Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47054 * 2 1 4 4 C 1.53006 * 109.47140 * 119.99646 * 2 1 3 5 5 C 1.50702 * 109.46940 * 183.30618 * 4 2 1 6 6 H 1.07995 * 120.00116 * 5.08197 * 5 4 2 7 7 C 1.37876 * 119.99751 * 185.07733 * 5 4 2 8 8 N 1.31507 * 120.00000 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99828 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47078 * 90.00193 * 9 7 5 11 11 H 1.48508 * 109.47052 * 209.99577 * 9 7 5 12 12 H 1.48489 * 109.47269 * 329.99920 * 9 7 5 13 13 N 1.46894 * 109.47527 * 239.99898 * 2 1 3 14 14 C 1.48563 * 110.99811 * 67.24674 * 13 2 1 15 15 C 1.54381 * 104.59462 * 200.96037 * 14 13 2 16 16 C 1.54263 * 105.05921 * 23.85640 * 15 14 13 17 17 H 1.09003 * 110.32279 * 240.99787 * 16 15 14 18 18 N 1.46505 * 110.32278 * 118.89710 * 16 15 14 19 19 C 1.34769 * 120.00469 * 86.44917 * 18 16 15 20 20 O 1.21591 * 119.99488 * 0.02562 * 19 18 16 21 21 N 1.34773 * 120.00278 * 179.97438 * 19 18 16 22 22 C 1.46502 * 120.00140 * 180.02562 * 21 19 18 23 23 C 1.53000 * 117.50025 * 154.99980 * 22 21 19 24 24 C 1.52994 * 117.49980 * 223.62569 * 22 21 19 25 25 C 1.48560 * 110.99792 * 311.83305 * 13 2 1 26 26 H 1.09006 * 109.47244 * 67.81745 * 1 2 3 27 27 H 1.09003 * 109.47164 * 187.81051 * 1 2 3 28 28 H 1.09002 * 109.47260 * 307.81079 * 1 2 3 29 29 H 1.08999 * 109.46812 * 303.30872 * 4 2 1 30 30 H 1.09000 * 109.46775 * 63.30883 * 4 2 1 31 31 H 0.96996 * 120.00294 * 180.02562 * 8 7 5 32 32 H 1.09004 * 110.41065 * 82.18479 * 14 13 2 33 33 H 1.08994 * 110.41402 * 319.74562 * 14 13 2 34 34 H 1.09005 * 110.32735 * 264.96040 * 15 14 13 35 35 H 1.09006 * 110.32049 * 142.75117 * 15 14 13 36 36 H 0.97000 * 119.99567 * 266.45486 * 18 16 15 37 37 H 0.97000 * 119.99758 * 0.02562 * 21 19 18 38 38 H 1.09007 * 115.55972 * 9.31455 * 22 21 19 39 39 H 1.08996 * 117.49412 * 0.02562 * 23 22 21 40 40 H 1.08990 * 117.50156 * 214.98119 * 23 22 21 41 41 H 1.09006 * 117.49743 * 145.02121 * 24 22 21 42 42 H 1.08998 * 117.50243 * 359.97438 * 24 22 21 43 43 H 1.09001 * 110.41462 * 40.25957 * 25 13 2 44 44 H 1.09001 * 110.41090 * 277.81420 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5448 -0.6506 1.2909 6 1 4.0790 -0.0733 0.5509 7 6 4.2395 -1.3230 2.2739 8 7 5.5526 -1.2610 2.3106 9 14 3.3155 -2.3220 3.5536 10 1 3.1470 -3.7149 3.0671 11 1 4.0843 -2.3311 4.8242 12 1 1.9809 -1.7143 3.7869 13 7 2.0197 -0.6925 -1.1993 14 6 1.6915 0.0748 -2.4284 15 6 1.7574 -0.9665 -3.5663 16 6 1.5163 -2.3265 -2.8794 17 1 2.3796 -2.9779 -3.0161 18 7 0.3106 -2.9616 -3.4173 19 6 0.3878 -3.7238 -4.5261 20 8 1.4584 -3.8848 -5.0797 21 7 -0.7212 -4.3084 -5.0206 22 6 -0.6372 -5.1375 -6.2255 23 6 -1.7074 -6.2137 -6.4187 24 6 -1.7239 -4.9538 -7.2866 25 6 1.3251 -1.9926 -1.3843 26 1 -0.3634 0.3880 -0.9516 27 1 -0.3634 -1.0182 0.1397 28 1 -0.3634 0.6300 0.8119 29 1 1.6290 -0.2427 2.1382 30 1 1.7259 -1.7645 1.2202 31 1 6.0414 -1.7343 3.0019 32 1 2.4260 0.8634 -2.5918 33 1 0.6891 0.4968 -2.3568 34 1 2.7397 -0.9496 -4.0385 35 1 0.9786 -0.7713 -4.3036 36 1 -0.5433 -2.8334 -2.9754 37 1 -1.5752 -4.1803 -4.5786 38 1 0.3715 -5.3629 -6.5719 39 1 -2.4742 -6.3045 -5.6495 40 1 -1.4029 -7.1470 -6.8921 41 1 -1.4302 -5.0583 -8.3312 42 1 -2.5017 -4.2164 -7.0881 43 1 0.2652 -1.8942 -1.1494 44 1 1.7838 -2.7606 -0.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411530974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = -15.788068 kcal Electronic energy + Delta-G solvation = -22438.842523 eV Core-core repulsion = 19198.209353 eV Total energy + Delta-G solvation = -3240.633170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39763 -40.17283 -38.14501 -36.39962 -34.89377 -34.07581 -32.99978 -30.17340 -29.52403 -28.81009 -25.03781 -23.77154 -23.23569 -22.99821 -22.05456 -21.39880 -20.40529 -19.48148 -18.76076 -17.96657 -17.04718 -16.83104 -16.33863 -16.01008 -15.65370 -15.55639 -15.06175 -14.86781 -14.79694 -14.44603 -14.06238 -13.67275 -13.59623 -13.26910 -13.00610 -12.86143 -12.61691 -12.47469 -12.43033 -12.32678 -12.25966 -11.78839 -11.67364 -11.62262 -11.45839 -11.38076 -11.27655 -11.12108 -10.66058 -10.25835 -9.57775 -9.03268 -8.15827 -6.14880 1.37655 1.39322 1.50290 1.56651 2.04487 2.43117 3.04118 3.04824 3.19744 3.43646 3.58756 3.80271 3.84415 4.09258 4.09447 4.11416 4.15653 4.34199 4.42142 4.46265 4.59293 4.64757 4.77616 4.79203 4.86630 4.92981 5.02361 5.05677 5.07061 5.12003 5.17226 5.20693 5.23779 5.32993 5.48348 5.55416 5.57600 5.76984 5.97230 6.17331 6.33069 6.53178 6.93642 7.06966 7.45614 7.55926 9.02103 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.003553 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.712136 B = 7878.199117 C = 8219.365268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.062 0.938 4 C -0.001 4.001 5 C -0.490 4.490 6 H 0.032 0.968 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.243 1.243 13 N -0.513 5.513 14 C 0.032 3.968 15 C -0.121 4.121 16 C 0.168 3.832 17 H 0.065 0.935 18 N -0.721 5.721 19 C 0.703 3.297 20 O -0.636 6.636 21 N -0.703 5.703 22 C 0.069 3.931 23 C -0.174 4.174 24 C -0.184 4.184 25 C 0.033 3.967 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.726 -5.374 -15.351 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.022 4.022 3 H 0.080 0.920 4 C -0.039 4.039 5 C -0.528 4.528 6 H 0.050 0.950 7 C -0.201 4.201 8 N -0.604 5.604 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.166 1.166 13 N -0.237 5.237 14 C -0.096 4.096 15 C -0.160 4.160 16 C 0.061 3.939 17 H 0.083 0.917 18 N -0.377 5.377 19 C 0.403 3.597 20 O -0.517 6.517 21 N -0.358 5.358 22 C -0.038 4.038 23 C -0.212 4.212 24 C -0.222 4.222 25 C -0.096 4.096 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.248 0.752 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.033 -5.616 -15.647 26.810 hybrid contribution -0.797 -0.179 1.053 1.333 sum -21.831 -5.795 -14.594 26.891 Atomic orbital electron populations 1.22435 0.95692 1.02642 1.02841 1.21625 0.93059 0.97225 0.90253 0.91977 1.19570 0.94369 0.95803 0.94120 1.21314 0.91995 1.28616 1.10885 0.95010 1.25995 0.95481 0.98281 1.00366 1.70092 1.08293 1.45931 1.36059 0.85727 0.79755 0.79335 0.78146 1.19860 1.21718 1.16633 1.65494 1.53458 1.02863 1.01869 1.23171 1.00475 0.96558 0.89383 1.22611 1.02287 0.93693 0.97414 1.21274 0.86851 0.93624 0.92147 0.91693 1.44999 1.11816 1.52618 1.28233 1.16059 0.84178 0.78654 0.80817 1.90910 1.29605 1.68080 1.63058 1.44284 1.09424 1.52508 1.29543 1.21439 0.96826 0.97771 0.87728 1.23482 1.00635 0.94091 1.02979 1.23516 1.01096 1.00400 0.97211 1.23282 0.98981 0.93333 0.93964 0.90940 0.91594 0.91428 0.96003 0.96472 0.93136 0.91233 0.91540 0.92165 0.89721 0.75151 0.75009 0.87007 0.87129 0.87095 0.87442 0.87509 0.90077 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.54 8.16 71.98 0.59 -3.96 16 2 C 0.09 3.17 2.31 44.92 0.10 3.28 16 3 H 0.06 2.42 8.11 -2.38 -0.02 2.40 16 4 C 0.00 -0.05 3.52 29.85 0.11 0.06 16 5 C -0.49 -28.43 9.35 25.60 0.24 -28.19 16 6 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 7 C -0.01 -0.41 5.47 84.66 0.46 0.06 16 8 N -0.96 -62.60 13.96 21.45 0.30 -62.30 16 9 Si 0.95 45.14 27.37 68.60 1.88 47.02 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.24 -10.47 6.69 99.48 0.67 -9.81 16 13 N -0.51 -18.55 5.02 -856.33 -4.30 -22.84 16 14 C 0.03 0.91 6.34 86.45 0.55 1.46 16 15 C -0.12 -3.33 6.78 31.49 0.21 -3.12 16 16 C 0.17 4.85 3.36 45.89 0.15 5.00 16 17 H 0.06 2.35 7.64 -2.39 -0.02 2.33 16 18 N -0.72 -15.66 5.05 -453.52 -2.29 -17.94 16 19 C 0.70 18.01 8.56 179.06 1.53 19.55 16 20 O -0.64 -22.96 15.61 -4.00 -0.06 -23.02 16 21 N -0.70 -12.00 5.57 -457.82 -2.55 -14.55 16 22 C 0.07 1.15 6.43 44.99 0.29 1.44 16 23 C -0.17 -1.75 10.46 30.60 0.32 -1.43 16 24 C -0.18 -1.98 10.46 30.59 0.32 -1.66 16 25 C 0.03 1.01 5.24 86.45 0.45 1.46 16 26 H 0.07 1.52 6.11 -2.38 -0.01 1.50 16 27 H 0.07 1.56 6.40 -2.39 -0.02 1.54 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.02 0.97 7.55 -2.39 -0.02 0.95 16 30 H 0.02 0.76 6.35 -2.39 -0.02 0.74 16 31 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 1.55 5.98 -2.39 -0.01 1.54 16 34 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.08 2.01 7.95 -2.38 -0.02 1.99 16 36 H 0.41 5.84 8.36 -92.71 -0.77 5.07 16 37 H 0.41 4.07 8.84 -92.71 -0.82 3.25 16 38 H 0.11 2.48 7.40 -2.38 -0.02 2.47 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.94 4.97 -2.39 -0.01 1.93 16 44 H 0.06 2.29 7.71 -2.39 -0.02 2.27 16 Total: -1.00 -77.84 346.58 -2.32 -80.16 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.63 Total: 19.53 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.33 Total: -6.05 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -8.83 Total: -117.63 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -77.84 -2.32 -80.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.369 kcal (2) G-P(sol) polarization free energy of solvation -77.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds