Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46764 * 2 1 4 4 C 1.52995 * 109.47158 * 240.00172 * 2 1 3 5 5 C 1.50694 * 109.47303 * 175.00008 * 4 2 1 6 6 H 1.08001 * 119.99939 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00404 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00319 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46960 * 59.99913 * 9 7 5 11 11 H 1.48501 * 109.47063 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46847 * 300.00209 * 9 7 5 13 13 N 1.46903 * 109.47039 * 120.00048 * 2 1 3 14 14 C 1.48558 * 111.00049 * 50.52670 * 13 2 1 15 15 C 1.54381 * 104.59411 * 200.95992 * 14 13 2 16 16 C 1.54253 * 105.05950 * 23.85607 * 15 14 13 17 17 H 1.09005 * 110.32125 * 241.00256 * 16 15 14 18 18 N 1.46498 * 110.32872 * 118.90039 * 16 15 14 19 19 C 1.34774 * 120.00759 * 86.44671 * 18 16 15 20 20 O 1.21588 * 119.99263 * 0.02562 * 19 18 16 21 21 N 1.34765 * 120.00470 * 180.02562 * 19 18 16 22 22 C 1.46507 * 120.00280 * 179.97438 * 21 19 18 23 23 C 1.52998 * 117.49725 * 154.99397 * 22 21 19 24 24 C 1.52994 * 117.50064 * 223.62111 * 22 21 19 25 25 C 1.48563 * 110.99801 * 295.10849 * 13 2 1 26 26 H 1.09002 * 109.47547 * 172.73602 * 1 2 3 27 27 H 1.08998 * 109.47429 * 292.73298 * 1 2 3 28 28 H 1.09000 * 109.47178 * 52.73377 * 1 2 3 29 29 H 1.09010 * 109.46901 * 295.00028 * 4 2 1 30 30 H 1.09005 * 109.47323 * 54.99846 * 4 2 1 31 31 H 0.97002 * 120.00369 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.40796 * 82.18055 * 14 13 2 33 33 H 1.09004 * 110.51360 * 319.79038 * 14 13 2 34 34 H 1.09000 * 110.32187 * 264.95816 * 15 14 13 35 35 H 1.09000 * 110.32283 * 142.74822 * 15 14 13 36 36 H 0.97005 * 119.99722 * 266.45660 * 18 16 15 37 37 H 0.97005 * 120.00153 * 359.97438 * 21 19 18 38 38 H 1.09002 * 115.55645 * 9.30992 * 22 21 19 39 39 H 1.08993 * 117.50201 * 0.02562 * 23 22 21 40 40 H 1.09004 * 117.49829 * 214.97556 * 23 22 21 41 41 H 1.09000 * 117.49903 * 145.01870 * 24 22 21 42 42 H 1.09002 * 117.50049 * 359.97438 * 24 22 21 43 43 H 1.09003 * 110.41180 * 40.26658 * 25 13 2 44 44 H 1.09002 * 110.40957 * 277.81821 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2304 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2995 9 14 6.0920 -1.0610 -2.4368 10 1 6.6846 -1.6861 -1.2270 11 1 6.5870 -1.7611 -3.6493 12 1 6.4843 0.3700 -2.4972 13 7 2.0197 -0.6925 1.1995 14 6 1.3659 -2.0176 1.3534 15 6 1.5395 -2.3659 2.8473 16 6 1.7213 -1.0083 3.5568 17 1 2.6925 -0.9659 4.0499 18 7 0.6476 -0.7952 4.5305 19 6 0.7684 -1.2771 5.7833 20 8 1.7688 -1.8885 6.1056 21 7 -0.2195 -1.0814 6.6788 22 6 -0.0885 -1.6058 8.0405 23 6 -0.8830 -0.9075 9.1459 24 6 -1.3106 -2.2918 8.6541 25 6 1.6422 0.0461 2.4320 26 1 -0.3634 -1.0194 -0.1299 27 1 -0.3634 0.3971 0.9478 28 1 -0.3633 0.6223 -0.8178 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 4.0608 -2.2444 -4.0349 32 1 1.8620 -2.7610 0.7295 33 1 0.3080 -1.9535 1.0984 34 1 2.4222 -2.9891 2.9906 35 1 0.6514 -2.8736 3.2234 36 1 -0.1504 -0.3072 4.2734 37 1 -1.0175 -0.5934 6.4218 38 1 0.8937 -2.0013 8.2996 39 1 -1.5035 -0.0583 8.8601 40 1 -0.4236 -0.8438 10.1324 41 1 -1.1326 -3.1387 9.3168 42 1 -2.2124 -2.3526 8.0448 43 1 0.6276 0.4352 2.3464 44 1 2.3465 0.8564 2.6202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411530975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = 5.826785 kcal Electronic energy + Delta-G solvation = -22277.624495 eV Core-core repulsion = 19037.928616 eV Total energy + Delta-G solvation = -3239.695879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34755 -38.92556 -37.38298 -35.04569 -33.41914 -32.59822 -31.49735 -28.82843 -27.44507 -27.30708 -23.43846 -22.77169 -22.72243 -21.83327 -21.11464 -20.40976 -18.77909 -18.50446 -16.92904 -16.15792 -15.99478 -15.50990 -15.01794 -14.90952 -14.56374 -14.39485 -14.01653 -13.65288 -13.18611 -13.05313 -12.58575 -12.05961 -11.93433 -11.81896 -11.78323 -11.71289 -11.49761 -11.32519 -10.97741 -10.85930 -10.83612 -10.63118 -10.41644 -10.37499 -10.16657 -9.94016 -9.25362 -9.18008 -9.01045 -8.79829 -8.24464 -7.67144 -5.87199 -3.85242 2.45045 2.98674 3.43588 3.46964 3.51391 3.64042 3.96669 4.42693 4.58243 4.59987 4.63605 4.71004 4.80206 5.08349 5.23719 5.30318 5.42167 5.48403 5.50600 5.55592 5.68631 5.71688 5.77402 5.82205 5.90094 5.95787 6.06376 6.18806 6.26802 6.32175 6.43870 6.52203 6.58360 6.69654 6.81344 6.94506 7.43979 7.52807 7.80548 7.85799 7.95847 8.13169 8.49412 8.58493 9.20433 9.76704 11.24733 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032893 B = 0.003134 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.041249 B = 8932.509859 C = 9345.673119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.075 3.925 3 H 0.071 0.929 4 C 0.033 3.967 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.475 5.475 14 C 0.030 3.970 15 C -0.132 4.132 16 C 0.160 3.840 17 H 0.097 0.903 18 N -0.736 5.736 19 C 0.707 3.293 20 O -0.586 6.586 21 N -0.721 5.721 22 C 0.104 3.896 23 C -0.193 4.193 24 C -0.197 4.197 25 C 0.020 3.980 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.393 0.607 37 H 0.396 0.604 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.045 0.955 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 2.746 20.479 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.033 4.033 3 H 0.089 0.911 4 C -0.004 4.004 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.198 5.198 14 C -0.098 4.098 15 C -0.171 4.171 16 C 0.054 3.946 17 H 0.115 0.885 18 N -0.391 5.391 19 C 0.407 3.593 20 O -0.463 6.463 21 N -0.375 5.375 22 C -0.003 4.003 23 C -0.232 4.232 24 C -0.236 4.236 25 C -0.109 4.109 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.229 0.771 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.091 2.046 20.492 23.391 hybrid contribution -0.814 0.582 -0.326 1.053 sum -11.905 2.628 20.166 23.565 Atomic orbital electron populations 1.22543 0.99770 1.01685 1.00453 1.22062 0.90124 0.98724 0.92400 0.91068 1.19133 0.96408 0.95307 0.89587 1.21134 0.91760 1.33145 1.07031 0.92156 1.25003 0.98078 0.95813 0.95973 1.69952 1.35351 1.36880 1.12351 0.86683 0.86301 0.77995 0.77129 1.20261 1.21685 1.20512 1.65686 1.52482 1.01551 1.00109 1.23172 0.97670 0.93665 0.95283 1.22740 1.02224 0.96874 0.95259 1.21628 0.90296 0.94922 0.87706 0.88450 1.45356 1.22863 1.60581 1.10287 1.15873 0.83156 0.79705 0.80531 1.90934 1.30305 1.46191 1.78845 1.44494 1.21243 1.60930 1.10819 1.21402 0.97690 1.01006 0.80245 1.23401 1.04209 0.96176 0.99368 1.23456 0.99751 0.96247 1.04193 1.23417 0.99713 0.96699 0.91091 0.92489 0.93972 0.92470 0.96365 0.96346 0.93266 0.89391 0.93723 0.90500 0.91713 0.77356 0.77061 0.84333 0.88597 0.87886 0.88003 0.88613 0.93674 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 8.26 37.16 0.31 -2.68 16 2 C 0.08 1.48 2.31 -67.71 -0.16 1.33 16 3 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 4 C 0.03 0.82 4.44 -27.89 -0.12 0.70 16 5 C -0.49 -13.80 8.84 -34.44 -0.30 -14.11 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.47 -8.77 5.08 -222.02 -1.13 -9.90 16 14 C 0.03 0.51 5.48 -2.18 -0.01 0.50 16 15 C -0.13 -1.98 6.78 -25.35 -0.17 -2.15 16 16 C 0.16 2.23 3.36 -66.55 -0.22 2.01 16 17 H 0.10 1.55 7.64 -51.93 -0.40 1.15 16 18 N -0.74 -8.25 5.05 -57.33 -0.29 -8.54 16 19 C 0.71 9.02 8.56 -86.93 -0.74 8.27 16 20 O -0.59 -10.04 15.61 5.29 0.08 -9.96 16 21 N -0.72 -6.52 5.57 -58.68 -0.33 -6.85 16 22 C 0.10 0.89 6.43 -67.93 -0.44 0.45 16 23 C -0.19 -1.16 10.46 -26.73 -0.28 -1.44 16 24 C -0.20 -1.28 10.46 -26.73 -0.28 -1.56 16 25 C 0.02 0.29 6.06 -2.18 -0.01 0.27 16 26 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 27 H 0.04 0.57 5.99 -51.93 -0.31 0.26 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.02 0.48 7.03 -51.92 -0.37 0.12 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.09 1.73 7.63 -51.93 -0.40 1.33 16 33 H 0.04 0.71 5.43 -51.93 -0.28 0.43 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 36 H 0.39 3.28 8.36 -40.82 -0.34 2.93 16 37 H 0.40 2.43 8.84 -40.82 -0.36 2.06 16 38 H 0.14 1.43 7.40 -51.93 -0.38 1.05 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.57 5.43 -51.93 -0.28 0.29 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -32.96 349.72 -10.42 -43.38 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.21 Total: 2.99 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.54 Total: -7.03 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.01 Total: -51.89 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.96 -10.42 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.205 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds