Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99411 * 2 1 4 4 H 1.48492 * 109.47266 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47007 * 120.00440 * 3 2 1 6 6 H 1.48507 * 109.47109 * 239.99860 * 3 2 1 7 7 C 1.37877 * 120.00474 * 180.27506 * 2 1 3 8 8 H 1.08002 * 119.99893 * 185.14125 * 7 2 1 9 9 C 1.50696 * 119.99700 * 5.14512 * 7 2 1 10 10 C 1.53002 * 115.54950 * 279.44085 * 9 7 2 11 11 N 1.46501 * 109.47342 * 294.81383 * 10 9 7 12 12 C 1.34774 * 120.00294 * 184.79014 * 11 10 9 13 13 O 1.21582 * 119.99918 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00376 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00537 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.46805 * 34.99539 * 15 14 12 17 17 C 1.52999 * 109.47267 * 275.00080 * 15 14 12 18 18 C 1.52998 * 109.47736 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46876 * 59.99601 * 18 17 15 20 20 C 1.53002 * 109.47443 * 300.00171 * 19 18 17 21 21 H 1.09001 * 109.47098 * 300.00416 * 20 19 18 22 22 N 1.46900 * 109.47318 * 179.97438 * 20 19 18 23 23 C 1.52993 * 109.47560 * 154.99951 * 15 14 12 24 24 C 1.53003 * 117.49855 * 133.73969 * 9 7 2 25 25 C 1.53000 * 117.50149 * 65.11327 * 9 7 2 26 26 H 0.97006 * 119.99488 * 175.00904 * 1 2 3 27 27 H 1.09003 * 109.47426 * 54.81003 * 10 9 7 28 28 H 1.09000 * 109.47231 * 174.81651 * 10 9 7 29 29 H 0.97004 * 120.00086 * 4.78883 * 11 10 9 30 30 H 0.97003 * 119.99436 * 0.02562 * 14 12 11 31 31 H 1.09001 * 109.46786 * 300.00039 * 17 15 14 32 32 H 1.09004 * 109.47012 * 59.99517 * 17 15 14 33 33 H 1.08995 * 109.47490 * 179.97438 * 18 17 15 34 34 H 1.09002 * 109.46500 * 300.00201 * 18 17 15 35 35 H 1.09001 * 109.47313 * 60.00456 * 19 18 17 36 36 H 1.08999 * 109.47058 * 180.02562 * 19 18 17 37 37 H 1.00903 * 110.99970 * 60.00419 * 22 20 19 38 38 H 1.00900 * 111.00274 * 183.95589 * 22 20 19 39 39 H 1.09004 * 109.47022 * 300.00187 * 23 15 14 40 40 H 1.09001 * 109.47398 * 59.99951 * 23 15 14 41 41 H 1.09001 * 117.49582 * 359.97438 * 24 9 7 42 42 H 1.08999 * 117.50048 * 145.01976 * 24 9 7 43 43 H 1.09000 * 117.49877 * 214.97950 * 25 9 7 44 44 H 1.08996 * 117.49340 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0057 8 1 3.0814 -1.1962 0.0781 9 6 1.2557 -2.4959 -0.1290 10 6 0.6263 -3.0200 1.1633 11 7 1.6837 -3.3573 2.1197 12 6 1.3688 -3.9312 3.2978 13 8 0.2072 -4.1686 3.5671 14 7 2.3414 -4.2409 4.1778 15 6 1.9992 -4.8642 5.4586 16 1 1.1515 -5.5354 5.3209 17 6 1.6307 -3.7786 6.4718 18 6 1.2727 -4.4294 7.8093 19 6 2.4730 -5.2242 8.3272 20 6 2.8414 -6.3100 7.3141 21 1 1.9936 -6.9809 7.1761 22 7 3.9944 -7.0726 7.8111 23 6 3.1999 -5.6585 5.9763 24 6 1.7918 -3.5278 -1.1234 25 6 0.5066 -2.7589 -1.4369 26 1 -0.4850 -0.8370 -0.0731 27 1 -0.0187 -2.2524 1.5907 28 1 0.0364 -3.9103 0.9451 29 1 2.6104 -3.1675 1.9050 30 1 3.2681 -4.0505 3.9634 31 1 2.4784 -3.1073 6.6094 32 1 0.7753 -3.2126 6.1029 33 1 1.0106 -3.6560 8.5312 34 1 0.4248 -5.1005 7.6713 35 1 3.3209 -4.5532 8.4652 36 1 2.2178 -5.6883 9.2799 37 1 3.7833 -7.5126 8.6943 38 1 4.2976 -7.7538 7.1313 39 1 3.4624 -6.4320 5.2545 40 1 4.0476 -4.9873 6.1140 41 1 2.6859 -3.2648 -1.6886 42 1 1.6962 -4.5804 -0.8570 43 1 -0.4344 -3.3057 -1.3767 44 1 0.5552 -1.9901 -2.2080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418128369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -33.591218 kcal Electronic energy + Delta-G solvation = -22465.560577 eV Core-core repulsion = 19224.155405 eV Total energy + Delta-G solvation = -3241.405172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91475 -38.48719 -36.98653 -34.55419 -33.37661 -32.84564 -31.93533 -29.66705 -28.09619 -25.97608 -24.78116 -22.57069 -22.01204 -21.34022 -20.28610 -19.86624 -19.59580 -17.79512 -16.76438 -16.15287 -15.72198 -15.24777 -15.11482 -14.89025 -14.41846 -14.16753 -13.78712 -13.76946 -13.41076 -13.11268 -12.72301 -12.57038 -12.36257 -12.19973 -11.82077 -11.67827 -11.32718 -10.93357 -10.85177 -10.80676 -10.57822 -10.55611 -10.49895 -10.14526 -9.78517 -9.55811 -9.01797 -8.86368 -8.66017 -8.51603 -8.38878 -8.05901 -6.38692 -4.15169 3.13717 3.40541 3.41345 3.60490 3.75071 4.11560 4.46917 4.54639 4.58096 4.78406 4.93289 4.99013 5.12450 5.20261 5.27855 5.30056 5.30578 5.37118 5.46431 5.76237 5.83661 5.86149 5.90802 5.99284 6.05076 6.15053 6.24457 6.26540 6.31232 6.43143 6.52641 6.67046 6.79848 6.84555 6.85322 7.10373 7.17960 7.21446 7.28708 7.52421 8.17505 8.33309 8.62938 8.81916 9.16968 9.61035 11.00387 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.003684 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.819392 B = 7599.301072 C = 8080.846873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.576 4.576 8 H 0.052 0.948 9 C 0.007 3.993 10 C 0.178 3.822 11 N -0.719 5.719 12 C 0.699 3.301 13 O -0.604 6.604 14 N -0.749 5.749 15 C 0.170 3.830 16 H 0.084 0.916 17 C -0.132 4.132 18 C -0.115 4.115 19 C -0.112 4.112 20 C 0.095 3.905 21 H 0.037 0.963 22 N -0.848 5.848 23 C -0.119 4.119 24 C -0.193 4.193 25 C -0.174 4.174 26 H 0.276 0.724 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.397 0.603 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.341 0.659 38 H 0.341 0.659 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 -11.679 13.228 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.614 4.614 8 H 0.070 0.930 9 C 0.006 3.994 10 C 0.053 3.947 11 N -0.371 5.371 12 C 0.399 3.601 13 O -0.484 6.484 14 N -0.404 5.404 15 C 0.063 3.937 16 H 0.102 0.898 17 C -0.171 4.171 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.016 4.016 21 H 0.055 0.945 22 N -0.378 5.378 23 C -0.158 4.158 24 C -0.230 4.230 25 C -0.212 4.212 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.231 0.769 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.144 -9.530 13.512 17.640 hybrid contribution 0.455 -2.327 -0.449 2.413 sum 6.599 -11.857 13.063 18.836 Atomic orbital electron populations 1.70731 1.06815 1.31715 1.44089 1.25762 0.96530 1.02281 0.93170 0.83576 0.74940 0.75540 0.76448 1.20785 1.21514 1.21476 1.21187 0.93735 0.89630 1.56810 0.92960 1.19334 0.98800 0.95185 0.86080 1.20869 0.88049 0.97181 0.88554 1.45044 1.11555 1.64005 1.16540 1.16036 0.84828 0.78775 0.80474 1.90861 1.17982 1.61192 1.78340 1.45144 1.09073 1.68016 1.18210 1.20609 0.97268 0.93836 0.81953 0.89828 1.21983 1.02294 0.98344 0.94513 1.21469 0.97655 0.99452 0.96810 1.21583 0.98625 0.97354 0.97474 1.21256 0.91258 0.94797 0.94336 0.94474 1.58708 1.37781 1.33085 1.08219 1.21813 0.98282 0.99795 0.95872 1.22845 0.97688 0.95536 1.06952 1.22772 0.93732 1.02515 1.02227 0.91272 0.91977 0.94438 0.76898 0.77355 0.91772 0.90967 0.91474 0.91849 0.91011 0.92240 0.84681 0.84649 0.91617 0.90538 0.90126 0.91404 0.91297 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 13.61 55.43 0.75 -25.36 16 2 C 0.03 0.80 5.42 -17.82 -0.10 0.70 16 3 Si 1.07 24.29 29.91 -169.99 -5.08 19.21 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.58 -15.03 8.57 -34.44 -0.30 -15.33 16 8 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 9 C 0.01 0.16 0.91 -155.66 -0.14 0.02 16 10 C 0.18 4.09 5.36 -4.04 -0.02 4.07 16 11 N -0.72 -14.37 5.48 -65.22 -0.36 -14.73 16 12 C 0.70 13.57 8.53 -86.92 -0.74 12.83 16 13 O -0.60 -13.98 16.00 5.29 0.08 -13.89 16 14 N -0.75 -10.85 5.08 -58.69 -0.30 -11.15 16 15 C 0.17 2.15 2.45 -67.94 -0.17 1.99 16 16 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 17 C -0.13 -1.65 5.49 -26.73 -0.15 -1.80 16 18 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 19 C -0.11 -0.98 5.50 -26.73 -0.15 -1.12 16 20 C 0.10 0.82 3.25 -67.68 -0.22 0.60 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 22 N -0.85 -6.27 9.25 -4.64 -0.04 -6.31 16 23 C -0.12 -1.16 4.93 -26.71 -0.13 -1.30 16 24 C -0.19 -4.00 9.96 -26.73 -0.27 -4.27 16 25 C -0.17 -3.90 8.96 -26.73 -0.24 -4.14 16 26 H 0.28 7.98 6.08 -40.82 -0.25 7.73 16 27 H 0.06 1.63 7.65 -51.93 -0.40 1.24 16 28 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.40 7.31 8.35 -40.82 -0.34 6.97 16 30 H 0.39 4.73 8.62 -40.82 -0.35 4.38 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.34 2.02 9.04 -39.29 -0.36 1.67 16 38 H 0.34 2.17 8.99 -39.29 -0.35 1.82 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -31.04 353.96 -9.94 -40.98 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -7.56 Total: 14.96 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.77 Total: -9.04 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.06 Total: -57.55 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.08 Total: 19.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.04 -9.94 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418128369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.393 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds