Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47121 * 2 1 4 4 C 1.52998 * 109.46886 * 239.99878 * 2 1 3 5 5 C 1.50706 * 109.47310 * 174.99884 * 4 2 1 6 6 H 1.08007 * 119.99647 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00141 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00056 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99530 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47465 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46869 * 120.00267 * 9 7 5 12 12 H 1.48503 * 109.46672 * 239.99386 * 9 7 5 13 13 N 1.46900 * 109.47339 * 119.99772 * 2 1 3 14 14 C 1.47848 * 110.99983 * 57.06192 * 13 2 1 15 15 C 1.54901 * 104.79483 * 213.63604 * 14 13 2 16 16 C 1.55134 * 101.65465 * 37.06906 * 15 14 13 17 17 H 1.09000 * 110.70651 * 82.72758 * 16 15 14 18 18 N 1.46507 * 110.70658 * 205.96320 * 16 15 14 19 19 C 1.34776 * 120.00044 * 268.60116 * 18 16 15 20 20 O 1.21594 * 119.99856 * 359.97438 * 19 18 16 21 21 N 1.34774 * 120.00091 * 180.02562 * 19 18 16 22 22 C 1.46496 * 120.00010 * 179.97438 * 21 19 18 23 23 C 1.53005 * 117.49839 * 223.74626 * 22 21 19 24 24 C 1.53003 * 117.50081 * 155.08474 * 22 21 19 25 25 C 1.47436 * 111.00328 * 296.21805 * 13 2 1 26 26 H 1.08993 * 109.47438 * 52.51812 * 1 2 3 27 27 H 1.09001 * 109.47158 * 172.52105 * 1 2 3 28 28 H 1.09006 * 109.46828 * 292.51339 * 1 2 3 29 29 H 1.08998 * 109.47509 * 294.99762 * 4 2 1 30 30 H 1.09000 * 109.46978 * 55.00119 * 4 2 1 31 31 H 0.96998 * 119.99583 * 180.02562 * 8 7 5 32 32 H 1.08999 * 110.37084 * 332.46439 * 14 13 2 33 33 H 1.08999 * 110.37697 * 94.80268 * 14 13 2 34 34 H 1.08998 * 110.99149 * 278.97409 * 15 14 13 35 35 H 1.09006 * 111.02248 * 155.17709 * 15 14 13 36 36 H 0.97000 * 119.99844 * 88.59772 * 18 16 15 37 37 H 0.97000 * 119.99796 * 359.97438 * 21 19 18 38 38 H 1.08998 * 115.55371 * 9.41534 * 22 21 19 39 39 H 1.08997 * 117.49530 * 359.97438 * 23 22 21 40 40 H 1.08998 * 117.50219 * 145.02512 * 23 22 21 41 41 H 1.08994 * 117.50212 * 214.97861 * 24 22 21 42 42 H 1.09004 * 117.49341 * 359.97438 * 24 22 21 43 43 H 1.09002 * 109.88922 * 242.66322 * 25 13 2 44 44 H 1.09006 * 109.88669 * 3.68903 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0855 -0.5397 7 6 4.2303 -1.1927 -2.3584 8 7 3.5762 -1.8370 -3.3001 9 14 6.0919 -1.0602 -2.4375 10 1 6.5835 -0.2899 -1.2670 11 1 6.6861 -2.4210 -2.4201 12 1 6.4858 -0.3640 -3.6887 13 7 2.0197 -0.6924 1.1994 14 6 1.4888 -2.0705 1.2696 15 6 1.3075 -2.3480 2.7827 16 6 0.8292 -0.9658 3.2997 17 1 -0.2429 -0.8458 3.1436 18 7 1.1703 -0.7955 4.7143 19 6 0.2905 -1.1594 5.6682 20 8 -0.7865 -1.6286 5.3548 21 7 0.6041 -1.0022 6.9695 22 6 -0.3524 -1.3973 8.0064 23 6 -0.5522 -0.4415 9.1843 24 6 0.2074 -1.7554 9.3846 25 6 1.6226 0.0265 2.4238 26 1 -0.3634 0.6253 -0.8154 27 1 -0.3633 -1.0189 -0.1338 28 1 -0.3633 0.3935 0.9494 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1369 31 1 4.0606 -2.2438 -4.0355 32 1 0.5303 -2.1345 0.7545 33 1 2.2005 -2.7739 0.8373 34 1 2.2536 -2.6314 3.2438 35 1 0.5487 -3.1122 2.9519 36 1 2.0294 -0.4208 4.9643 37 1 1.4632 -0.6276 7.2195 38 1 -1.2221 -1.9534 7.6565 39 1 0.0284 0.4810 9.1880 40 1 -1.5532 -0.3692 9.6097 41 1 -0.2942 -2.5467 9.9414 42 1 1.2875 -1.6974 9.5196 43 1 2.5096 0.3661 2.9587 44 1 0.9959 0.8802 2.1658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411530976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -21.128866 kcal Electronic energy + Delta-G solvation = -22278.035549 eV Core-core repulsion = 19037.170785 eV Total energy + Delta-G solvation = -3240.864764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37521 -40.21623 -38.13554 -36.36098 -34.89438 -33.99821 -32.81617 -30.33706 -29.04559 -28.76042 -25.15277 -23.57237 -23.25608 -23.23028 -21.99599 -21.77258 -20.24841 -19.61377 -18.33854 -17.82211 -17.06588 -16.68137 -16.43245 -16.22087 -15.79642 -15.33795 -15.19153 -14.91186 -14.53009 -14.29837 -13.65825 -13.59467 -13.47765 -13.29932 -13.04920 -12.78148 -12.62438 -12.57815 -12.42896 -12.35985 -12.29771 -12.18763 -11.79008 -11.71293 -11.44569 -11.33570 -11.10455 -11.00682 -10.47756 -10.21903 -9.56875 -8.95769 -8.08269 -6.13315 1.43057 1.44008 1.57109 1.58524 2.03993 2.49139 3.04483 3.08182 3.24492 3.32686 3.64590 3.80896 3.84894 4.07979 4.09610 4.11148 4.20936 4.37667 4.42678 4.45614 4.56172 4.68734 4.77588 4.79755 4.90268 4.94464 4.96978 5.04867 5.09114 5.16097 5.21706 5.24059 5.32284 5.48628 5.53584 5.57925 5.72922 5.91673 5.98453 6.27163 6.33553 6.50834 7.01316 7.06729 7.52809 7.55341 9.04066 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.003109 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.019204 B = 9002.653038 C = 9416.754467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 H 0.070 0.930 4 C 0.035 3.965 5 C -0.497 4.497 6 H 0.061 0.939 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.958 3.042 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.516 5.516 14 C 0.048 3.952 15 C -0.128 4.128 16 C 0.156 3.844 17 H 0.080 0.920 18 N -0.719 5.719 19 C 0.704 3.296 20 O -0.636 6.636 21 N -0.704 5.704 22 C 0.070 3.930 23 C -0.185 4.185 24 C -0.174 4.174 25 C 0.040 3.960 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.066 0.934 29 H -0.005 1.005 30 H -0.008 1.008 31 H 0.258 0.742 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.413 0.587 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 3.686 25.214 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.784 3.216 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.240 5.240 14 C -0.080 4.080 15 C -0.167 4.167 16 C 0.049 3.951 17 H 0.098 0.902 18 N -0.374 5.374 19 C 0.404 3.596 20 O -0.517 6.517 21 N -0.358 5.358 22 C -0.036 4.036 23 C -0.224 4.224 24 C -0.212 4.212 25 C -0.088 4.088 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.013 0.987 30 H 0.010 0.990 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.250 0.750 37 H 0.250 0.750 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.394 3.190 24.726 25.508 hybrid contribution 0.683 0.049 -0.571 0.891 sum -4.711 3.239 24.156 24.823 Atomic orbital electron populations 1.22448 0.97373 1.01623 1.02102 1.21801 0.91850 0.97544 0.90770 0.91171 1.19038 0.95384 0.94302 0.91515 1.21534 0.93146 1.32233 1.06643 0.92091 1.25891 1.02994 0.95714 0.95779 1.70110 1.37051 1.38132 1.13119 0.85493 0.80541 0.77575 0.77969 1.18612 1.21119 1.20964 1.63680 1.57320 1.01747 1.01204 1.22867 0.98244 0.91029 0.95820 1.23017 1.01793 0.97409 0.94486 1.21858 0.99339 0.94794 0.79153 0.90177 1.44870 1.20011 1.68130 1.04426 1.16048 0.83555 0.78479 0.81505 1.90895 1.25425 1.53167 1.82251 1.44302 1.20769 1.67982 1.02774 1.21447 0.95359 1.03875 0.82953 1.23531 1.03059 0.94958 1.00869 1.23493 1.01538 0.99318 0.96843 1.23079 0.99087 0.95969 0.90688 0.92105 0.93242 0.91504 0.98692 0.99010 0.93346 0.93563 0.92486 0.90075 0.91151 0.74975 0.75032 0.86811 0.87643 0.87419 0.87026 0.87211 0.89058 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.94 8.52 71.98 0.61 -5.33 16 2 C 0.09 3.55 2.13 44.91 0.10 3.65 16 3 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 4 C 0.03 1.81 4.36 29.85 0.13 1.94 16 5 C -0.50 -28.00 8.84 25.60 0.23 -27.78 16 6 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 7 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 8 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 10 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 N -0.52 -18.67 4.89 -860.39 -4.21 -22.88 16 14 C 0.05 1.72 5.18 86.77 0.45 2.17 16 15 C -0.13 -3.66 6.76 31.98 0.22 -3.44 16 16 C 0.16 4.02 3.31 46.17 0.15 4.18 16 17 H 0.08 2.37 7.55 -2.39 -0.02 2.35 16 18 N -0.72 -14.68 5.18 -452.18 -2.34 -17.02 16 19 C 0.70 16.96 8.57 179.06 1.53 18.50 16 20 O -0.64 -21.46 15.56 -4.01 -0.06 -21.52 16 21 N -0.70 -11.43 5.57 -457.81 -2.55 -13.98 16 22 C 0.07 1.11 6.43 44.99 0.29 1.40 16 23 C -0.19 -1.92 10.46 30.62 0.32 -1.60 16 24 C -0.17 -1.65 10.46 30.62 0.32 -1.33 16 25 C 0.04 1.08 5.99 86.65 0.52 1.60 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.72 6.22 -2.39 -0.01 1.71 16 28 H 0.07 1.92 6.40 -2.38 -0.02 1.90 16 29 H -0.01 -0.30 7.08 -2.39 -0.02 -0.31 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.05 1.69 5.47 -2.39 -0.01 1.67 16 33 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.41 5.78 8.38 -92.71 -0.78 5.00 16 37 H 0.41 3.94 8.84 -92.71 -0.82 3.12 16 38 H 0.11 2.37 7.40 -2.39 -0.02 2.35 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 2.15 7.72 -2.39 -0.02 2.13 16 44 H 0.07 1.74 6.32 -2.38 -0.02 1.73 16 Total: -1.00 -72.34 350.60 -2.12 -74.46 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.59 Total: 17.47 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.33 Total: -6.05 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -8.82 Total: -111.63 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.34 -2.12 -74.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411530976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.331 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds