Wall clock time and date at job start Tue Mar 31 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99888 * 2 1 4 4 H 1.48500 * 109.47150 * 89.99635 * 3 2 1 5 5 H 1.48496 * 109.47147 * 209.99597 * 3 2 1 6 6 H 1.48499 * 109.47358 * 329.99674 * 3 2 1 7 7 C 1.37876 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99901 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99835 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46929 * 180.02562 * 9 7 2 11 11 C 1.34784 * 120.00118 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99679 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99499 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46988 * 175.27065 * 14 13 11 16 16 H 1.08995 * 109.46373 * 305.34568 * 15 14 13 17 17 C 1.53042 * 109.46252 * 65.32152 * 15 14 13 18 18 C 1.53123 * 109.27976 * 179.19626 * 17 15 14 19 19 C 1.53118 * 109.15772 * 302.34698 * 18 17 15 20 20 C 1.53030 * 109.28158 * 57.65392 * 19 18 17 21 21 N 1.46842 * 109.46392 * 185.37262 * 15 14 13 22 22 C 1.46903 * 110.99910 * 54.14604 * 21 15 14 23 23 C 1.52998 * 117.49802 * 246.95353 * 22 21 15 24 24 C 1.52999 * 117.49913 * 178.33056 * 22 21 15 25 25 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47448 * 300.00302 * 9 7 2 27 27 H 1.08993 * 109.47346 * 60.00634 * 9 7 2 28 28 H 0.96996 * 120.00363 * 0.02562 * 10 9 7 29 29 H 0.96996 * 119.99762 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.47194 * 295.26630 * 14 13 11 31 31 H 1.08996 * 109.47685 * 55.27075 * 14 13 11 32 32 H 1.08997 * 109.50221 * 299.13896 * 17 15 14 33 33 H 1.08996 * 109.50571 * 59.25419 * 17 15 14 34 34 H 1.09001 * 109.51868 * 62.24904 * 18 17 15 35 35 H 1.09001 * 109.52169 * 182.37473 * 18 17 15 36 36 H 1.09003 * 109.50153 * 177.59662 * 19 18 17 37 37 H 1.09003 * 109.50280 * 297.66860 * 19 18 17 38 38 H 1.09001 * 109.46172 * 60.83549 * 20 19 18 39 39 H 1.09002 * 109.46826 * 180.81249 * 20 19 18 40 40 H 1.08998 * 115.54627 * 32.66335 * 22 21 15 41 41 H 1.09000 * 117.49869 * 359.97438 * 23 22 21 42 42 H 1.09007 * 117.49410 * 145.02277 * 23 22 21 43 43 H 1.09001 * 117.49628 * 214.98306 * 24 22 21 44 44 H 1.08995 * 117.49803 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4402 -0.6999 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 5.3249 -2.8215 0.0020 12 8 6.1150 -1.8974 0.0034 13 7 5.7741 -4.0923 0.0013 14 6 7.2145 -4.3599 0.0030 15 6 7.4531 -5.8665 0.1208 16 1 6.9341 -6.2488 0.9997 17 6 6.9195 -6.5667 -1.1311 18 6 7.1784 -8.0717 -1.0178 19 6 8.6796 -8.3108 -0.8337 20 6 9.1621 -7.5601 0.4095 21 7 8.8926 -6.1252 0.2518 22 6 9.4665 -5.3564 1.3642 23 6 10.4616 -4.2472 1.0171 24 6 10.9559 -5.5451 1.6591 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 -0.8888 27 1 3.8744 -0.6801 0.8911 28 1 3.3695 -3.3125 0.0002 29 1 5.1438 -4.8295 0.0006 30 1 7.6531 -3.9941 -0.9255 31 1 7.6776 -3.8515 0.8486 32 1 5.8480 -6.3874 -1.2196 33 1 7.4284 -6.1752 -2.0119 34 1 6.6380 -8.4706 -0.1594 35 1 6.8380 -8.5692 -1.9259 36 1 8.8656 -9.3777 -0.7097 37 1 9.2162 -7.9474 -1.7101 38 1 8.6349 -7.9344 1.2871 39 1 10.2335 -7.7166 0.5353 40 1 8.8026 -5.1901 2.2125 41 1 10.6907 -4.0883 -0.0366 42 1 10.4524 -3.3507 1.6372 43 1 11.2719 -5.5025 2.7015 44 1 11.5098 -6.2400 1.0280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426438024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:09 Heat of formation + Delta-G solvation = -32.630214 kcal Electronic energy + Delta-G solvation = -22300.968654 eV Core-core repulsion = 19059.605154 eV Total energy + Delta-G solvation = -3241.363500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18923 -40.31233 -37.33756 -36.33721 -35.72439 -34.40676 -32.83930 -32.04717 -29.83426 -27.15867 -25.21974 -24.19689 -23.23406 -22.51705 -21.91882 -21.58645 -20.68433 -19.91636 -18.38403 -17.58511 -17.33734 -16.69843 -16.46553 -16.10984 -15.80386 -15.34600 -15.16407 -14.90013 -14.79452 -14.54755 -14.43571 -14.26596 -14.13764 -13.50743 -13.20433 -13.02702 -12.87846 -12.68964 -12.33128 -12.06972 -11.92080 -11.80343 -11.65032 -11.55802 -11.39098 -11.32909 -11.13277 -10.93073 -10.91051 -10.31539 -9.66079 -9.29227 -8.39184 -6.45848 1.34135 1.36019 1.49753 1.78138 2.20520 2.29691 2.74979 2.87935 2.96529 3.51434 3.63948 3.77643 3.96851 4.03065 4.08675 4.15541 4.24279 4.31899 4.34960 4.57040 4.64221 4.70757 4.75538 4.76734 4.87466 4.90600 4.95726 5.02312 5.06177 5.09945 5.12089 5.23121 5.25769 5.28502 5.31582 5.46611 5.50665 5.55399 5.96933 6.09640 6.14341 6.28214 6.56183 7.14580 7.26195 7.66058 8.75555 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.003320 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.041938 B = 8432.515300 C = 9271.320668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.252 3.748 10 N -0.721 5.721 11 C 0.695 3.305 12 O -0.644 6.644 13 N -0.730 5.730 14 C 0.154 3.846 15 C 0.091 3.909 16 H 0.051 0.949 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.058 3.942 21 N -0.509 5.509 22 C -0.009 4.009 23 C -0.172 4.172 24 C -0.155 4.155 25 H 0.273 0.727 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.405 0.595 29 H 0.409 0.591 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.304 -19.620 1.064 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.186 1.186 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.526 6.526 13 N -0.388 5.388 14 C 0.029 3.971 15 C -0.018 4.018 16 H 0.069 0.931 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.069 4.069 21 N -0.234 5.234 22 C -0.118 4.118 23 C -0.210 4.210 24 C -0.192 4.192 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.240 0.760 29 H 0.245 0.755 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.071 -18.530 0.630 28.067 hybrid contribution -1.078 0.264 0.743 1.335 sum 19.994 -18.266 1.373 27.116 Atomic orbital electron populations 1.69975 1.07646 1.28621 1.50764 1.25568 0.95534 1.02613 0.93583 0.85863 0.79255 0.79344 0.79472 1.18978 1.18553 1.19718 1.21271 0.89834 0.94623 1.52571 0.92191 1.18947 0.93055 0.79799 0.95481 1.45092 1.04524 1.09936 1.77922 1.16181 0.82706 0.83737 0.77891 1.90835 1.56253 1.45021 1.60538 1.44841 1.08514 1.05187 1.80295 1.21059 0.79019 0.95572 1.01448 1.21656 0.88587 0.92717 0.98854 0.93068 1.21675 1.00812 0.95969 0.96588 1.21585 0.96628 0.94860 1.02583 1.21608 0.95760 1.00208 0.97695 1.22161 1.01675 0.85539 0.97477 1.61637 1.12034 1.08353 1.41380 1.22424 0.92584 1.02255 0.94491 1.23071 1.03146 0.92967 1.01852 1.23132 0.94051 0.99755 1.02298 0.91820 0.97217 0.97341 0.75968 0.75475 0.92902 0.92768 0.90804 0.91706 0.91682 0.90682 0.89794 0.91656 0.94701 0.89573 0.89873 0.88971 0.89020 0.87482 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 2 C 0.03 1.56 5.47 84.65 0.46 2.02 16 3 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 4 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.55 -30.50 9.83 25.60 0.25 -30.25 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 9 C 0.25 12.73 4.50 85.63 0.38 13.11 16 10 N -0.72 -30.03 5.55 -482.29 -2.68 -32.71 16 11 C 0.70 27.89 8.57 179.05 1.53 29.42 16 12 O -0.64 -31.52 16.34 -3.98 -0.07 -31.58 16 13 N -0.73 -20.90 5.35 -478.53 -2.56 -23.46 16 14 C 0.15 4.05 4.97 86.38 0.43 4.48 16 15 C 0.09 1.73 1.92 44.94 0.09 1.82 16 16 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 17 C -0.11 -1.86 5.24 30.65 0.16 -1.70 16 18 C -0.12 -1.50 6.00 30.67 0.18 -1.32 16 19 C -0.11 -1.36 6.09 30.64 0.19 -1.17 16 20 C 0.06 0.80 5.32 86.32 0.46 1.26 16 21 N -0.51 -9.12 4.64 -846.04 -3.93 -13.05 16 22 C -0.01 -0.16 3.71 44.91 0.17 0.00 16 23 C -0.17 -3.24 10.37 30.59 0.32 -2.92 16 24 C -0.16 -2.20 9.69 30.59 0.30 -1.91 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.01 0.53 7.20 -2.38 -0.02 0.51 16 27 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 28 H 0.41 14.58 8.33 -92.71 -0.77 13.80 16 29 H 0.41 8.99 7.55 -92.71 -0.70 8.29 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 31 H 0.05 1.61 6.66 -2.39 -0.02 1.59 16 32 H 0.07 1.16 7.13 -2.39 -0.02 1.14 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 1.03 6.58 -2.39 -0.02 1.01 16 40 H 0.08 1.65 7.91 -2.39 -0.02 1.63 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.11 1.33 7.12 -2.39 -0.02 1.32 16 Total: -1.00 -69.56 347.51 -2.66 -72.22 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.54 Total: 24.80 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 4.92 Total: 12.85 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -8.87 Total: -124.87 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.07 Total: -31.58 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -69.56 -2.66 -72.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.592 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds