Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46764 * 2 1 4 4 C 1.52995 * 109.47158 * 240.00172 * 2 1 3 5 5 C 1.50694 * 109.47303 * 175.00008 * 4 2 1 6 6 H 1.08001 * 119.99939 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00404 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00319 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46960 * 59.99913 * 9 7 5 11 11 H 1.48501 * 109.47063 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46847 * 300.00209 * 9 7 5 13 13 N 1.46903 * 109.47039 * 120.00048 * 2 1 3 14 14 C 1.48558 * 111.00049 * 50.52670 * 13 2 1 15 15 C 1.54381 * 104.59411 * 200.95992 * 14 13 2 16 16 C 1.54253 * 105.05950 * 23.85607 * 15 14 13 17 17 H 1.09005 * 110.32125 * 241.00256 * 16 15 14 18 18 N 1.46498 * 110.32872 * 118.90039 * 16 15 14 19 19 C 1.34774 * 120.00759 * 86.44671 * 18 16 15 20 20 O 1.21588 * 119.99263 * 0.02562 * 19 18 16 21 21 N 1.34765 * 120.00470 * 180.02562 * 19 18 16 22 22 C 1.46507 * 120.00280 * 179.97438 * 21 19 18 23 23 C 1.52998 * 117.49725 * 154.99397 * 22 21 19 24 24 C 1.52994 * 117.50064 * 223.62111 * 22 21 19 25 25 C 1.48563 * 110.99801 * 295.10849 * 13 2 1 26 26 H 1.09002 * 109.47547 * 172.73602 * 1 2 3 27 27 H 1.08998 * 109.47429 * 292.73298 * 1 2 3 28 28 H 1.09000 * 109.47178 * 52.73377 * 1 2 3 29 29 H 1.09010 * 109.46901 * 295.00028 * 4 2 1 30 30 H 1.09005 * 109.47323 * 54.99846 * 4 2 1 31 31 H 0.97002 * 120.00369 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.40796 * 82.18055 * 14 13 2 33 33 H 1.09004 * 110.51360 * 319.79038 * 14 13 2 34 34 H 1.09000 * 110.32187 * 264.95816 * 15 14 13 35 35 H 1.09000 * 110.32283 * 142.74822 * 15 14 13 36 36 H 0.97005 * 119.99722 * 266.45660 * 18 16 15 37 37 H 0.97005 * 120.00153 * 359.97438 * 21 19 18 38 38 H 1.09002 * 115.55645 * 9.30992 * 22 21 19 39 39 H 1.08993 * 117.50201 * 0.02562 * 23 22 21 40 40 H 1.09004 * 117.49829 * 214.97556 * 23 22 21 41 41 H 1.09000 * 117.49903 * 145.01870 * 24 22 21 42 42 H 1.09002 * 117.50049 * 359.97438 * 24 22 21 43 43 H 1.09003 * 110.41180 * 40.26658 * 25 13 2 44 44 H 1.09002 * 110.40957 * 277.81821 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2304 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2995 9 14 6.0920 -1.0610 -2.4368 10 1 6.6846 -1.6861 -1.2270 11 1 6.5870 -1.7611 -3.6493 12 1 6.4843 0.3700 -2.4972 13 7 2.0197 -0.6925 1.1995 14 6 1.3659 -2.0176 1.3534 15 6 1.5395 -2.3659 2.8473 16 6 1.7213 -1.0083 3.5568 17 1 2.6925 -0.9659 4.0499 18 7 0.6476 -0.7952 4.5305 19 6 0.7684 -1.2771 5.7833 20 8 1.7688 -1.8885 6.1056 21 7 -0.2195 -1.0814 6.6788 22 6 -0.0885 -1.6058 8.0405 23 6 -0.8830 -0.9075 9.1459 24 6 -1.3106 -2.2918 8.6541 25 6 1.6422 0.0461 2.4320 26 1 -0.3634 -1.0194 -0.1299 27 1 -0.3634 0.3971 0.9478 28 1 -0.3633 0.6223 -0.8178 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 4.0608 -2.2444 -4.0349 32 1 1.8620 -2.7610 0.7295 33 1 0.3080 -1.9535 1.0984 34 1 2.4222 -2.9891 2.9906 35 1 0.6514 -2.8736 3.2234 36 1 -0.1504 -0.3072 4.2734 37 1 -1.0175 -0.5934 6.4218 38 1 0.8937 -2.0013 8.2996 39 1 -1.5035 -0.0583 8.8601 40 1 -0.4236 -0.8438 10.1324 41 1 -1.1326 -3.1387 9.3168 42 1 -2.2124 -2.3526 8.0448 43 1 0.6276 0.4352 2.3464 44 1 2.3465 0.8564 2.6202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411530975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = -18.469340 kcal Electronic energy + Delta-G solvation = -22278.678054 eV Core-core repulsion = 19037.928616 eV Total energy + Delta-G solvation = -3240.749438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37791 -40.15073 -38.13799 -36.40626 -34.89284 -34.03481 -32.79688 -30.28521 -29.11531 -28.63231 -25.27229 -23.60097 -23.39382 -23.22748 -21.97118 -21.57734 -20.17044 -19.54000 -18.34617 -17.85027 -17.04097 -16.76843 -16.46784 -16.02603 -15.76975 -15.60224 -15.12949 -14.86748 -14.67528 -14.29320 -13.68436 -13.62661 -13.48174 -13.13706 -13.01182 -12.80221 -12.61854 -12.53422 -12.44005 -12.32668 -12.30688 -12.20661 -11.78923 -11.55508 -11.42346 -11.32234 -11.12387 -11.02710 -10.47391 -10.23862 -9.56649 -9.06149 -8.09601 -6.14136 1.41915 1.44923 1.52110 1.58176 2.05799 2.47951 3.04890 3.06817 3.24317 3.44846 3.59548 3.82763 3.85548 4.09878 4.10157 4.11753 4.18110 4.37595 4.46042 4.48537 4.59505 4.66356 4.79026 4.79893 4.84874 4.96755 5.01925 5.06521 5.12204 5.16222 5.24268 5.24351 5.34112 5.47459 5.51212 5.57521 5.72044 5.89625 5.98617 6.19139 6.30385 6.50134 7.00022 7.08089 7.51752 7.57231 9.02143 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032893 B = 0.003134 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.041249 B = 8932.509859 C = 9345.673119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H 0.068 0.932 4 C 0.037 3.963 5 C -0.502 4.502 6 H 0.057 0.943 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.506 5.506 14 C 0.036 3.964 15 C -0.123 4.123 16 C 0.171 3.829 17 H 0.076 0.924 18 N -0.721 5.721 19 C 0.703 3.297 20 O -0.635 6.635 21 N -0.704 5.704 22 C 0.070 3.930 23 C -0.171 4.171 24 C -0.187 4.187 25 C 0.030 3.970 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.060 0.940 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.258 0.742 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.290 4.156 22.400 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 H 0.087 0.913 4 C 0.000 4.000 5 C -0.540 4.540 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.230 5.230 14 C -0.092 4.092 15 C -0.162 4.162 16 C 0.065 3.935 17 H 0.094 0.906 18 N -0.377 5.377 19 C 0.403 3.597 20 O -0.516 6.516 21 N -0.358 5.358 22 C -0.037 4.037 23 C -0.210 4.210 24 C -0.226 4.226 25 C -0.099 4.099 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.248 0.752 37 H 0.250 0.750 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.755 3.496 22.439 26.046 hybrid contribution -0.344 0.126 -0.872 0.946 sum -13.098 3.622 21.567 25.492 Atomic orbital electron populations 1.22410 0.96614 1.01856 1.02559 1.21737 0.92611 0.97484 0.90603 0.91329 1.18996 0.95050 0.94255 0.91683 1.21497 0.93480 1.32432 1.06604 0.92452 1.25842 1.02786 0.95690 0.95817 1.70078 1.37099 1.37994 1.13036 0.85662 0.80771 0.78442 0.77089 1.19999 1.21306 1.19338 1.65507 1.53857 1.02482 1.01186 1.23050 0.97911 0.92384 0.95864 1.22637 1.02087 0.97462 0.94014 1.21266 0.90342 0.94097 0.87804 0.90597 1.45016 1.22819 1.60491 1.09374 1.16052 0.83177 0.79355 0.81073 1.90909 1.32526 1.48434 1.79748 1.44292 1.20837 1.60281 1.10386 1.21440 0.97710 1.03811 0.80689 1.23481 1.02663 0.96336 0.98495 1.23517 0.98567 0.96889 1.03633 1.23370 1.01348 0.96225 0.88915 0.92897 0.90455 0.92112 0.98874 0.98793 0.93295 0.93118 0.92094 0.92280 0.90274 0.75155 0.75030 0.86886 0.87084 0.87019 0.87539 0.87680 0.90794 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.26 8.26 71.98 0.59 -4.66 16 2 C 0.08 3.27 2.31 44.91 0.10 3.37 16 3 H 0.07 2.68 8.13 -2.39 -0.02 2.66 16 4 C 0.04 1.93 4.44 29.84 0.13 2.06 16 5 C -0.50 -28.72 8.84 25.60 0.23 -28.49 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 9 Si 0.95 46.26 29.54 68.60 2.03 48.29 16 10 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.51 -18.42 5.08 -856.33 -4.35 -22.77 16 14 C 0.04 1.23 5.48 86.45 0.47 1.70 16 15 C -0.12 -3.63 6.78 31.49 0.21 -3.42 16 16 C 0.17 4.58 3.36 45.88 0.15 4.73 16 17 H 0.08 2.41 7.64 -2.38 -0.02 2.39 16 18 N -0.72 -14.48 5.05 -453.56 -2.29 -16.77 16 19 C 0.70 17.02 8.56 179.06 1.53 18.55 16 20 O -0.64 -21.93 15.61 -3.99 -0.06 -21.99 16 21 N -0.70 -11.27 5.57 -457.83 -2.55 -13.82 16 22 C 0.07 1.11 6.43 44.99 0.29 1.40 16 23 C -0.17 -1.58 10.46 30.60 0.32 -1.26 16 24 C -0.19 -1.98 10.46 30.59 0.32 -1.66 16 25 C 0.03 0.79 6.06 86.45 0.52 1.32 16 26 H 0.05 1.63 6.35 -2.39 -0.02 1.61 16 27 H 0.08 1.77 5.99 -2.39 -0.01 1.75 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H -0.01 -0.40 7.03 -2.38 -0.02 -0.42 16 30 H -0.01 -0.35 8.14 -2.38 -0.02 -0.36 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.05 2.09 7.63 -2.39 -0.02 2.07 16 33 H 0.06 1.87 5.43 -2.39 -0.01 1.86 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.11 7.95 -2.39 -0.02 2.09 16 36 H 0.41 5.28 8.36 -92.70 -0.77 4.51 16 37 H 0.41 3.70 8.84 -92.70 -0.82 2.88 16 38 H 0.11 2.39 7.40 -2.39 -0.02 2.37 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.55 5.43 -2.39 -0.01 1.54 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -74.10 349.72 -2.18 -76.28 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.59 Total: 14.95 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.35 Total: -6.21 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -8.90 Total: -111.31 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.10 -2.18 -76.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.812 kcal (2) G-P(sol) polarization free energy of solvation -74.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds