Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99965 * 2 1 4 4 H 1.48505 * 109.47046 * 271.23386 * 3 2 1 5 5 H 1.48493 * 109.47460 * 31.23538 * 3 2 1 6 6 H 1.48507 * 109.46971 * 151.23928 * 3 2 1 7 7 C 1.37881 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99471 * 358.78912 * 7 2 1 9 9 C 1.50698 * 120.00229 * 178.78837 * 7 2 1 10 10 C 1.53006 * 115.54402 * 87.32676 * 9 7 2 11 11 N 1.46493 * 109.47215 * 32.60787 * 10 9 7 12 12 C 1.34780 * 120.00125 * 185.59834 * 11 10 9 13 13 O 1.21593 * 119.99623 * 4.88154 * 12 11 10 14 14 N 1.34777 * 120.00202 * 184.88639 * 12 11 10 15 15 C 1.46504 * 119.99618 * 175.07012 * 14 12 11 16 16 H 1.08997 * 109.47210 * 324.99089 * 15 14 12 17 17 C 1.52997 * 109.47508 * 84.99581 * 15 14 12 18 18 C 1.53008 * 109.46749 * 59.99485 * 17 15 14 19 19 C 1.52998 * 109.47188 * 60.00306 * 18 17 15 20 20 C 1.52997 * 109.47026 * 299.99524 * 19 18 17 21 21 H 1.08997 * 109.47218 * 299.99938 * 20 19 18 22 22 N 1.46903 * 109.46889 * 179.97438 * 20 19 18 23 23 C 1.53004 * 109.47208 * 60.00440 * 20 19 18 24 24 C 1.52997 * 117.51947 * 233.02861 * 9 7 2 25 25 C 1.52993 * 117.50203 * 301.66109 * 9 7 2 26 26 H 0.96998 * 120.00061 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47319 * 272.60350 * 10 9 7 28 28 H 1.09002 * 109.46665 * 152.61058 * 10 9 7 29 29 H 0.97004 * 120.00316 * 5.59585 * 11 10 9 30 30 H 0.97001 * 119.99735 * 355.05727 * 14 12 11 31 31 H 1.08998 * 109.46927 * 300.00280 * 17 15 14 32 32 H 1.08995 * 109.47214 * 179.97438 * 17 15 14 33 33 H 1.08995 * 109.47035 * 299.99831 * 18 17 15 34 34 H 1.09002 * 109.46438 * 180.02562 * 18 17 15 35 35 H 1.08997 * 109.46976 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.47170 * 59.99587 * 19 18 17 37 37 H 1.00899 * 111.00054 * 60.00651 * 22 20 19 38 38 H 1.00900 * 110.99796 * 183.95574 * 22 20 19 39 39 H 1.08997 * 109.47440 * 59.99635 * 23 20 19 40 40 H 1.08992 * 109.47306 * 180.02562 * 23 20 19 41 41 H 1.08999 * 117.49573 * 214.97400 * 24 9 7 42 42 H 1.08997 * 117.50033 * 359.97438 * 24 9 7 43 43 H 1.09001 * 117.49715 * 359.96963 * 25 9 7 44 44 H 1.09002 * 117.50218 * 144.99489 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4705 2.0615 -1.3998 5 1 1.4600 2.6450 0.7260 6 1 3.5596 1.4327 0.6737 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1293 0.0188 9 6 3.5113 -1.1942 -0.0281 10 6 4.1962 -1.1159 1.3378 11 7 3.3751 -1.8054 2.3360 12 6 3.7242 -1.7690 3.6374 13 8 4.6687 -1.0917 3.9947 14 7 3.0264 -2.4834 4.5425 15 6 3.4699 -2.5301 5.9380 16 1 4.5592 -2.5162 5.9738 17 6 2.9193 -1.3162 6.6891 18 6 1.3902 -1.3360 6.6388 19 6 0.8748 -2.6185 7.2949 20 6 1.4254 -3.8323 6.5439 21 1 1.0955 -3.7975 5.5056 22 7 0.9310 -5.0637 7.1742 23 6 2.9545 -3.8127 6.5941 24 6 4.1983 -2.0212 -1.1166 25 6 4.1964 -0.4937 -1.2031 26 1 -0.4850 0.8400 -0.0004 27 1 4.3161 -0.0712 1.6249 28 1 5.1752 -1.5918 1.2811 29 1 2.5802 -2.2882 2.0605 30 1 2.2306 -2.9664 4.2700 31 1 3.2864 -0.4026 6.2216 32 1 3.2489 -1.3513 7.7275 33 1 1.0604 -1.3011 5.6006 34 1 0.9980 -0.4709 7.1736 35 1 -0.2145 -2.6323 7.2595 36 1 1.2047 -2.6533 8.3333 37 1 -0.0771 -5.1008 7.1540 38 1 1.3317 -5.8799 6.7367 39 1 3.2844 -3.8476 7.6324 40 1 3.3467 -4.6772 6.0587 41 1 5.1383 -2.5096 -0.8596 42 1 3.5605 -2.5658 -1.8128 43 1 3.5574 -0.0331 -1.9565 44 1 5.1352 0.0229 -1.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418128366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = -20.886896 kcal Electronic energy + Delta-G solvation = -23069.817780 eV Core-core repulsion = 19828.963509 eV Total energy + Delta-G solvation = -3240.854271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04557 -38.37238 -36.99584 -34.26786 -33.31668 -32.53784 -32.19269 -29.81131 -28.07121 -26.35585 -25.15920 -22.57489 -21.84021 -21.69743 -20.75160 -19.39001 -18.83626 -17.72088 -16.53323 -15.86349 -15.63396 -15.40921 -15.07645 -14.97811 -14.78605 -14.16101 -13.98444 -13.80235 -12.98199 -12.89431 -12.64740 -12.49465 -12.31678 -12.19194 -12.02672 -11.97284 -11.69655 -11.17949 -10.69886 -10.67957 -10.51421 -10.44997 -10.19102 -10.17242 -9.73116 -9.54118 -9.16756 -8.90042 -8.78384 -8.66064 -8.60124 -7.96798 -6.21850 -4.27030 3.25542 3.29484 3.37636 3.44769 3.80946 4.22045 4.37594 4.62248 4.70476 4.75195 4.96727 5.05048 5.10168 5.15128 5.23176 5.39295 5.43624 5.53973 5.64595 5.74465 5.83965 5.95263 5.97713 5.99573 6.08973 6.12473 6.19789 6.32779 6.36243 6.38040 6.45335 6.55311 6.71994 6.89844 6.94143 6.95039 7.07585 7.22143 7.34313 7.56946 7.66966 8.35550 8.71806 8.78017 9.24845 9.42454 10.88593 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.004764 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.845158 B = 5876.581005 C = 6183.207200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.085 3.915 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.254 1.254 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.172 3.828 11 N -0.715 5.715 12 C 0.698 3.302 13 O -0.609 6.609 14 N -0.746 5.746 15 C 0.170 3.830 16 H 0.086 0.914 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.109 4.109 20 C 0.089 3.911 21 H 0.037 0.963 22 N -0.848 5.848 23 C -0.118 4.118 24 C -0.179 4.179 25 C -0.196 4.196 26 H 0.266 0.734 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.406 0.594 30 H 0.392 0.608 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.341 0.659 38 H 0.340 0.660 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -7.514 11.774 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.119 4.119 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.178 1.178 7 C -0.529 4.529 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.047 3.953 11 N -0.370 5.370 12 C 0.398 3.602 13 O -0.490 6.490 14 N -0.403 5.403 15 C 0.063 3.937 16 H 0.104 0.896 17 C -0.171 4.171 18 C -0.157 4.157 19 C -0.147 4.147 20 C -0.023 4.023 21 H 0.054 0.946 22 N -0.378 5.378 23 C -0.157 4.157 24 C -0.216 4.216 25 C -0.234 4.234 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.243 0.757 30 H 0.227 0.773 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.815 -6.528 12.727 14.804 hybrid contribution -0.878 0.372 -1.362 1.663 sum 2.936 -6.156 11.365 13.255 Atomic orbital electron populations 1.69880 1.06394 1.27346 1.49370 1.24939 0.94519 0.99164 0.93258 0.86877 0.81009 0.83172 0.78326 1.20483 1.22188 1.17836 1.20106 0.86095 0.94351 1.52381 0.90425 1.19638 0.95382 1.00434 0.86213 1.20861 0.91004 0.96047 0.87407 1.45113 1.30968 1.56698 1.04187 1.16064 0.82525 0.80313 0.81274 1.90843 1.32198 1.45929 1.80013 1.45229 1.31450 1.55260 1.08350 1.20657 0.99430 0.93806 0.79775 0.89567 1.21952 0.95625 0.99390 1.00091 1.21488 0.95787 0.96967 1.01456 1.21542 0.99815 0.93447 0.99941 1.21344 0.94954 0.90322 0.95639 0.94552 1.58763 1.12578 1.04097 1.62353 1.21842 0.94699 0.97223 1.01891 1.22905 1.01004 0.92920 1.04784 1.22947 1.01499 0.95033 1.03900 0.92470 0.92210 0.94035 0.75712 0.77312 0.90961 0.91478 0.91516 0.91938 0.92330 0.91279 0.84692 0.84749 0.89798 0.91575 0.90859 0.89535 0.89297 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 21.47 25.16 -169.99 -4.28 17.20 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.25 -6.08 5.30 56.52 0.30 -5.78 16 7 C -0.49 -12.54 7.79 -34.44 -0.27 -12.81 16 8 H 0.08 2.12 8.06 -52.49 -0.42 1.69 16 9 C -0.02 -0.34 1.24 -155.66 -0.19 -0.53 16 10 C 0.17 3.66 5.63 -4.04 -0.02 3.64 16 11 N -0.72 -14.25 5.29 -65.22 -0.34 -14.59 16 12 C 0.70 13.47 8.52 -86.91 -0.74 12.73 16 13 O -0.61 -13.72 15.99 5.28 0.08 -13.64 16 14 N -0.75 -11.02 4.24 -58.67 -0.25 -11.27 16 15 C 0.17 2.17 2.75 -67.92 -0.19 1.99 16 16 H 0.09 1.23 7.65 -51.93 -0.40 0.83 16 17 C -0.13 -1.67 5.60 -26.73 -0.15 -1.82 16 18 C -0.12 -1.41 5.77 -26.73 -0.15 -1.57 16 19 C -0.11 -1.11 5.50 -26.73 -0.15 -1.26 16 20 C 0.09 0.86 3.07 -67.71 -0.21 0.65 16 21 H 0.04 0.38 6.51 -51.93 -0.34 0.04 16 22 N -0.85 -7.13 9.25 -4.67 -0.04 -7.18 16 23 C -0.12 -1.19 5.15 -26.72 -0.14 -1.33 16 24 C -0.18 -3.46 9.88 -26.73 -0.26 -3.73 16 25 C -0.20 -4.04 7.60 -26.74 -0.20 -4.24 16 26 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.06 1.40 6.39 -51.93 -0.33 1.07 16 28 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 29 H 0.41 7.91 7.30 -40.82 -0.30 7.61 16 30 H 0.39 5.19 6.89 -40.82 -0.28 4.91 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.92 7.60 -51.93 -0.39 0.52 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.34 2.53 9.04 -39.29 -0.36 2.18 16 38 H 0.34 2.49 8.99 -39.29 -0.35 2.14 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.26 8.04 -51.93 -0.42 0.85 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.09 1.92 7.22 -51.93 -0.37 1.54 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -29.95 340.45 -9.11 -39.06 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -7.41 Total: 16.30 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.77 Total: -6.08 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.14 Total: -57.97 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.28 Total: 17.20 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.95 -9.11 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418128366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.172 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds