Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.47319 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47376 * 179.97438 * 17 16 15 19 19 C 1.46900 * 111.00566 * 180.02562 * 18 17 16 20 20 C 1.52993 * 117.50334 * 223.74690 * 19 18 17 21 21 C 1.52997 * 117.49944 * 155.08598 * 19 18 17 22 22 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 23 23 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 24 24 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 25 25 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 26 26 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 27 27 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 28 28 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 29 29 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 30 30 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 31 31 H 1.09006 * 109.47223 * 300.00621 * 16 15 14 32 32 H 1.09006 * 109.46845 * 59.99947 * 16 15 14 33 33 H 1.08995 * 109.47627 * 300.00066 * 17 16 15 34 34 H 1.09006 * 109.47072 * 60.00250 * 17 16 15 35 35 H 1.00906 * 111.00277 * 303.96042 * 18 17 16 36 36 H 1.09005 * 115.54531 * 9.42069 * 19 18 17 37 37 H 1.09008 * 117.49674 * 0.02562 * 20 19 18 38 38 H 1.09001 * 117.49934 * 145.01759 * 20 19 18 39 39 H 1.08998 * 117.49934 * 214.98089 * 21 19 18 40 40 H 1.09002 * 117.49996 * 359.97438 * 21 19 18 41 41 H 1.08997 * 117.50142 * 359.97438 * 22 9 7 42 42 H 1.09000 * 117.49511 * 145.02011 * 22 9 7 43 43 H 1.08996 * 117.49909 * 214.98045 * 23 9 7 44 44 H 1.09006 * 117.50020 * 359.97109 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.6099 -4.8022 6.0373 17 6 4.5503 -5.3852 7.4505 18 7 5.9150 -5.5888 7.9543 19 6 5.8970 -6.1494 9.3120 20 6 6.8658 -5.5536 10.3354 21 6 7.1208 -6.9497 9.7622 22 6 1.5730 -3.5795 -0.9303 23 6 0.2452 -2.8210 -1.0000 24 1 -0.4850 0.8368 -0.0731 25 1 0.3751 -2.1632 2.0411 26 1 0.3015 -3.8512 1.4812 27 1 3.0164 -3.0733 1.8316 28 1 4.1039 -3.8565 3.7429 29 1 2.6573 -3.9010 6.1682 30 1 2.6643 -5.5462 5.4890 31 1 5.1407 -5.4922 5.3812 32 1 5.1344 -3.8469 6.0606 33 1 4.0197 -4.6949 8.1063 34 1 4.0256 -6.3404 7.4277 35 1 6.4479 -6.1743 7.3287 36 1 4.9216 -6.4757 9.6729 37 1 7.5163 -4.7452 10.0013 38 1 6.5279 -5.4882 11.3696 39 1 6.9506 -7.8024 10.4195 40 1 7.9392 -7.0607 9.0507 41 1 2.3245 -3.3491 -1.6853 42 1 1.5428 -4.6172 -0.5978 43 1 -0.6578 -3.3599 -0.7135 44 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418128291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = 9.575155 kcal Electronic energy + Delta-G solvation = -21184.256339 eV Core-core repulsion = 17944.723002 eV Total energy + Delta-G solvation = -3239.533338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.40940 -38.30453 -36.82983 -35.75819 -33.68032 -33.18748 -31.94164 -30.15991 -26.40317 -25.31186 -24.05095 -22.76216 -21.84755 -21.25623 -21.14449 -20.19232 -19.36024 -17.62041 -16.63001 -16.34899 -16.09706 -15.61185 -15.27426 -14.83868 -14.62801 -14.20753 -13.98364 -13.75589 -13.28743 -13.11685 -12.81017 -12.58870 -12.05144 -11.85999 -11.75138 -11.66201 -11.54969 -11.26533 -10.98559 -10.93684 -10.88801 -10.68930 -10.52153 -10.21842 -9.71797 -9.43785 -9.02653 -8.83533 -8.68869 -8.46803 -8.21681 -7.96076 -6.05730 -4.15415 3.16069 3.26385 3.34706 3.35937 3.43754 3.68821 3.81653 4.36093 4.54213 4.59732 4.69293 4.75866 4.83215 5.00041 5.00964 5.22205 5.26535 5.27589 5.34705 5.40789 5.49162 5.57233 5.64539 5.80430 5.98722 6.01692 6.06893 6.37027 6.50279 6.61519 6.64667 6.72615 6.80312 6.87648 6.94191 7.14103 7.34810 7.43952 7.47655 7.64136 7.82626 8.35861 8.68081 8.85774 9.22043 9.51479 11.01467 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.002612 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.977419 B =10719.101260 C =11378.457499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.697 3.303 13 O -0.605 6.605 14 N -0.755 5.755 15 C 0.144 3.856 16 C -0.130 4.130 17 C 0.065 3.935 18 N -0.661 5.661 19 C 0.015 3.985 20 C -0.170 4.170 21 C -0.195 4.195 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.397 0.603 28 H 0.394 0.606 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.343 0.657 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.281 -11.756 14.080 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.023 3.977 10 C 0.058 3.942 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.485 6.485 14 N -0.412 5.412 15 C 0.018 3.982 16 C -0.168 4.168 17 C -0.065 4.065 18 N -0.291 5.291 19 C -0.096 4.096 20 C -0.208 4.208 21 C -0.233 4.233 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.230 0.770 28 H 0.227 0.773 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.162 0.838 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.131 -11.163 14.812 21.631 hybrid contribution 0.942 0.247 -0.619 1.154 sum 12.073 -10.916 14.194 21.596 Atomic orbital electron populations 1.69988 1.05870 1.26846 1.48351 1.24995 0.94832 0.98969 0.94366 0.86618 0.79921 0.83581 0.78032 1.20740 1.21198 1.19829 1.20334 0.92570 0.88586 1.52139 0.92266 1.19059 0.99371 0.93282 0.85987 1.20851 0.83301 0.97681 0.92351 1.45153 1.11254 1.66656 1.14254 1.16052 0.83905 0.78766 0.81599 1.90868 1.27932 1.60690 1.68996 1.45062 1.07704 1.71044 1.17354 1.20963 0.95849 0.98713 0.82656 1.21750 0.96869 1.02595 0.95576 1.21886 0.89160 0.99780 0.95661 1.60182 1.14724 1.52242 1.01977 1.22380 0.94587 1.01869 0.90739 1.23142 1.03225 0.96351 0.98081 1.23265 1.00048 0.95492 1.04493 1.23009 1.00689 0.95609 1.05507 1.22464 0.90807 1.01308 1.03435 0.92885 0.91737 0.94428 0.76992 0.77278 0.91812 0.92118 0.91400 0.90244 0.90327 0.94585 0.83803 0.88173 0.88244 0.88870 0.88757 0.88540 0.90453 0.91744 0.91799 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.40 12.65 55.43 0.70 -23.70 16 2 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.50 -12.84 8.59 -34.44 -0.30 -13.14 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 10 C 0.18 4.21 5.50 -4.04 -0.02 4.18 16 11 N -0.72 -14.25 5.48 -65.22 -0.36 -14.61 16 12 C 0.70 13.52 8.57 -86.91 -0.74 12.77 16 13 O -0.61 -14.15 16.34 5.29 0.09 -14.07 16 14 N -0.75 -10.69 5.56 -65.22 -0.36 -11.05 16 15 C 0.14 1.73 5.67 -4.04 -0.02 1.70 16 16 C -0.13 -1.11 5.59 -26.74 -0.15 -1.26 16 17 C 0.06 0.52 5.54 -3.83 -0.02 0.50 16 18 N -0.66 -5.19 6.75 -106.73 -0.72 -5.91 16 19 C 0.01 0.11 6.25 -67.72 -0.42 -0.32 16 20 C -0.17 -1.18 10.46 -26.70 -0.28 -1.46 16 21 C -0.19 -1.20 10.34 -26.70 -0.28 -1.48 16 22 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 23 C -0.14 -3.28 9.14 -26.70 -0.24 -3.53 16 24 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 25 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 26 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 27 H 0.40 7.10 8.35 -40.82 -0.34 6.76 16 28 H 0.39 4.51 8.49 -40.82 -0.35 4.16 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.34 2.34 8.69 -39.29 -0.34 2.00 16 36 H 0.10 0.70 7.90 -51.93 -0.41 0.29 16 37 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -30.65 369.93 -10.92 -41.56 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.75 Total: 11.11 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.07 Total: -4.54 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.74 Total: -55.27 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.07 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.65 -10.92 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418128291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.139 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds