Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99965 * 2 1 4 4 H 1.48505 * 109.47046 * 271.23386 * 3 2 1 5 5 H 1.48493 * 109.47460 * 31.23538 * 3 2 1 6 6 H 1.48507 * 109.46971 * 151.23928 * 3 2 1 7 7 C 1.37881 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99471 * 358.78912 * 7 2 1 9 9 C 1.50698 * 120.00229 * 178.78837 * 7 2 1 10 10 C 1.53006 * 115.54402 * 87.32676 * 9 7 2 11 11 N 1.46493 * 109.47215 * 32.60787 * 10 9 7 12 12 C 1.34780 * 120.00125 * 185.59834 * 11 10 9 13 13 O 1.21593 * 119.99623 * 4.88154 * 12 11 10 14 14 N 1.34777 * 120.00202 * 184.88639 * 12 11 10 15 15 C 1.46504 * 119.99618 * 175.07012 * 14 12 11 16 16 H 1.08997 * 109.47210 * 324.99089 * 15 14 12 17 17 C 1.52997 * 109.47508 * 84.99581 * 15 14 12 18 18 C 1.53008 * 109.46749 * 59.99485 * 17 15 14 19 19 C 1.52998 * 109.47188 * 60.00306 * 18 17 15 20 20 C 1.52997 * 109.47026 * 299.99524 * 19 18 17 21 21 H 1.08997 * 109.47218 * 299.99938 * 20 19 18 22 22 N 1.46903 * 109.46889 * 179.97438 * 20 19 18 23 23 C 1.53004 * 109.47208 * 60.00440 * 20 19 18 24 24 C 1.52997 * 117.51947 * 233.02861 * 9 7 2 25 25 C 1.52993 * 117.50203 * 301.66109 * 9 7 2 26 26 H 0.96998 * 120.00061 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47319 * 272.60350 * 10 9 7 28 28 H 1.09002 * 109.46665 * 152.61058 * 10 9 7 29 29 H 0.97004 * 120.00316 * 5.59585 * 11 10 9 30 30 H 0.97001 * 119.99735 * 355.05727 * 14 12 11 31 31 H 1.08998 * 109.46927 * 300.00280 * 17 15 14 32 32 H 1.08995 * 109.47214 * 179.97438 * 17 15 14 33 33 H 1.08995 * 109.47035 * 299.99831 * 18 17 15 34 34 H 1.09002 * 109.46438 * 180.02562 * 18 17 15 35 35 H 1.08997 * 109.46976 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.47170 * 59.99587 * 19 18 17 37 37 H 1.00899 * 111.00054 * 60.00651 * 22 20 19 38 38 H 1.00900 * 110.99796 * 183.95574 * 22 20 19 39 39 H 1.08997 * 109.47440 * 59.99635 * 23 20 19 40 40 H 1.08992 * 109.47306 * 180.02562 * 23 20 19 41 41 H 1.08999 * 117.49573 * 214.97400 * 24 9 7 42 42 H 1.08997 * 117.50033 * 359.97438 * 24 9 7 43 43 H 1.09001 * 117.49715 * 359.96963 * 25 9 7 44 44 H 1.09002 * 117.50218 * 144.99489 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4705 2.0615 -1.3998 5 1 1.4600 2.6450 0.7260 6 1 3.5596 1.4327 0.6737 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1293 0.0188 9 6 3.5113 -1.1942 -0.0281 10 6 4.1962 -1.1159 1.3378 11 7 3.3751 -1.8054 2.3360 12 6 3.7242 -1.7690 3.6374 13 8 4.6687 -1.0917 3.9947 14 7 3.0264 -2.4834 4.5425 15 6 3.4699 -2.5301 5.9380 16 1 4.5592 -2.5162 5.9738 17 6 2.9193 -1.3162 6.6891 18 6 1.3902 -1.3360 6.6388 19 6 0.8748 -2.6185 7.2949 20 6 1.4254 -3.8323 6.5439 21 1 1.0955 -3.7975 5.5056 22 7 0.9310 -5.0637 7.1742 23 6 2.9545 -3.8127 6.5941 24 6 4.1983 -2.0212 -1.1166 25 6 4.1964 -0.4937 -1.2031 26 1 -0.4850 0.8400 -0.0004 27 1 4.3161 -0.0712 1.6249 28 1 5.1752 -1.5918 1.2811 29 1 2.5802 -2.2882 2.0605 30 1 2.2306 -2.9664 4.2700 31 1 3.2864 -0.4026 6.2216 32 1 3.2489 -1.3513 7.7275 33 1 1.0604 -1.3011 5.6006 34 1 0.9980 -0.4709 7.1736 35 1 -0.2145 -2.6323 7.2595 36 1 1.2047 -2.6533 8.3333 37 1 -0.0771 -5.1008 7.1540 38 1 1.3317 -5.8799 6.7367 39 1 3.2844 -3.8476 7.6324 40 1 3.3467 -4.6772 6.0587 41 1 5.1383 -2.5096 -0.8596 42 1 3.5605 -2.5658 -1.8128 43 1 3.5574 -0.0331 -1.9565 44 1 5.1352 0.0229 -1.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418128366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = -42.899383 kcal Electronic energy + Delta-G solvation = -23070.772313 eV Core-core repulsion = 19828.963509 eV Total energy + Delta-G solvation = -3241.808804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34297 -39.65385 -38.60960 -35.30951 -34.93801 -34.25114 -33.58839 -30.88732 -28.93011 -28.12682 -26.97757 -23.54609 -23.32291 -22.79432 -22.08673 -21.14942 -20.00691 -19.19649 -18.33402 -17.23137 -16.77190 -16.70721 -16.24702 -16.21404 -16.00995 -15.68152 -15.24669 -15.12078 -14.81172 -14.52571 -14.26749 -14.01736 -13.49734 -13.21726 -13.12022 -13.08248 -12.90633 -12.60572 -12.53801 -12.15695 -12.00790 -11.68077 -11.56554 -11.40997 -11.25406 -11.12331 -10.95320 -10.67068 -10.40176 -10.12499 -9.59540 -9.50840 -8.31975 -6.37111 1.30636 1.38080 1.48096 1.90028 2.26675 2.35083 3.03747 3.15965 3.43154 3.56096 3.73917 3.81505 4.08348 4.14908 4.17967 4.28913 4.36423 4.41550 4.48636 4.50531 4.63889 4.65910 4.69158 4.84848 4.87831 4.90093 5.07738 5.09472 5.11610 5.17521 5.22883 5.27760 5.33111 5.42588 5.49541 5.63983 5.70404 5.79447 6.16444 6.26039 6.28723 6.63046 6.71071 7.23759 7.34263 7.71563 8.81459 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.004764 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.845158 B = 5876.581005 C = 6183.207200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.039 3.961 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.306 1.306 6 H -0.246 1.246 7 C -0.474 4.474 8 H 0.051 0.949 9 C -0.041 4.041 10 C 0.180 3.820 11 N -0.718 5.718 12 C 0.695 3.305 13 O -0.643 6.643 14 N -0.730 5.730 15 C 0.167 3.833 16 H 0.073 0.927 17 C -0.128 4.128 18 C -0.116 4.116 19 C -0.103 4.103 20 C 0.091 3.909 21 H 0.028 0.972 22 N -0.846 5.846 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.196 4.196 26 H 0.264 0.736 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.407 0.593 30 H 0.401 0.599 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.348 0.652 38 H 0.348 0.652 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -8.726 12.558 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.194 1.194 5 H -0.234 1.234 6 H -0.169 1.169 7 C -0.511 4.511 8 H 0.069 0.931 9 C -0.042 4.042 10 C 0.055 3.945 11 N -0.373 5.373 12 C 0.395 3.605 13 O -0.526 6.526 14 N -0.386 5.386 15 C 0.061 3.939 16 H 0.091 0.909 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.141 4.141 20 C -0.020 4.020 21 H 0.046 0.954 22 N -0.377 5.377 23 C -0.144 4.144 24 C -0.191 4.191 25 C -0.233 4.233 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.244 0.756 30 H 0.238 0.762 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.903 -7.779 13.519 16.349 hybrid contribution -1.226 0.669 -1.576 2.106 sum 3.677 -7.109 11.943 14.377 Atomic orbital electron populations 1.69985 1.07762 1.27730 1.52133 1.25529 0.94897 1.01791 0.93787 0.86188 0.80209 0.80189 0.78644 1.19408 1.23407 1.16928 1.20225 0.88121 0.92864 1.49928 0.93053 1.19548 0.93429 1.03819 0.87433 1.20709 0.91858 0.95002 0.86969 1.45070 1.30962 1.56746 1.04489 1.16224 0.82460 0.80374 0.81434 1.90815 1.33826 1.47458 1.80471 1.45178 1.30989 1.53876 1.08589 1.20828 0.98830 0.95561 0.78664 0.90902 1.21910 0.96151 0.97675 1.00980 1.21444 0.95143 0.98476 1.00330 1.21478 1.00121 0.92426 1.00056 1.21256 0.94627 0.90918 0.95247 0.95414 1.58720 1.13229 1.03760 1.62027 1.21747 0.94876 0.95584 1.02235 1.22951 1.01548 0.92308 1.02263 1.22997 1.01865 0.96274 1.02210 0.92734 0.94607 0.92445 0.75631 0.76238 0.94350 0.89221 0.93841 0.91493 0.91775 0.90483 0.83898 0.83865 0.88542 0.90792 0.87849 0.89650 0.90477 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.14 13.96 21.45 0.30 -54.84 16 2 C 0.04 2.14 5.47 84.66 0.46 2.60 16 3 Si 0.92 44.29 25.16 68.60 1.73 46.01 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 6 H -0.25 -11.40 5.30 99.48 0.53 -10.87 16 7 C -0.47 -24.22 7.79 25.60 0.20 -24.02 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 9 C -0.04 -1.75 1.24 -52.93 -0.07 -1.82 16 10 C 0.18 7.47 5.63 86.38 0.49 7.96 16 11 N -0.72 -28.43 5.29 -478.52 -2.53 -30.96 16 12 C 0.70 26.78 8.52 179.05 1.52 28.31 16 13 O -0.64 -29.09 15.99 -4.01 -0.06 -29.16 16 14 N -0.73 -21.31 4.24 -457.78 -1.94 -23.25 16 15 C 0.17 4.13 2.75 44.99 0.12 4.25 16 16 H 0.07 2.04 7.65 -2.39 -0.02 2.02 16 17 C -0.13 -3.19 5.60 30.60 0.17 -3.02 16 18 C -0.12 -2.67 5.77 30.60 0.18 -2.50 16 19 C -0.10 -1.89 5.50 30.59 0.17 -1.72 16 20 C 0.09 1.58 3.07 44.92 0.14 1.72 16 21 H 0.03 0.54 6.51 -2.39 -0.02 0.52 16 22 N -0.85 -12.04 9.25 -168.67 -1.56 -13.60 16 23 C -0.11 -1.90 5.15 30.60 0.16 -1.74 16 24 C -0.15 -5.51 9.88 30.59 0.30 -5.20 16 25 C -0.20 -7.59 7.60 30.59 0.23 -7.36 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.04 1.65 6.39 -2.38 -0.02 1.64 16 28 H 0.06 2.20 7.89 -2.39 -0.02 2.18 16 29 H 0.41 15.88 7.30 -92.71 -0.68 15.21 16 30 H 0.40 10.40 6.89 -92.71 -0.64 9.76 16 31 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.20 7.60 -2.39 -0.02 1.18 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.35 4.32 9.04 -89.69 -0.81 3.51 16 38 H 0.35 4.17 8.99 -89.69 -0.81 3.37 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 3.12 8.04 -2.39 -0.02 3.10 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.08 3.18 7.22 -2.39 -0.02 3.16 16 44 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -64.70 340.45 -2.07 -66.77 By element: Atomic # 1 Polarization: 43.64 SS G_CDS: -2.08 Total: 41.55 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 4.08 Total: -2.54 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -5.73 Total: -122.65 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.73 Total: 46.01 kcal Total: -64.70 -2.07 -66.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418128366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.873 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds