Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99888 * 2 1 4 4 H 1.48500 * 109.47150 * 89.99635 * 3 2 1 5 5 H 1.48496 * 109.47147 * 209.99597 * 3 2 1 6 6 H 1.48499 * 109.47358 * 329.99674 * 3 2 1 7 7 C 1.37876 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99901 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99835 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46929 * 180.02562 * 9 7 2 11 11 C 1.34784 * 120.00118 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99679 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99499 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46988 * 175.27065 * 14 13 11 16 16 H 1.08995 * 109.46373 * 305.34568 * 15 14 13 17 17 C 1.53042 * 109.46252 * 65.32152 * 15 14 13 18 18 C 1.53123 * 109.27976 * 179.19626 * 17 15 14 19 19 C 1.53118 * 109.15772 * 302.34698 * 18 17 15 20 20 C 1.53030 * 109.28158 * 57.65392 * 19 18 17 21 21 N 1.46842 * 109.46392 * 185.37262 * 15 14 13 22 22 C 1.46903 * 110.99910 * 54.14604 * 21 15 14 23 23 C 1.52998 * 117.49802 * 246.95353 * 22 21 15 24 24 C 1.52999 * 117.49913 * 178.33056 * 22 21 15 25 25 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47448 * 300.00302 * 9 7 2 27 27 H 1.08993 * 109.47346 * 60.00634 * 9 7 2 28 28 H 0.96996 * 120.00363 * 0.02562 * 10 9 7 29 29 H 0.96996 * 119.99762 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.47194 * 295.26630 * 14 13 11 31 31 H 1.08996 * 109.47685 * 55.27075 * 14 13 11 32 32 H 1.08997 * 109.50221 * 299.13896 * 17 15 14 33 33 H 1.08996 * 109.50571 * 59.25419 * 17 15 14 34 34 H 1.09001 * 109.51868 * 62.24904 * 18 17 15 35 35 H 1.09001 * 109.52169 * 182.37473 * 18 17 15 36 36 H 1.09003 * 109.50153 * 177.59662 * 19 18 17 37 37 H 1.09003 * 109.50280 * 297.66860 * 19 18 17 38 38 H 1.09001 * 109.46172 * 60.83549 * 20 19 18 39 39 H 1.09002 * 109.46826 * 180.81249 * 20 19 18 40 40 H 1.08998 * 115.54627 * 32.66335 * 22 21 15 41 41 H 1.09000 * 117.49869 * 359.97438 * 23 22 21 42 42 H 1.09007 * 117.49410 * 145.02277 * 23 22 21 43 43 H 1.09001 * 117.49628 * 214.98306 * 24 22 21 44 44 H 1.08995 * 117.49803 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4402 -0.6999 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 5.3249 -2.8215 0.0020 12 8 6.1150 -1.8974 0.0034 13 7 5.7741 -4.0923 0.0013 14 6 7.2145 -4.3599 0.0030 15 6 7.4531 -5.8665 0.1208 16 1 6.9341 -6.2488 0.9997 17 6 6.9195 -6.5667 -1.1311 18 6 7.1784 -8.0717 -1.0178 19 6 8.6796 -8.3108 -0.8337 20 6 9.1621 -7.5601 0.4095 21 7 8.8926 -6.1252 0.2518 22 6 9.4665 -5.3564 1.3642 23 6 10.4616 -4.2472 1.0171 24 6 10.9559 -5.5451 1.6591 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 -0.8888 27 1 3.8744 -0.6801 0.8911 28 1 3.3695 -3.3125 0.0002 29 1 5.1438 -4.8295 0.0006 30 1 7.6531 -3.9941 -0.9255 31 1 7.6776 -3.8515 0.8486 32 1 5.8480 -6.3874 -1.2196 33 1 7.4284 -6.1752 -2.0119 34 1 6.6380 -8.4706 -0.1594 35 1 6.8380 -8.5692 -1.9259 36 1 8.8656 -9.3777 -0.7097 37 1 9.2162 -7.9474 -1.7101 38 1 8.6349 -7.9344 1.2871 39 1 10.2335 -7.7166 0.5353 40 1 8.8026 -5.1901 2.2125 41 1 10.6907 -4.0883 -0.0366 42 1 10.4524 -3.3507 1.6372 43 1 11.2719 -5.5025 2.7015 44 1 11.5098 -6.2400 1.0280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426438024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -8.905775 kcal Electronic energy + Delta-G solvation = -22299.939885 eV Core-core repulsion = 19059.605154 eV Total energy + Delta-G solvation = -3240.334731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09512 -39.00667 -36.58325 -34.84572 -34.05721 -32.38234 -32.03839 -31.06477 -27.98504 -25.99623 -24.53986 -22.70560 -22.13617 -21.53300 -20.87377 -20.27798 -19.91229 -18.26091 -16.77476 -16.21389 -16.12430 -15.52070 -15.14308 -14.80664 -14.45461 -14.28518 -14.17396 -13.88090 -13.60040 -13.39831 -13.11061 -12.78885 -12.54483 -12.31406 -12.17860 -11.94048 -11.61557 -11.31049 -11.14204 -10.96913 -10.84810 -10.74234 -10.71500 -10.43445 -10.20253 -9.93439 -9.56327 -9.42318 -8.80448 -8.71075 -8.55315 -7.96377 -6.18271 -4.19897 3.09455 3.30295 3.36953 3.46455 3.58062 3.66359 3.86783 4.37106 4.46221 4.51345 4.62978 4.72615 4.76924 4.90749 4.97489 5.00817 5.04619 5.09676 5.17521 5.28842 5.32571 5.38244 5.50783 5.54799 5.63535 5.70411 5.81053 5.84018 5.87084 5.96698 5.98856 6.02170 6.16849 6.73353 6.77958 6.82064 6.94505 7.15679 7.28698 7.45081 7.61321 8.31692 8.72851 8.85388 9.26094 9.43993 10.93760 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.003320 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.041938 B = 8432.515300 C = 9271.320668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.284 1.284 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.723 5.723 11 C 0.696 3.304 12 O -0.603 6.603 13 N -0.755 5.755 14 C 0.149 3.851 15 C 0.080 3.920 16 H 0.047 0.953 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.118 4.118 20 C 0.059 3.941 21 N -0.502 5.502 22 C 0.003 3.997 23 C -0.158 4.158 24 C -0.178 4.178 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.392 0.608 29 H 0.391 0.609 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.106 -18.207 0.862 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.210 1.210 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.395 3.605 12 O -0.482 6.482 13 N -0.413 5.413 14 C 0.024 3.976 15 C -0.028 4.028 16 H 0.065 0.935 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.156 4.156 20 C -0.068 4.068 21 N -0.227 5.227 22 C -0.106 4.106 23 C -0.196 4.196 24 C -0.215 4.215 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.225 0.775 29 H 0.224 0.776 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.874 -17.037 0.427 26.181 hybrid contribution -0.720 -0.091 0.808 1.086 sum 19.154 -17.129 1.235 25.726 Atomic orbital electron populations 1.69881 1.06219 1.27390 1.49675 1.24782 0.94783 0.99173 0.93911 0.86809 0.80636 0.83171 0.79047 1.19878 1.18392 1.20952 1.21102 0.88607 0.95168 1.53074 0.90326 1.19346 0.94756 0.77702 0.96614 1.45385 1.03713 1.10988 1.77498 1.16080 0.83519 0.82630 0.78268 1.90863 1.55400 1.43186 1.58752 1.45073 1.07362 1.06590 1.82250 1.21026 0.80546 0.93170 1.02842 1.21786 0.87720 0.95302 0.98032 0.93522 1.21674 1.00886 0.94744 0.97803 1.21598 0.96203 0.96318 1.01870 1.21608 0.96232 0.99284 0.98428 1.22074 1.00979 0.86788 0.96987 1.61627 1.12734 1.07138 1.41232 1.22400 0.91723 1.01859 0.94607 1.23093 1.01985 0.92303 1.02241 1.23084 0.95561 1.01311 1.01585 0.92302 0.95920 0.96418 0.77542 0.77567 0.91419 0.91391 0.91107 0.90642 0.92240 0.91574 0.91580 0.91029 0.94876 0.90505 0.89088 0.88029 0.88609 0.88821 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.54 -15.08 9.83 -34.44 -0.34 -15.42 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.24 6.04 4.50 -5.20 -0.02 6.02 16 10 N -0.72 -15.20 5.55 -66.41 -0.37 -15.57 16 11 C 0.70 14.07 8.57 -86.91 -0.74 13.32 16 12 O -0.60 -14.67 16.34 5.29 0.09 -14.58 16 13 N -0.75 -11.12 5.35 -65.22 -0.35 -11.47 16 14 C 0.15 1.99 4.97 -4.04 -0.02 1.97 16 15 C 0.08 0.82 1.92 -67.72 -0.13 0.69 16 16 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 17 C -0.11 -1.03 5.24 -26.65 -0.14 -1.17 16 18 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 19 C -0.12 -0.84 6.09 -26.65 -0.16 -1.01 16 20 C 0.06 0.47 5.32 -3.83 -0.02 0.45 16 21 N -0.50 -4.83 4.64 -218.76 -1.02 -5.85 16 22 C 0.00 0.03 3.71 -67.71 -0.25 -0.23 16 23 C -0.16 -1.51 10.37 -26.73 -0.28 -1.78 16 24 C -0.18 -1.41 9.69 -26.73 -0.26 -1.67 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 28 H 0.39 7.19 8.33 -40.82 -0.34 6.85 16 29 H 0.39 4.63 7.55 -40.82 -0.31 4.33 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.00 6.66 -51.93 -0.35 0.66 16 32 H 0.07 0.62 7.13 -51.93 -0.37 0.25 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.56 6.58 -51.93 -0.34 0.22 16 40 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.73 7.12 -51.93 -0.37 0.36 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -32.60 347.51 -10.41 -43.01 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.48 Total: 5.94 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.62 Total: 2.20 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.96 Total: -58.91 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.60 -10.41 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.101 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds