Wall clock time and date at job start Tue Mar 31 2020 05:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46871 * 300.00447 * 3 2 1 6 6 H 1.48498 * 109.46755 * 60.00130 * 3 2 1 7 7 C 1.37874 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00177 * 173.55538 * 7 2 1 9 9 C 1.50704 * 119.99901 * 353.54742 * 7 2 1 10 10 C 1.52995 * 115.54927 * 85.40903 * 9 7 2 11 11 N 1.46500 * 109.47005 * 65.14395 * 10 9 7 12 12 C 1.34780 * 119.99835 * 178.28599 * 11 10 9 13 13 O 1.21590 * 120.00103 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99939 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00017 * 179.71997 * 14 12 11 16 16 H 1.09001 * 109.47026 * 35.27387 * 15 14 12 17 17 C 1.52989 * 109.47241 * 275.26994 * 15 14 12 18 18 C 1.52998 * 109.47493 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47009 * 59.99667 * 18 17 15 20 20 C 1.52989 * 109.47265 * 300.00473 * 19 18 17 21 21 C 1.52998 * 109.47493 * 59.99823 * 20 19 18 22 22 H 1.09001 * 109.46881 * 59.99541 * 21 20 19 23 23 N 1.46903 * 109.47505 * 180.02562 * 21 20 19 24 24 C 1.53005 * 117.50107 * 231.08316 * 9 7 2 25 25 C 1.53008 * 117.49815 * 299.74332 * 9 7 2 26 26 H 0.97000 * 120.00568 * 5.05621 * 1 2 3 27 27 H 1.08999 * 109.47311 * 305.14365 * 10 9 7 28 28 H 1.09004 * 109.47210 * 185.14586 * 10 9 7 29 29 H 0.96991 * 120.00178 * 358.27973 * 11 10 9 30 30 H 0.97000 * 119.99958 * 359.97438 * 14 12 11 31 31 H 1.09001 * 109.47431 * 300.00145 * 17 15 14 32 32 H 1.08999 * 109.47486 * 59.99962 * 17 15 14 33 33 H 1.09006 * 109.47129 * 300.00074 * 18 17 15 34 34 H 1.08997 * 109.47952 * 180.02562 * 18 17 15 35 35 H 1.09008 * 109.46967 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46652 * 60.00652 * 19 18 17 37 37 H 1.09001 * 109.47431 * 299.99701 * 20 19 18 38 38 H 1.09007 * 109.47307 * 180.02562 * 20 19 18 39 39 H 1.00899 * 110.99496 * 300.00231 * 23 21 20 40 40 H 1.00899 * 110.99690 * 63.95400 * 23 21 20 41 41 H 1.08996 * 117.49566 * 215.00192 * 24 9 7 42 42 H 1.09001 * 117.49580 * 0.02562 * 24 9 7 43 43 H 1.09003 * 117.49534 * 359.96947 * 25 9 7 44 44 H 1.08992 * 117.49911 * 144.97410 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1968 -0.1055 9 6 1.2583 -2.4951 0.1456 10 6 0.7022 -3.0861 -1.1515 11 7 1.8113 -3.4584 -2.0333 12 6 1.5600 -4.0347 -3.2254 13 8 0.4130 -4.2460 -3.5689 14 7 2.5803 -4.3778 -4.0364 15 6 2.3075 -5.0098 -5.3296 16 1 1.3923 -4.5942 -5.7512 17 6 2.1404 -6.5180 -5.1350 18 6 1.8561 -7.1782 -6.4856 19 6 3.0234 -6.9132 -7.4386 20 6 3.1905 -5.4049 -7.6332 21 6 3.4748 -4.7447 -6.2826 22 1 4.3898 -5.1603 -5.8606 23 7 3.6346 -3.2964 -6.4694 24 6 1.7472 -3.4738 1.2152 25 6 0.4418 -2.7016 1.4230 26 1 -0.4851 0.8367 -0.0740 27 1 0.0755 -2.3458 -1.6487 28 1 0.1076 -3.9704 -0.9222 29 1 2.7263 -3.2901 -1.7592 30 1 3.4954 -4.2095 -3.7623 31 1 3.0556 -6.9336 -4.7134 32 1 1.3091 -6.7069 -4.4558 33 1 0.9410 -6.7628 -6.9077 34 1 1.7366 -8.2527 -6.3470 35 1 2.8206 -7.3832 -8.4010 36 1 3.9384 -7.3287 -7.0166 37 1 2.2754 -4.9894 -8.0553 38 1 4.0218 -5.2161 -8.3125 39 1 4.3998 -3.0949 -7.0955 40 1 2.7778 -2.8777 -6.7990 41 1 1.6727 -4.5386 0.9948 42 1 2.6084 -3.1763 1.8136 43 1 0.4449 -1.8966 2.1579 44 1 -0.4915 -3.2582 1.3393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424471925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:07 Heat of formation + Delta-G solvation = -28.126033 kcal Electronic energy + Delta-G solvation = -22666.640028 eV Core-core repulsion = 19425.471844 eV Total energy + Delta-G solvation = -3241.168184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.87710 -38.35067 -36.61111 -33.88177 -33.47805 -33.07934 -31.91113 -29.65150 -27.76437 -25.96484 -24.93577 -22.68584 -21.82377 -21.13420 -20.28085 -19.89881 -19.28866 -17.53373 -16.65850 -15.90067 -15.73073 -15.06484 -14.80432 -14.55650 -14.36917 -14.06645 -13.83699 -13.64452 -13.29676 -13.05151 -12.89886 -12.55514 -12.50006 -11.75613 -11.52005 -11.37547 -11.32532 -11.13847 -10.97710 -10.86558 -10.79622 -10.47455 -10.35309 -10.21812 -9.62653 -9.41664 -8.89803 -8.77400 -8.64184 -8.44386 -8.18245 -7.84662 -6.02269 -4.10321 3.28986 3.33850 3.37740 3.40250 3.93962 4.30207 4.40193 4.50580 4.61602 4.83179 4.94906 4.98922 5.11996 5.24911 5.26105 5.31917 5.33965 5.44371 5.54577 5.68157 5.83680 5.87404 5.95388 5.98822 6.09685 6.22290 6.29406 6.40590 6.53934 6.67328 6.75053 6.93157 6.94712 7.06337 7.14333 7.31262 7.43817 7.51814 7.55269 7.75298 7.87310 8.40419 8.82367 8.90858 9.36777 9.56162 11.05665 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.004053 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.596667 B = 6906.193331 C = 7693.860791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.721 5.721 12 C 0.699 3.301 13 O -0.609 6.609 14 N -0.737 5.737 15 C 0.177 3.823 16 H 0.082 0.918 17 C -0.131 4.131 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.150 4.150 21 C 0.084 3.916 22 H 0.083 0.917 23 N -0.839 5.839 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.395 0.605 30 H 0.395 0.605 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.339 0.661 40 H 0.343 0.657 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.862 -11.556 -13.213 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.373 5.373 12 C 0.399 3.601 13 O -0.490 6.490 14 N -0.392 5.392 15 C 0.070 3.930 16 H 0.100 0.900 17 C -0.170 4.170 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.190 4.190 21 C -0.028 4.028 22 H 0.101 0.899 23 N -0.367 5.367 24 C -0.248 4.248 25 C -0.187 4.187 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.228 0.772 30 H 0.228 0.772 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.759 -11.540 -12.624 18.391 hybrid contribution 1.006 0.954 -0.787 1.594 sum 7.764 -10.586 -13.411 18.767 Atomic orbital electron populations 1.69986 1.05877 1.26726 1.48491 1.24977 0.94779 0.98902 0.94357 0.86584 0.80195 0.83942 0.77546 1.19737 1.21082 1.21032 1.20371 0.92834 0.88608 1.51699 0.92198 1.19052 0.98483 0.93873 0.85791 1.20804 0.86717 0.96505 0.90018 1.45111 1.11152 1.63781 1.17247 1.16043 0.84623 0.78616 0.80798 1.90848 1.20017 1.62416 1.75670 1.44915 1.08410 1.66850 1.18977 1.20606 0.97597 0.91883 0.82874 0.90002 1.21973 1.02455 0.95170 0.97440 1.21514 0.98346 1.00452 0.95271 1.21501 0.99001 0.95489 0.99487 1.22384 1.01905 0.96741 0.97998 1.21745 0.98746 0.88201 0.94147 0.89877 1.58808 1.10567 1.10204 1.57099 1.23014 0.98591 0.95680 1.07520 1.22489 0.92273 1.01072 1.02820 0.92964 0.91356 0.94919 0.77160 0.77175 0.91954 0.90861 0.91774 0.91787 0.92064 0.91852 0.91743 0.91829 0.84868 0.84409 0.91689 0.90448 0.89871 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.69 12.91 55.43 0.72 -23.97 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.50 -13.02 8.63 -34.44 -0.30 -13.32 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.03 0.69 1.38 -155.65 -0.21 0.48 16 10 C 0.18 4.33 5.50 -4.04 -0.02 4.30 16 11 N -0.72 -14.67 5.48 -65.23 -0.36 -15.02 16 12 C 0.70 13.85 8.53 -86.92 -0.74 13.11 16 13 O -0.61 -14.33 16.01 5.29 0.08 -14.25 16 14 N -0.74 -10.98 4.91 -58.68 -0.29 -11.27 16 15 C 0.18 2.25 2.05 -67.93 -0.14 2.11 16 16 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 17 C -0.13 -1.52 5.49 -26.74 -0.15 -1.66 16 18 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 19 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 20 C -0.15 -1.18 5.49 -26.74 -0.15 -1.33 16 21 C 0.08 0.80 2.77 -67.71 -0.19 0.62 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 N -0.84 -8.31 9.09 -4.66 -0.04 -8.35 16 24 C -0.21 -4.46 9.96 -26.69 -0.27 -4.73 16 25 C -0.15 -3.45 9.42 -26.69 -0.25 -3.70 16 26 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 27 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 28 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.40 7.40 8.38 -40.82 -0.34 7.06 16 30 H 0.39 5.19 8.62 -40.82 -0.35 4.84 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.34 2.65 9.04 -39.29 -0.36 2.29 16 40 H 0.34 3.56 8.98 -39.29 -0.35 3.21 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 44 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -30.36 356.53 -10.04 -40.40 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -7.68 Total: 15.74 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.83 Total: -4.53 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.03 Total: -58.62 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.36 -10.04 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424471925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.276 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds