Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47034 * 275.53684 * 3 2 1 5 5 H 1.48504 * 109.47121 * 35.53347 * 3 2 1 6 6 H 1.48494 * 109.47224 * 155.53262 * 3 2 1 7 7 C 1.37877 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00090 * 347.59693 * 7 2 1 9 9 C 1.50701 * 119.99951 * 167.60290 * 7 2 1 10 10 C 1.52999 * 115.54942 * 324.57519 * 9 7 2 11 11 N 1.46503 * 109.47265 * 305.03365 * 10 9 7 12 12 C 1.34778 * 120.00022 * 175.78372 * 11 10 9 13 13 O 1.21583 * 120.00032 * 5.48262 * 12 11 10 14 14 N 1.34776 * 119.99856 * 185.48099 * 12 11 10 15 15 C 1.46932 * 120.63097 * 5.30798 * 14 12 11 16 16 C 1.53189 * 108.77400 * 126.36986 * 15 14 12 17 17 C 1.53034 * 109.31231 * 54.63452 * 16 15 14 18 18 C 1.53045 * 109.54279 * 298.63365 * 17 16 15 19 19 C 1.46920 * 120.63135 * 185.28524 * 14 12 11 20 20 H 1.09000 * 109.58703 * 113.83923 * 19 14 12 21 21 C 1.53001 * 109.70415 * 353.49025 * 19 14 12 22 22 N 1.46904 * 109.47192 * 181.26458 * 21 19 14 23 23 C 1.52999 * 117.49961 * 110.24316 * 9 7 2 24 24 C 1.52995 * 117.49888 * 178.90845 * 9 7 2 25 25 H 0.97001 * 119.99701 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47460 * 185.02842 * 10 9 7 27 27 H 1.09008 * 109.47079 * 65.02960 * 10 9 7 28 28 H 0.96996 * 119.99760 * 355.77635 * 11 10 9 29 29 H 1.08997 * 109.58244 * 246.15965 * 15 14 12 30 30 H 1.09000 * 109.58305 * 6.43509 * 15 14 12 31 31 H 1.09006 * 109.49409 * 294.68129 * 16 15 14 32 32 H 1.09002 * 109.49653 * 174.58948 * 16 15 14 33 33 H 1.09004 * 109.46225 * 178.61554 * 17 16 15 34 34 H 1.09000 * 109.46274 * 58.65351 * 17 16 15 35 35 H 1.08995 * 109.50102 * 181.31899 * 18 17 16 36 36 H 1.09001 * 109.49270 * 301.41482 * 18 17 16 37 37 H 1.09005 * 109.47056 * 301.26360 * 21 19 14 38 38 H 1.09003 * 109.47292 * 61.25995 * 21 19 14 39 39 H 1.00904 * 110.99676 * 184.65834 * 22 21 19 40 40 H 1.00897 * 110.99718 * 308.60690 * 22 21 19 41 41 H 1.09000 * 117.50209 * 215.00072 * 23 9 7 42 42 H 1.09004 * 117.49910 * 0.02729 * 23 9 7 43 43 H 1.09002 * 117.49982 * 359.97175 * 24 9 7 44 44 H 1.09001 * 117.50411 * 144.97182 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3797 2.1139 -1.3935 5 1 1.5100 2.6161 0.8137 6 1 3.6003 1.4093 0.5798 7 6 2.0046 -1.1941 -0.0005 8 1 1.4835 -2.1185 0.1999 9 6 3.4852 -1.2092 -0.2807 10 6 3.9735 -0.1830 -1.3052 11 7 3.2220 -0.3427 -2.5526 12 6 3.4229 0.5128 -3.5745 13 8 4.2968 1.3548 -3.4997 14 7 2.6550 0.4349 -4.6794 15 6 1.5216 -0.4982 -4.7391 16 6 0.2612 0.2812 -5.1272 17 6 0.5179 1.0424 -6.4298 18 6 1.6588 2.0413 -6.2227 19 6 2.9350 1.2818 -5.8468 20 1 3.2489 0.6581 -6.6838 21 6 4.0440 2.2793 -5.5064 22 7 4.2989 3.1431 -6.6670 23 6 4.4208 -1.5470 0.8818 24 6 4.1978 -2.5625 -0.2418 25 1 -0.4850 0.8401 0.0004 26 1 5.0349 -0.3386 -1.4979 27 1 3.8188 0.8227 -0.9141 28 1 2.5801 -1.0642 -2.6431 29 1 1.7203 -1.2671 -5.4857 30 1 1.3800 -0.9639 -3.7638 31 1 0.0124 0.9881 -4.3356 32 1 -0.5669 -0.4134 -5.2688 33 1 -0.3854 1.5783 -6.7213 34 1 0.7908 0.3372 -7.2148 35 1 1.8255 2.5994 -7.1439 36 1 1.3968 2.7316 -5.4208 37 1 3.7348 2.8912 -4.6590 38 1 4.9543 1.7372 -5.2501 39 1 5.0783 3.7602 -6.4942 40 1 4.4500 2.5942 -7.5000 41 1 5.3842 -1.0383 0.9168 42 1 3.9653 -1.7588 1.8492 43 1 3.5957 -3.4419 -0.0130 44 1 5.0141 -2.7220 -0.9462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418127229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = 21.618488 kcal Electronic energy + Delta-G solvation = -23997.532887 eV Core-core repulsion = 20758.521787 eV Total energy + Delta-G solvation = -3239.011100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35486 -37.79559 -36.70178 -34.92150 -33.22397 -32.39601 -32.25766 -30.28480 -27.15289 -25.65212 -24.71795 -24.10429 -21.60305 -21.47065 -20.77159 -19.47255 -19.02598 -17.57335 -16.47950 -16.06323 -15.79387 -15.17622 -15.03476 -14.47956 -14.29881 -14.20581 -14.09202 -13.59234 -13.28165 -13.19210 -12.86177 -12.62599 -12.22678 -12.05344 -12.01605 -11.85320 -11.02816 -10.91463 -10.84026 -10.65711 -10.57121 -10.50098 -10.38072 -9.98881 -9.60403 -9.38022 -9.23462 -8.94069 -8.55845 -8.42799 -8.16413 -7.94956 -6.26437 -4.21293 3.01949 3.31715 3.38821 3.43164 3.70955 4.33135 4.33852 4.74490 4.86013 4.90738 4.95912 5.01890 5.18896 5.30989 5.37490 5.44508 5.57248 5.64866 5.75837 5.85955 5.89025 5.99871 6.01905 6.13267 6.15698 6.22258 6.24515 6.29693 6.40075 6.44764 6.48620 6.54060 6.65164 6.82800 6.93488 7.07995 7.17549 7.30368 7.43044 7.53315 7.62775 8.36866 8.54770 8.78632 9.14398 9.39223 10.84105 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.006585 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.010745 B = 4250.819616 C = 4642.423767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.088 3.912 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.490 4.490 8 H 0.079 0.921 9 C -0.008 4.008 10 C 0.159 3.841 11 N -0.718 5.718 12 C 0.704 3.296 13 O -0.601 6.601 14 N -0.629 5.629 15 C 0.111 3.889 16 C -0.135 4.135 17 C -0.119 4.119 18 C -0.121 4.121 19 C 0.168 3.832 20 H 0.060 0.940 21 C 0.071 3.929 22 N -0.858 5.858 23 C -0.200 4.200 24 C -0.187 4.187 25 H 0.266 0.734 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.405 0.595 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.341 0.659 40 H 0.329 0.671 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 0.342 -12.951 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.117 4.117 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.097 0.903 9 C -0.009 4.009 10 C 0.035 3.965 11 N -0.374 5.374 12 C 0.406 3.594 13 O -0.481 6.481 14 N -0.367 5.367 15 C -0.012 4.012 16 C -0.173 4.173 17 C -0.157 4.157 18 C -0.159 4.159 19 C 0.063 3.937 20 H 0.078 0.922 21 C -0.058 4.058 22 N -0.389 5.389 23 C -0.238 4.238 24 C -0.225 4.225 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.243 0.757 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.427 1.317 -12.697 13.217 hybrid contribution 0.946 0.033 0.103 0.952 sum 4.373 1.350 -12.594 13.400 Atomic orbital electron populations 1.69922 1.06326 1.27344 1.48306 1.24903 0.94477 0.98885 0.93413 0.87006 0.79301 0.83503 0.78527 1.19968 1.23023 1.19053 1.20277 0.88186 0.95080 1.49120 0.90292 1.19558 0.94625 0.92415 0.94289 1.21137 0.93415 0.99222 0.82720 1.45271 1.45715 1.32758 1.13610 1.15964 0.81665 0.81877 0.79918 1.90850 1.37007 1.39279 1.80987 1.47250 1.31597 1.43023 1.14877 1.21653 0.85533 0.91342 1.02666 1.21892 0.97245 1.00014 0.98158 1.21545 0.98617 0.98255 0.97263 1.21875 0.93909 0.97708 1.02425 1.20977 0.95559 0.90805 0.86327 0.92197 1.22399 0.97319 0.94368 0.91734 1.58920 1.48699 1.25122 1.06208 1.23098 1.00745 1.04937 0.95051 1.22829 1.02915 0.94436 1.02299 0.92410 0.93208 0.92294 0.75736 0.91854 0.89177 0.91138 0.90773 0.91943 0.92208 0.90235 0.91694 0.89394 0.92885 0.84752 0.86010 0.91214 0.89357 0.89818 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 13.96 55.43 0.77 -24.44 16 2 C 0.09 2.38 5.36 -17.82 -0.10 2.29 16 3 Si 0.89 22.46 23.91 -169.99 -4.06 18.40 16 4 H -0.27 -7.20 7.10 56.52 0.40 -6.80 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.26 -6.55 6.40 56.52 0.36 -6.19 16 7 C -0.49 -12.75 8.97 -34.44 -0.31 -13.06 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C -0.01 -0.17 1.42 -155.66 -0.22 -0.39 16 10 C 0.16 3.52 4.35 -4.04 -0.02 3.50 16 11 N -0.72 -14.88 4.78 -65.22 -0.31 -15.19 16 12 C 0.70 14.36 8.21 -86.92 -0.71 13.65 16 13 O -0.60 -13.53 11.76 5.29 0.06 -13.47 16 14 N -0.63 -10.53 2.97 -170.91 -0.51 -11.04 16 15 C 0.11 1.61 6.35 -3.71 -0.02 1.59 16 16 C -0.13 -1.80 6.08 -26.62 -0.16 -1.96 16 17 C -0.12 -1.39 5.88 -26.69 -0.16 -1.54 16 18 C -0.12 -1.60 5.12 -26.61 -0.14 -1.73 16 19 C 0.17 2.44 3.09 -67.60 -0.21 2.23 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 C 0.07 1.12 4.65 -3.82 -0.02 1.10 16 22 N -0.86 -10.40 8.98 -10.36 -0.09 -10.49 16 23 C -0.20 -4.08 9.96 -26.69 -0.27 -4.34 16 24 C -0.19 -3.64 9.93 -26.69 -0.26 -3.90 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 27 H 0.06 1.45 2.59 -51.92 -0.13 1.32 16 28 H 0.40 8.05 5.72 -40.82 -0.23 7.81 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.44 5.74 -51.93 -0.30 1.14 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.96 7.78 -51.93 -0.40 0.55 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.71 6.95 -51.93 -0.36 1.35 16 38 H 0.05 0.94 6.55 -51.93 -0.34 0.60 16 39 H 0.34 3.75 9.08 -39.29 -0.36 3.40 16 40 H 0.33 3.31 8.93 -39.29 -0.35 2.96 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -29.63 333.71 -8.85 -38.48 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -7.15 Total: 15.30 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.59 Total: -2.58 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.14 Total: -61.16 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.06 Total: -13.47 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.06 Total: 18.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.63 -8.85 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418127229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.102 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds