993 14 6 1.6915 0.0748 -2.4284 15 6 1.7574 -0.9665 -3.5663 16 6 1.5163 -2.3265 -2.8794 17 1 2.3796 -2.9779 -3.0161 18 7 0.3106 -2.9616 -3.4173 19 6 0.3878 -3.7238 -4.5261 20 8 1.4584 -3.8848 -5.0797 21 7 -0.7212 -4.3084 -5.0206 22 6 -0.6372 -5.1375 -6.2255 23 6 -1.7074 -6.2137 -6.4187 24 6 -1.7239 -4.9538 -7.2866 25 6 1.3251 -1.9926 -1.3843 26 1 -0.3634 0.3880 -0.9516 27 1 -0.3634 -1.0182 0.1397 28 1 -0.3634 0.6300 0.8119 29 1 1.6290 -0.2427 2.1382 30 1 1.7259 -1.7645 1.2202 31 1 6.0414 -1.7343 3.0019 32 1 2.4260 0.8634 -2.5918 33 1 0.6891 0.4968 -2.3568 34 1 2.7397 -0.9496 -4.0385 35 1 0.9786 -0.7713 -4.3036 36 1 -0.5433 -2.8334 -2.9754 37 1 -1.5752 -4.1803 -4.5786 38 1 0.3715 -5.3629 -6.5719 39 1 -2.4742 -6.3045 -5.6495 40 1 -1.4029 -7.1470 -6.8921 41 1 -1.4302 -5.0583 -8.3312 42 1 -2.5017 -4.2164 -7.0881 43 1 0.2652 -1.8942 -1.1494 44 1 1.7838 -2.7606 -0.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411530974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = 10.144826 kcal Electronic energy + Delta-G solvation = -22437.717988 eV Core-core repulsion = 19198.209353 eV Total energy + Delta-G solvation = -3239.508635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33430 -38.97796 -37.37071 -35.05421 -33.45061 -32.58292 -31.66369 -28.51730 -28.19793 -27.52676 -23.38174 -22.79166 -22.73311 -21.49671 -21.17970 -20.22902 -19.06620 -18.37279 -16.99397 -16.56080 -16.06533 -15.64085 -14.93227 -14.85034 -14.59409 -14.33448 -13.77519 -13.68085 -13.32471 -13.04657 -12.68837 -12.32837 -12.04076 -12.02409 -11.91586 -11.87593 -11.49486 -11.30593 -11.20137 -10.97840 -10.83981 -10.73768 -10.41877 -10.18320 -10.12354 -9.75378 -9.56843 -9.20831 -9.05447 -8.78809 -8.41575 -7.72315 -5.89669 -3.83962 2.47660 3.01425 3.35550 3.43415 3.44806 3.66185 3.98512 4.44666 4.54452 4.61718 4.63081 4.65712 4.81006 5.04581 5.25583 5.30767 5.38611 5.43876 5.44951 5.57056 5.61591 5.64949 5.70338 5.72102 5.82188 5.85732 6.07164 6.19014 6.24480 6.29513 6.34438 6.40169 6.43960 6.58480 6.73485 6.83145 7.06665 7.26417 7.51096 7.73441 7.88989 7.93797 8.52373 8.72153 9.22580 9.72849 11.24498 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.003553 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.712136 B = 7878.199117 C = 8219.365268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.084 3.916 3 H 0.078 0.922 4 C -0.003 4.003 5 C -0.491 4.491 6 H 0.078 0.922 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.471 5.471 14 C 0.024 3.976 15 C -0.129 4.129 16 C 0.158 3.842 17 H 0.100 0.900 18 N -0.736 5.736 19 C 0.707 3.293 20 O -0.585 6.585 21 N -0.722 5.722 22 C 0.104 3.896 23 C -0.193 4.193 24 C -0.198 4.198 25 C 0.025 3.975 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.016 0.984 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.392 0.608 37 H 0.396 0.604 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 -4.805 -15.225 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.024 4.024 3 H 0.096 0.904 4 C -0.040 4.040 5 C -0.529 4.529 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.547 5.547 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.195 5.195 14 C -0.104 4.104 15 C -0.169 4.169 16 C 0.053 3.947 17 H 0.118 0.882 18 N -0.391 5.391 19 C 0.407 3.593 20 O -0.462 6.462 21 N -0.375 5.375 22 C -0.003 4.003 23 C -0.232 4.232 24 C -0.237 4.237 25 C -0.104 4.104 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.229 0.771 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.476 -5.050 -15.513 23.186 hybrid contribution -2.252 -0.380 1.120 2.544 sum -18.728 -5.429 -14.393 24.236 Atomic orbital electron populations 1.22581 0.99680 1.01515 1.00996 1.21833 0.89968 0.98840 0.91775 0.90396 1.19614 0.98111 0.94827 0.91476 1.21022 0.89051 1.30232 1.12622 0.90343 1.25006 0.94654 0.96580 0.97528 1.69905 1.06103 1.44037 1.34632 0.86902 0.80266 0.81053 0.81679 1.20574 1.21642 1.19427 1.65655 1.51539 1.01416 1.00844 1.23207 0.99351 0.97018 0.90842 1.22698 1.02516 0.94246 0.97408 1.21662 0.86721 0.93909 0.92439 0.88215 1.45346 1.11953 1.53165 1.28586 1.15876 0.84014 0.78558 0.80825 1.90937 1.27364 1.66352 1.61540 1.44494 1.09814 1.53562 1.29639 1.21401 0.96923 0.95263 0.86717 1.23399 1.02299 0.94234 1.03221 1.23453 1.02629 1.00122 0.97468 1.23404 0.97786 0.95166 0.93997 0.93413 0.92667 0.92372 0.96585 0.97066 0.93045 0.90267 0.94273 0.90415 0.91671 0.77382 0.77077 0.84317 0.88591 0.87872 0.88024 0.88659 0.93237 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 8.16 37.16 0.30 -2.50 16 2 C 0.08 1.59 2.31 -67.71 -0.16 1.44 16 3 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 4 C 0.00 -0.06 3.52 -27.88 -0.10 -0.16 16 5 C -0.49 -13.85 9.35 -34.44 -0.32 -14.17 16 6 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 9 Si 0.87 21.84 27.37 -169.99 -4.65 17.18 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.42 6.69 56.52 0.38 -6.04 16 13 N -0.47 -8.61 5.02 -222.02 -1.11 -9.72 16 14 C 0.02 0.36 6.34 -2.18 -0.01 0.35 16 15 C -0.13 -1.83 6.78 -25.35 -0.17 -2.00 16 16 C 0.16 2.31 3.36 -66.54 -0.22 2.08 16 17 H 0.10 1.71 7.64 -51.93 -0.40 1.31 16 18 N -0.74 -8.63 5.05 -57.32 -0.29 -8.92 16 19 C 0.71 9.34 8.56 -86.93 -0.74 8.59 16 20 O -0.58 -10.28 15.61 5.29 0.08 -10.20 16 21 N -0.72 -6.81 5.57 -58.68 -0.33 -7.14 16 22 C 0.10 0.93 6.43 -67.93 -0.44 0.49 16 23 C -0.19 -1.23 10.46 -26.73 -0.28 -1.51 16 24 C -0.20 -1.31 10.46 -26.73 -0.28 -1.59 16 25 C 0.03 0.40 5.24 -2.18 -0.01 0.39 16 26 H 0.05 0.62 6.11 -51.93 -0.32 0.30 16 27 H 0.05 0.79 6.40 -51.93 -0.33 0.45 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.02 0.37 7.55 -51.93 -0.39 -0.02 16 30 H 0.01 0.26 6.35 -51.93 -0.33 -0.07 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.53 5.98 -51.93 -0.31 0.22 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.85 7.95 -51.93 -0.41 0.43 16 36 H 0.39 3.46 8.36 -40.82 -0.34 3.12 16 37 H 0.40 2.57 8.84 -40.82 -0.36 2.21 16 38 H 0.14 1.48 7.40 -51.92 -0.38 1.10 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.68 4.97 -51.93 -0.26 0.42 16 44 H 0.09 1.66 7.71 -51.93 -0.40 1.26 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -33.74 346.58 -10.03 -43.77 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.19 Total: 4.32 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.53 Total: -6.88 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.96 Total: -53.42 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.65 Total: 17.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.74 -10.03 -43.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.912 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds