Wall clock time and date at job start Tue Mar 31 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46871 * 300.00447 * 3 2 1 6 6 H 1.48498 * 109.46755 * 60.00130 * 3 2 1 7 7 C 1.37874 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00177 * 173.55538 * 7 2 1 9 9 C 1.50704 * 119.99901 * 353.54742 * 7 2 1 10 10 C 1.52995 * 115.54927 * 85.40903 * 9 7 2 11 11 N 1.46500 * 109.47005 * 65.14395 * 10 9 7 12 12 C 1.34780 * 119.99835 * 178.28599 * 11 10 9 13 13 O 1.21590 * 120.00103 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99939 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00017 * 179.71997 * 14 12 11 16 16 H 1.09001 * 109.47026 * 35.27387 * 15 14 12 17 17 C 1.52989 * 109.47241 * 275.26994 * 15 14 12 18 18 C 1.52998 * 109.47493 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47009 * 59.99667 * 18 17 15 20 20 C 1.52989 * 109.47265 * 300.00473 * 19 18 17 21 21 C 1.52998 * 109.47493 * 59.99823 * 20 19 18 22 22 H 1.09001 * 109.46881 * 59.99541 * 21 20 19 23 23 N 1.46903 * 109.47505 * 180.02562 * 21 20 19 24 24 C 1.53005 * 117.50107 * 231.08316 * 9 7 2 25 25 C 1.53008 * 117.49815 * 299.74332 * 9 7 2 26 26 H 0.97000 * 120.00568 * 5.05621 * 1 2 3 27 27 H 1.08999 * 109.47311 * 305.14365 * 10 9 7 28 28 H 1.09004 * 109.47210 * 185.14586 * 10 9 7 29 29 H 0.96991 * 120.00178 * 358.27973 * 11 10 9 30 30 H 0.97000 * 119.99958 * 359.97438 * 14 12 11 31 31 H 1.09001 * 109.47431 * 300.00145 * 17 15 14 32 32 H 1.08999 * 109.47486 * 59.99962 * 17 15 14 33 33 H 1.09006 * 109.47129 * 300.00074 * 18 17 15 34 34 H 1.08997 * 109.47952 * 180.02562 * 18 17 15 35 35 H 1.09008 * 109.46967 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46652 * 60.00652 * 19 18 17 37 37 H 1.09001 * 109.47431 * 299.99701 * 20 19 18 38 38 H 1.09007 * 109.47307 * 180.02562 * 20 19 18 39 39 H 1.00899 * 110.99496 * 300.00231 * 23 21 20 40 40 H 1.00899 * 110.99690 * 63.95400 * 23 21 20 41 41 H 1.08996 * 117.49566 * 215.00192 * 24 9 7 42 42 H 1.09001 * 117.49580 * 0.02562 * 24 9 7 43 43 H 1.09003 * 117.49534 * 359.96947 * 25 9 7 44 44 H 1.08992 * 117.49911 * 144.97410 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1968 -0.1055 9 6 1.2583 -2.4951 0.1456 10 6 0.7022 -3.0861 -1.1515 11 7 1.8113 -3.4584 -2.0333 12 6 1.5600 -4.0347 -3.2254 13 8 0.4130 -4.2460 -3.5689 14 7 2.5803 -4.3778 -4.0364 15 6 2.3075 -5.0098 -5.3296 16 1 1.3923 -4.5942 -5.7512 17 6 2.1404 -6.5180 -5.1350 18 6 1.8561 -7.1782 -6.4856 19 6 3.0234 -6.9132 -7.4386 20 6 3.1905 -5.4049 -7.6332 21 6 3.4748 -4.7447 -6.2826 22 1 4.3898 -5.1603 -5.8606 23 7 3.6346 -3.2964 -6.4694 24 6 1.7472 -3.4738 1.2152 25 6 0.4418 -2.7016 1.4230 26 1 -0.4851 0.8367 -0.0740 27 1 0.0755 -2.3458 -1.6487 28 1 0.1076 -3.9704 -0.9222 29 1 2.7263 -3.2901 -1.7592 30 1 3.4954 -4.2095 -3.7623 31 1 3.0556 -6.9336 -4.7134 32 1 1.3091 -6.7069 -4.4558 33 1 0.9410 -6.7628 -6.9077 34 1 1.7366 -8.2527 -6.3470 35 1 2.8206 -7.3832 -8.4010 36 1 3.9384 -7.3287 -7.0166 37 1 2.2754 -4.9894 -8.0553 38 1 4.0218 -5.2161 -8.3125 39 1 4.3998 -3.0949 -7.0955 40 1 2.7778 -2.8777 -6.7990 41 1 1.6727 -4.5386 0.9948 42 1 2.6084 -3.1763 1.8136 43 1 0.4449 -1.8966 2.1579 44 1 -0.4915 -3.2582 1.3393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424471925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:06 Heat of formation + Delta-G solvation = -50.020500 kcal Electronic energy + Delta-G solvation = -22667.589444 eV Core-core repulsion = 19425.471844 eV Total energy + Delta-G solvation = -3242.117599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18503 -39.58107 -38.39179 -35.06430 -34.74779 -34.42635 -33.93358 -30.61576 -28.76293 -27.78379 -26.75881 -23.63509 -22.95294 -22.64078 -21.58639 -21.19864 -20.95451 -19.06882 -18.14947 -17.44874 -16.69963 -16.58635 -16.21917 -16.17724 -15.70615 -15.41618 -15.12543 -14.77764 -14.51447 -14.37664 -14.01769 -13.87056 -13.61979 -13.42031 -13.31491 -12.91207 -12.82282 -12.31598 -12.20319 -12.14706 -12.02563 -11.96291 -11.57796 -11.46433 -11.27257 -11.11238 -10.82931 -10.44600 -10.15349 -10.00780 -9.53022 -9.48724 -8.07386 -6.20243 1.42443 1.45622 1.55343 1.91562 2.34543 2.44559 3.20791 3.35781 3.50687 3.65633 3.71293 3.98667 4.12585 4.17467 4.27516 4.27674 4.42507 4.47817 4.53823 4.58716 4.68059 4.76678 4.84377 4.90185 5.00516 5.03365 5.13738 5.15640 5.15803 5.24122 5.28909 5.34233 5.48162 5.61674 5.63444 5.71730 5.78167 5.82771 6.23623 6.25922 6.39687 6.61687 6.86705 7.33750 7.48987 7.78907 9.00441 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.004053 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.596667 B = 6906.193331 C = 7693.860791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.006 3.994 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.696 3.304 13 O -0.650 6.650 14 N -0.717 5.717 15 C 0.173 3.827 16 H 0.051 0.949 17 C -0.126 4.126 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.144 4.144 21 C 0.094 3.906 22 H 0.097 0.903 23 N -0.850 5.850 24 C -0.175 4.175 25 C -0.159 4.159 26 H 0.258 0.742 27 H 0.022 0.978 28 H 0.029 0.971 29 H 0.405 0.595 30 H 0.407 0.593 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.353 0.647 40 H 0.338 0.662 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 -12.584 -14.161 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.005 3.995 10 C 0.076 3.924 11 N -0.369 5.369 12 C 0.396 3.604 13 O -0.534 6.534 14 N -0.371 5.371 15 C 0.067 3.933 16 H 0.069 0.931 17 C -0.165 4.165 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.184 4.184 21 C -0.018 4.018 22 H 0.115 0.885 23 N -0.380 5.380 24 C -0.212 4.212 25 C -0.197 4.197 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.240 0.760 30 H 0.243 0.757 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.611 -12.587 -13.595 20.871 hybrid contribution 0.136 1.233 -0.515 1.343 sum 9.746 -11.354 -14.109 20.566 Atomic orbital electron populations 1.70115 1.07305 1.27194 1.50030 1.25706 0.95441 1.02092 0.94411 0.85628 0.79530 0.80121 0.77067 1.18492 1.21510 1.21033 1.20675 0.93089 0.89543 1.50599 0.91861 1.19058 0.99685 0.94497 0.86229 1.20350 0.87079 0.94935 0.90023 1.44893 1.10774 1.63976 1.17296 1.16226 0.84913 0.78400 0.80895 1.90820 1.22115 1.63994 1.76461 1.44813 1.07845 1.65579 1.18883 1.20821 0.98007 0.92310 0.82148 0.93072 1.21900 1.01776 0.94473 0.98369 1.21504 0.98848 1.00769 0.94202 1.21489 0.98493 0.95322 0.99692 1.22338 1.02383 0.96731 0.96989 1.21665 0.97471 0.88430 0.94264 0.88539 1.58804 1.10923 1.10390 1.57838 1.22997 0.97339 0.96209 1.04674 1.22432 0.93754 1.01413 1.02141 0.93296 0.95913 0.95229 0.76011 0.75714 0.90377 0.94285 0.92966 0.90629 0.90579 0.90593 0.92537 0.89727 0.83284 0.84930 0.89435 0.89451 0.91724 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.50 12.91 21.45 0.28 -52.22 16 2 C 0.02 1.30 5.39 84.65 0.46 1.75 16 3 Si 0.95 42.99 29.55 68.60 2.03 45.02 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.50 -26.09 8.63 25.60 0.22 -25.87 16 8 H 0.06 3.18 7.82 -2.91 -0.02 3.16 16 9 C 0.01 0.29 1.38 -52.92 -0.07 0.22 16 10 C 0.20 9.71 5.50 86.38 0.48 10.18 16 11 N -0.72 -29.23 5.48 -478.54 -2.62 -31.86 16 12 C 0.70 27.95 8.53 179.06 1.53 29.47 16 13 O -0.65 -31.78 16.01 -4.00 -0.06 -31.85 16 14 N -0.72 -20.98 4.91 -457.82 -2.25 -23.23 16 15 C 0.17 4.31 2.05 44.99 0.09 4.41 16 16 H 0.05 1.61 7.58 -2.39 -0.02 1.60 16 17 C -0.13 -2.83 5.49 30.59 0.17 -2.66 16 18 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 19 C -0.11 -1.37 5.92 30.59 0.18 -1.19 16 20 C -0.14 -1.89 5.49 30.59 0.17 -1.72 16 21 C 0.09 1.60 2.77 44.92 0.12 1.72 16 22 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 23 N -0.85 -15.38 9.09 -168.67 -1.53 -16.91 16 24 C -0.18 -7.10 9.96 30.62 0.30 -6.79 16 25 C -0.16 -7.41 9.42 30.62 0.29 -7.12 16 26 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 27 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 29 H 0.40 14.78 8.38 -92.72 -0.78 14.00 16 30 H 0.41 10.02 8.62 -92.71 -0.80 9.22 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.35 4.66 9.04 -89.69 -0.81 3.85 16 40 H 0.34 6.77 8.98 -89.69 -0.81 5.96 16 41 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -67.05 356.53 -2.23 -69.28 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -2.17 Total: 41.15 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.11 Total: 0.62 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -6.13 Total: -124.22 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.06 Total: -31.85 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.05 -2.23 -69.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424471925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds