Wall clock time and date at job start Tue Mar 31 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47180 * 270.00204 * 3 2 1 5 5 H 1.48504 * 109.46717 * 29.99831 * 3 2 1 6 6 H 1.48496 * 109.47128 * 150.00200 * 3 2 1 7 7 C 1.37874 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00142 * 173.55544 * 7 2 1 9 9 C 1.50703 * 120.00116 * 353.55014 * 7 2 1 10 10 C 1.53000 * 115.55016 * 85.40721 * 9 7 2 11 11 N 1.46494 * 109.47088 * 65.14065 * 10 9 7 12 12 C 1.34778 * 120.00166 * 178.28815 * 11 10 9 13 13 O 1.21589 * 119.99555 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00423 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00319 * 179.72266 * 14 12 11 16 16 H 1.08997 * 109.47093 * 325.27986 * 15 14 12 17 17 C 1.53005 * 109.46693 * 85.27751 * 15 14 12 18 18 C 1.52998 * 109.46719 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47298 * 299.99847 * 18 17 15 20 20 C 1.53005 * 109.47111 * 60.00393 * 19 18 17 21 21 H 1.08997 * 109.47159 * 59.99847 * 20 19 18 22 22 N 1.46896 * 109.47336 * 180.02562 * 20 19 18 23 23 C 1.52992 * 109.47229 * 205.27838 * 15 14 12 24 24 C 1.53003 * 117.50060 * 231.07967 * 9 7 2 25 25 C 1.52996 * 117.49555 * 299.73998 * 9 7 2 26 26 H 0.97000 * 120.00568 * 5.06932 * 1 2 3 27 27 H 1.09005 * 109.46793 * 305.14680 * 10 9 7 28 28 H 1.08994 * 109.47142 * 185.14729 * 10 9 7 29 29 H 0.96998 * 120.00328 * 358.29055 * 11 10 9 30 30 H 0.97001 * 119.99561 * 0.02562 * 14 12 11 31 31 H 1.08996 * 109.46849 * 299.99734 * 17 15 14 32 32 H 1.08997 * 109.47159 * 60.00276 * 17 15 14 33 33 H 1.09002 * 109.47150 * 179.97438 * 18 17 15 34 34 H 1.09007 * 109.47387 * 60.00203 * 18 17 15 35 35 H 1.08997 * 109.47234 * 300.00285 * 19 18 17 36 36 H 1.08998 * 109.47336 * 179.97438 * 19 18 17 37 37 H 1.00903 * 111.00151 * 300.00285 * 22 20 19 38 38 H 1.00905 * 110.99988 * 63.94850 * 22 20 19 39 39 H 1.09007 * 109.47163 * 300.00270 * 23 15 14 40 40 H 1.09002 * 109.47563 * 59.99663 * 23 15 14 41 41 H 1.08996 * 117.49924 * 215.00266 * 24 9 7 42 42 H 1.09005 * 117.49229 * 0.02562 * 24 9 7 43 43 H 1.09002 * 117.50301 * 359.96820 * 25 9 7 44 44 H 1.09001 * 117.50143 * 144.97157 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2583 -2.4951 0.1455 10 6 0.7022 -3.0861 -1.1516 11 7 1.8112 -3.4583 -2.0334 12 6 1.5600 -4.0345 -3.2256 13 8 0.4129 -4.2450 -3.5694 14 7 2.5803 -4.3775 -4.0367 15 6 2.3075 -5.0094 -5.3300 16 1 1.4343 -5.6557 -5.2416 17 6 2.0380 -3.9285 -6.3788 18 6 1.7524 -4.5884 -7.7293 19 6 2.9624 -5.4222 -8.1555 20 6 3.2319 -6.5031 -7.1067 21 1 2.3585 -7.1491 -7.0180 22 7 4.3940 -7.3033 -7.5155 23 6 3.5178 -5.8428 -5.7558 24 6 1.7472 -3.4738 1.2151 25 6 0.4419 -2.7016 1.4229 26 1 -0.4851 0.8367 -0.0742 27 1 0.0755 -2.3456 -1.6488 28 1 0.1076 -3.9703 -0.9224 29 1 2.7263 -3.2901 -1.7593 30 1 3.4954 -4.2099 -3.7622 31 1 1.1757 -3.3349 -6.0754 32 1 2.9112 -3.2822 -6.4673 33 1 1.5600 -3.8185 -8.4765 34 1 0.8790 -5.2345 -7.6406 35 1 3.8358 -4.7762 -8.2443 36 1 2.7588 -5.8927 -9.1174 37 1 4.2306 -7.7497 -8.4055 38 1 5.2302 -6.7391 -7.5422 39 1 4.3911 -5.1964 -5.8442 40 1 3.7099 -6.6127 -5.0085 41 1 1.6728 -4.5387 0.9947 42 1 2.6084 -3.1763 1.8134 43 1 0.4450 -1.8967 2.1579 44 1 -0.4916 -3.2582 1.3392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418128364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:46 Heat of formation + Delta-G solvation = -29.318157 kcal Electronic energy + Delta-G solvation = -22411.880060 eV Core-core repulsion = 19170.660182 eV Total energy + Delta-G solvation = -3241.219878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87492 -38.47023 -36.69888 -34.55152 -33.26782 -32.73449 -31.95329 -29.66973 -27.95646 -26.08779 -25.03222 -22.48769 -22.02679 -21.15768 -20.27585 -19.97908 -19.33914 -17.68087 -16.54059 -16.11412 -15.79318 -15.08783 -14.86528 -14.63422 -14.38244 -14.20772 -13.96066 -13.69857 -13.37933 -13.28903 -12.70191 -12.58843 -12.47157 -11.77662 -11.56615 -11.40685 -11.31655 -10.99737 -10.93709 -10.85798 -10.83304 -10.58263 -10.52061 -10.25080 -9.68983 -9.47617 -8.97797 -8.94447 -8.76651 -8.48095 -8.23244 -7.93540 -6.06411 -4.14932 3.21600 3.25792 3.33737 3.35441 3.83680 4.21779 4.35750 4.50982 4.59881 4.81312 4.95875 5.00475 5.07563 5.21819 5.26601 5.31911 5.34795 5.39752 5.48201 5.72493 5.81523 5.89284 5.94824 6.05610 6.08453 6.25080 6.33525 6.36911 6.49911 6.62889 6.71885 6.81144 6.87657 6.90413 7.11026 7.12260 7.37464 7.44848 7.49864 7.64834 7.82471 8.35909 8.71595 8.85702 9.26242 9.51588 11.01392 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.003656 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.153052 B = 7657.132935 C = 8143.451741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.183 3.817 11 N -0.721 5.721 12 C 0.698 3.302 13 O -0.604 6.604 14 N -0.750 5.750 15 C 0.170 3.830 16 H 0.086 0.914 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.153 4.153 20 C 0.094 3.906 21 H 0.084 0.916 22 N -0.845 5.845 23 C -0.118 4.118 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.395 0.605 30 H 0.392 0.608 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.341 0.659 38 H 0.339 0.661 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.023 -10.238 -13.606 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.398 3.602 13 O -0.483 6.483 14 N -0.406 5.406 15 C 0.063 3.937 16 H 0.104 0.896 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.193 4.193 20 C -0.018 4.018 21 H 0.102 0.898 22 N -0.373 5.373 23 C -0.156 4.156 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.228 0.772 30 H 0.225 0.775 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.621 -10.726 -13.136 18.206 hybrid contribution 1.295 1.923 -0.606 2.396 sum 7.916 -8.804 -13.742 18.139 Atomic orbital electron populations 1.69973 1.05874 1.26888 1.48243 1.24980 0.94790 0.98903 0.94343 0.86642 0.79932 0.83630 0.78100 1.20727 1.21168 1.19845 1.20326 0.92771 0.88646 1.51997 0.92287 1.19039 0.98565 0.93862 0.85779 1.20831 0.86651 0.96606 0.90022 1.45148 1.11252 1.63690 1.17206 1.16053 0.84647 0.78792 0.80689 1.90862 1.19855 1.61847 1.75754 1.45151 1.08378 1.67646 1.19384 1.20600 0.97963 0.93386 0.81735 0.89577 1.21986 1.02478 0.98422 0.94244 1.21416 0.97715 0.99138 0.96889 1.22438 0.99242 0.98617 0.98977 1.21398 0.93865 0.92957 0.93534 0.89833 1.58909 1.05237 1.36258 1.36909 1.21802 0.97755 0.99160 0.96932 1.23019 0.98622 0.95697 1.07463 1.22490 0.92298 1.01074 1.02734 0.92864 0.91282 0.94781 0.77150 0.77465 0.90891 0.92065 0.91865 0.91587 0.92029 0.92158 0.84681 0.84889 0.91671 0.90522 0.91641 0.90425 0.89846 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.38 12.91 55.43 0.72 -23.66 16 2 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.50 -12.88 8.63 -34.44 -0.30 -13.17 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.67 1.38 -155.66 -0.21 0.46 16 10 C 0.18 4.23 5.50 -4.05 -0.02 4.21 16 11 N -0.72 -14.27 5.48 -65.23 -0.36 -14.63 16 12 C 0.70 13.50 8.53 -86.92 -0.74 12.76 16 13 O -0.60 -13.99 16.00 5.29 0.08 -13.90 16 14 N -0.75 -10.74 5.08 -58.68 -0.30 -11.04 16 15 C 0.17 2.12 2.45 -67.93 -0.17 1.95 16 16 H 0.09 1.26 7.57 -51.93 -0.39 0.87 16 17 C -0.13 -1.60 5.50 -26.73 -0.15 -1.75 16 18 C -0.11 -1.08 5.92 -26.73 -0.16 -1.24 16 19 C -0.15 -1.19 5.49 -26.73 -0.15 -1.34 16 20 C 0.09 0.79 3.25 -67.68 -0.22 0.57 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 22 N -0.85 -6.15 9.25 -4.64 -0.04 -6.20 16 23 C -0.12 -1.13 4.93 -26.71 -0.13 -1.26 16 24 C -0.21 -4.41 9.96 -26.69 -0.27 -4.67 16 25 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 26 H 0.26 7.02 8.32 -40.82 -0.34 6.69 16 27 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.40 7.09 8.38 -40.82 -0.34 6.75 16 30 H 0.39 4.62 8.62 -40.82 -0.35 4.27 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.34 1.98 9.04 -39.29 -0.36 1.63 16 38 H 0.34 2.12 8.98 -39.29 -0.35 1.77 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 44 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -30.16 356.76 -10.08 -40.25 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -7.68 Total: 13.52 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.86 Total: -5.27 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.02 Total: -55.53 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.16 -10.08 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418128364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.929 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds