Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47121 * 2 1 4 4 C 1.52998 * 109.46886 * 239.99878 * 2 1 3 5 5 C 1.50706 * 109.47310 * 174.99884 * 4 2 1 6 6 H 1.08007 * 119.99647 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00141 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00056 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99530 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47465 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46869 * 120.00267 * 9 7 5 12 12 H 1.48503 * 109.46672 * 239.99386 * 9 7 5 13 13 N 1.46900 * 109.47339 * 119.99772 * 2 1 3 14 14 C 1.47848 * 110.99983 * 57.06192 * 13 2 1 15 15 C 1.54901 * 104.79483 * 213.63604 * 14 13 2 16 16 C 1.55134 * 101.65465 * 37.06906 * 15 14 13 17 17 H 1.09000 * 110.70651 * 82.72758 * 16 15 14 18 18 N 1.46507 * 110.70658 * 205.96320 * 16 15 14 19 19 C 1.34776 * 120.00044 * 268.60116 * 18 16 15 20 20 O 1.21594 * 119.99856 * 359.97438 * 19 18 16 21 21 N 1.34774 * 120.00091 * 180.02562 * 19 18 16 22 22 C 1.46496 * 120.00010 * 179.97438 * 21 19 18 23 23 C 1.53005 * 117.49839 * 223.74626 * 22 21 19 24 24 C 1.53003 * 117.50081 * 155.08474 * 22 21 19 25 25 C 1.47436 * 111.00328 * 296.21805 * 13 2 1 26 26 H 1.08993 * 109.47438 * 52.51812 * 1 2 3 27 27 H 1.09001 * 109.47158 * 172.52105 * 1 2 3 28 28 H 1.09006 * 109.46828 * 292.51339 * 1 2 3 29 29 H 1.08998 * 109.47509 * 294.99762 * 4 2 1 30 30 H 1.09000 * 109.46978 * 55.00119 * 4 2 1 31 31 H 0.96998 * 119.99583 * 180.02562 * 8 7 5 32 32 H 1.08999 * 110.37084 * 332.46439 * 14 13 2 33 33 H 1.08999 * 110.37697 * 94.80268 * 14 13 2 34 34 H 1.08998 * 110.99149 * 278.97409 * 15 14 13 35 35 H 1.09006 * 111.02248 * 155.17709 * 15 14 13 36 36 H 0.97000 * 119.99844 * 88.59772 * 18 16 15 37 37 H 0.97000 * 119.99796 * 359.97438 * 21 19 18 38 38 H 1.08998 * 115.55371 * 9.41534 * 22 21 19 39 39 H 1.08997 * 117.49530 * 359.97438 * 23 22 21 40 40 H 1.08998 * 117.50219 * 145.02512 * 23 22 21 41 41 H 1.08994 * 117.50212 * 214.97861 * 24 22 21 42 42 H 1.09004 * 117.49341 * 359.97438 * 24 22 21 43 43 H 1.09002 * 109.88922 * 242.66322 * 25 13 2 44 44 H 1.09006 * 109.88669 * 3.68903 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0855 -0.5397 7 6 4.2303 -1.1927 -2.3584 8 7 3.5762 -1.8370 -3.3001 9 14 6.0919 -1.0602 -2.4375 10 1 6.5835 -0.2899 -1.2670 11 1 6.6861 -2.4210 -2.4201 12 1 6.4858 -0.3640 -3.6887 13 7 2.0197 -0.6924 1.1994 14 6 1.4888 -2.0705 1.2696 15 6 1.3075 -2.3480 2.7827 16 6 0.8292 -0.9658 3.2997 17 1 -0.2429 -0.8458 3.1436 18 7 1.1703 -0.7955 4.7143 19 6 0.2905 -1.1594 5.6682 20 8 -0.7865 -1.6286 5.3548 21 7 0.6041 -1.0022 6.9695 22 6 -0.3524 -1.3973 8.0064 23 6 -0.5522 -0.4415 9.1843 24 6 0.2074 -1.7554 9.3846 25 6 1.6226 0.0265 2.4238 26 1 -0.3634 0.6253 -0.8154 27 1 -0.3633 -1.0189 -0.1338 28 1 -0.3633 0.3935 0.9494 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1369 31 1 4.0606 -2.2438 -4.0355 32 1 0.5303 -2.1345 0.7545 33 1 2.2005 -2.7739 0.8373 34 1 2.2536 -2.6314 3.2438 35 1 0.5487 -3.1122 2.9519 36 1 2.0294 -0.4208 4.9643 37 1 1.4632 -0.6276 7.2195 38 1 -1.2221 -1.9534 7.6565 39 1 0.0284 0.4810 9.1880 40 1 -1.5532 -0.3692 9.6097 41 1 -0.2942 -2.5467 9.9414 42 1 1.2875 -1.6974 9.5196 43 1 2.5096 0.3661 2.9587 44 1 0.9959 0.8802 2.1658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411530976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = 2.676593 kcal Electronic energy + Delta-G solvation = -22277.003266 eV Core-core repulsion = 19037.170785 eV Total energy + Delta-G solvation = -3239.832482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34506 -38.97424 -37.38865 -35.00015 -33.41590 -32.59419 -31.47962 -28.87362 -27.55110 -27.18825 -23.31073 -22.76930 -22.65985 -21.71545 -21.12557 -20.66263 -18.73006 -18.65031 -16.95250 -16.17734 -15.80187 -15.56965 -15.21824 -14.95427 -14.44353 -14.34337 -13.84058 -13.62958 -13.16379 -13.01977 -12.59701 -12.06413 -12.01356 -11.94348 -11.71928 -11.65917 -11.40817 -11.28358 -11.06133 -10.86439 -10.83833 -10.70324 -10.49426 -10.33045 -10.26583 -9.95070 -9.25592 -9.13444 -8.99240 -8.78942 -8.26149 -7.51712 -5.88309 -3.86298 2.44502 2.96662 3.38145 3.45657 3.50835 3.63082 3.97987 4.42386 4.55846 4.59031 4.60918 4.63392 4.85866 5.06265 5.23836 5.25347 5.41337 5.48789 5.54330 5.62106 5.64603 5.68398 5.79813 5.87674 5.91294 6.01833 6.10571 6.15428 6.27047 6.33934 6.45816 6.52636 6.68313 6.73375 6.81682 6.97862 7.50408 7.64467 7.83326 7.85786 7.99515 8.12846 8.47386 8.58256 9.20125 9.75538 11.23702 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.003109 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.019204 B = 9002.653038 C = 9416.754467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.080 3.920 3 H 0.070 0.930 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.497 5.497 14 C 0.046 3.954 15 C -0.140 4.140 16 C 0.142 3.858 17 H 0.094 0.906 18 N -0.731 5.731 19 C 0.708 3.292 20 O -0.590 6.590 21 N -0.721 5.721 22 C 0.103 3.897 23 C -0.197 4.197 24 C -0.193 4.193 25 C 0.034 3.966 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.257 0.743 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.397 0.603 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 2.498 22.522 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.029 4.029 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.220 5.220 14 C -0.081 4.081 15 C -0.179 4.179 16 C 0.036 3.964 17 H 0.112 0.888 18 N -0.386 5.386 19 C 0.408 3.592 20 O -0.467 6.467 21 N -0.374 5.374 22 C -0.004 4.004 23 C -0.236 4.236 24 C -0.231 4.231 25 C -0.095 4.095 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.231 0.769 38 H 0.156 0.844 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.547 1.970 21.972 23.011 hybrid contribution 1.056 0.431 0.221 1.161 sum -5.492 2.400 22.193 22.988 Atomic orbital electron populations 1.22577 0.99629 1.01719 1.00601 1.22110 0.90100 0.98496 0.92153 0.91146 1.19183 0.96404 0.95410 0.89776 1.21214 0.91788 1.32897 1.06954 0.92081 1.25018 0.98033 0.95915 0.96013 1.69976 1.35112 1.36982 1.12364 0.86574 0.86442 0.77537 0.77636 1.19797 1.21349 1.21431 1.63818 1.56529 1.01295 1.00362 1.22997 0.99530 0.91696 0.93916 1.23135 1.01453 0.96635 0.96689 1.22205 1.00340 0.95930 0.77935 0.88818 1.45147 1.19449 1.68326 1.05636 1.15882 0.84123 0.78758 0.80448 1.90921 1.23387 1.51050 1.81370 1.44479 1.20040 1.68878 1.04003 1.21401 0.95218 1.01584 0.82182 1.23469 1.02384 0.94573 1.03218 1.23414 1.00705 0.99346 0.99652 1.23073 0.97971 0.96174 0.92259 0.92506 0.92549 0.93939 0.96227 0.96304 0.93378 0.92995 0.89525 0.90767 0.91041 0.76913 0.76945 0.84386 0.88587 0.88025 0.87881 0.88533 0.90971 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 8.52 37.16 0.32 -2.87 16 2 C 0.08 1.59 2.13 -67.71 -0.14 1.45 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.74 4.36 -27.88 -0.12 0.62 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.50 -9.14 4.89 -223.30 -1.09 -10.23 16 14 C 0.05 0.81 5.18 -2.30 -0.01 0.80 16 15 C -0.14 -2.05 6.76 -24.60 -0.17 -2.22 16 16 C 0.14 1.95 3.31 -66.11 -0.22 1.73 16 17 H 0.09 1.44 7.55 -51.93 -0.39 1.05 16 18 N -0.73 -8.26 5.18 -56.89 -0.29 -8.56 16 19 C 0.71 9.01 8.57 -86.92 -0.74 8.27 16 20 O -0.59 -10.00 15.56 5.28 0.08 -9.92 16 21 N -0.72 -6.55 5.57 -58.67 -0.33 -6.88 16 22 C 0.10 0.88 6.43 -67.93 -0.44 0.45 16 23 C -0.20 -1.26 10.46 -26.69 -0.28 -1.54 16 24 C -0.19 -1.17 10.46 -26.69 -0.28 -1.45 16 25 C 0.03 0.50 5.99 -2.84 -0.02 0.48 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.98 6.22 -51.93 -0.32 0.65 16 28 H 0.04 0.65 6.40 -51.93 -0.33 0.31 16 29 H 0.02 0.52 7.08 -51.93 -0.37 0.15 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.05 0.92 5.47 -51.93 -0.28 0.63 16 33 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 3.40 8.38 -40.82 -0.34 3.06 16 37 H 0.40 2.47 8.84 -40.82 -0.36 2.11 16 38 H 0.14 1.42 7.40 -51.93 -0.38 1.03 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.97 7.72 -51.93 -0.40 0.57 16 44 H 0.06 0.84 6.32 -51.93 -0.33 0.51 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -32.78 350.60 -10.42 -43.20 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.28 Total: 3.51 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.50 Total: -6.88 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.98 Total: -52.12 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.78 -10.42 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.879 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds