Wall clock time and date at job start Tue Mar 31 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00133 * 2 1 4 4 H 1.48499 * 109.47639 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46909 * 299.99985 * 3 2 1 6 6 H 1.48501 * 109.46915 * 59.99418 * 3 2 1 7 7 C 1.37877 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00471 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99632 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99840 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00404 * 355.08536 * 11 10 9 13 13 N 1.34781 * 119.99613 * 175.08442 * 11 10 9 14 14 C 1.46499 * 119.99640 * 184.92599 * 13 11 10 15 15 C 1.53008 * 109.47277 * 185.02114 * 14 13 11 16 16 H 1.08994 * 109.46180 * 185.56301 * 15 14 13 17 17 C 1.53036 * 109.45969 * 65.58793 * 15 14 13 18 18 C 1.53110 * 109.27735 * 180.80750 * 17 15 14 19 19 C 1.53123 * 109.16492 * 57.65273 * 18 17 15 20 20 C 1.53038 * 109.27320 * 302.34995 * 19 18 17 21 21 N 1.46840 * 109.51870 * 59.18105 * 20 19 18 22 22 C 1.46898 * 110.99903 * 174.15503 * 21 20 19 23 23 C 1.52999 * 117.50063 * 17.46452 * 22 21 20 24 24 C 1.53004 * 60.00143 * 252.51027 * 23 22 21 25 25 H 0.96994 * 120.00094 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46791 * 59.99915 * 9 7 2 27 27 H 1.08997 * 109.46846 * 299.99796 * 9 7 2 28 28 H 0.96999 * 120.00310 * 359.97438 * 10 9 7 29 29 H 0.96994 * 120.00742 * 4.92917 * 13 11 10 30 30 H 1.08997 * 109.47523 * 65.01996 * 14 13 11 31 31 H 1.08999 * 109.47394 * 305.02013 * 14 13 11 32 32 H 1.08998 * 109.50698 * 60.86418 * 17 15 14 33 33 H 1.09007 * 109.50283 * 300.74464 * 17 15 14 34 34 H 1.09001 * 109.52419 * 297.74736 * 18 17 15 35 35 H 1.09003 * 109.52786 * 177.55884 * 18 17 15 36 36 H 1.08992 * 109.50370 * 182.40479 * 19 18 17 37 37 H 1.08997 * 109.50027 * 62.28363 * 19 18 17 38 38 H 1.08999 * 109.46064 * 179.19590 * 20 19 18 39 39 H 1.09003 * 109.46239 * 299.16876 * 20 19 18 40 40 H 1.09006 * 115.54977 * 163.17376 * 22 21 20 41 41 H 1.08997 * 117.49805 * 0.02562 * 23 22 21 42 42 H 1.09004 * 117.49774 * 145.02404 * 23 22 21 43 43 H 1.08998 * 117.50059 * 252.51158 * 24 23 22 44 44 H 1.08995 * 117.50052 * 107.48570 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5622 -5.1069 0.0897 13 7 2.6258 -5.9062 -0.1000 14 6 2.1322 -7.2812 -0.2093 15 6 3.3152 -8.2514 -0.1828 16 1 2.9576 -9.2651 -0.3630 17 6 3.9968 -8.1869 1.1858 18 6 5.1918 -9.1441 1.2010 19 6 6.1544 -8.7643 0.0724 20 6 5.4100 -8.8120 -1.2640 21 7 4.2770 -7.8787 -1.2280 22 6 3.6220 -7.7951 -2.5402 23 6 3.9072 -8.9133 -3.5447 24 6 4.5094 -7.5228 -3.7566 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 3.1568 -3.4354 0.0002 29 1 3.5800 -5.7321 -0.0996 30 1 1.5873 -7.3983 -1.1460 31 1 1.4673 -7.4962 0.6272 32 1 3.2872 -8.4785 1.9600 33 1 4.3427 -7.1701 1.3726 34 1 4.8420 -10.1658 1.0530 35 1 5.7062 -9.0695 2.1590 36 1 6.9861 -9.4685 0.0511 37 1 6.5341 -7.7568 0.2416 38 1 6.0889 -8.5283 -2.0681 39 1 5.0423 -9.8231 -1.4390 40 1 2.6219 -7.3615 -2.5397 41 1 4.5804 -9.7113 -3.2317 42 1 3.0945 -9.2158 -4.2053 43 1 4.0929 -6.9105 -4.5564 44 1 5.5790 -7.4058 -3.5831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426438025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:12 Heat of formation + Delta-G solvation = -6.531638 kcal Electronic energy + Delta-G solvation = -22660.917562 eV Core-core repulsion = 19420.685782 eV Total energy + Delta-G solvation = -3240.231781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30632 -38.79792 -36.51941 -34.65501 -33.87511 -32.29169 -31.67066 -30.91844 -27.40223 -25.94282 -24.72900 -22.64687 -22.57532 -21.72364 -20.89443 -20.12782 -19.16945 -17.97745 -16.97937 -16.03520 -15.81992 -15.55292 -14.83140 -14.70993 -14.46609 -14.36774 -14.00000 -13.92743 -13.50850 -13.30508 -12.91505 -12.49856 -12.28691 -12.00289 -11.88478 -11.84057 -11.58846 -11.29983 -11.22624 -10.87881 -10.86407 -10.81892 -10.74849 -10.38407 -10.31763 -10.24009 -9.29457 -9.27639 -8.67378 -8.51347 -8.33309 -7.62279 -6.09454 -4.15244 3.28081 3.31250 3.35295 3.38577 3.64924 3.84156 4.09864 4.38865 4.43226 4.53523 4.64067 4.72284 4.76422 4.86224 5.01496 5.03305 5.09706 5.26723 5.29666 5.35224 5.42856 5.43553 5.46887 5.58726 5.67588 5.71759 5.79192 5.82036 5.91807 5.94450 5.98175 6.07067 6.17261 6.85057 6.87094 7.10779 7.26951 7.62957 7.65890 7.67504 8.02071 8.16829 8.85609 9.08747 9.43979 9.59428 11.00967 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.003553 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.586260 B = 7878.241389 C = 8042.147928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.607 6.607 13 N -0.745 5.745 14 C 0.148 3.852 15 C 0.076 3.924 16 H 0.055 0.945 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.118 4.118 20 C 0.051 3.949 21 N -0.498 5.498 22 C 0.023 3.977 23 C -0.225 4.225 24 C -0.170 4.170 25 H 0.264 0.736 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.399 0.601 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.128 0.872 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -20.580 -2.534 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.391 3.609 12 O -0.487 6.487 13 N -0.403 5.403 14 C 0.022 3.978 15 C -0.032 4.032 16 H 0.073 0.927 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.076 4.076 21 N -0.221 5.221 22 C -0.086 4.086 23 C -0.264 4.264 24 C -0.207 4.207 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.146 0.854 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.009 -20.154 -2.333 23.576 hybrid contribution 0.981 0.271 -0.336 1.072 sum 12.989 -19.883 -2.669 23.900 Atomic orbital electron populations 1.69991 1.06080 1.27042 1.49309 1.24943 0.94888 0.99359 0.94878 0.86376 0.79846 0.83083 0.77670 1.19664 1.20869 1.20866 1.21286 0.93308 0.90483 1.52626 0.91919 1.18944 0.87820 0.81185 0.97449 1.45670 1.10669 1.04452 1.77466 1.16183 0.85149 0.81156 0.78366 1.90854 1.14840 1.84321 1.58715 1.44970 1.09262 1.04861 1.81240 1.21103 0.94259 0.80791 1.01652 1.21925 0.92021 0.97199 0.92034 0.92708 1.21647 0.97172 1.00938 0.95320 1.21593 0.96534 0.98997 0.98773 1.21611 0.97610 1.02415 0.93957 1.22206 0.93012 0.94039 0.98373 1.61743 1.08524 1.48935 1.02883 1.22803 0.99270 1.01622 0.84880 1.23543 1.04569 0.93050 1.05283 1.23043 0.99710 0.98275 0.99705 0.92602 0.95982 0.95791 0.78204 0.76648 0.92433 0.91215 0.91073 0.90567 0.92384 0.91654 0.91664 0.90868 0.90544 0.94538 0.85405 0.88668 0.88929 0.88391 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 9 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.20 5.55 -66.42 -0.37 -16.57 16 11 C 0.69 14.72 8.55 -86.91 -0.74 13.97 16 12 O -0.61 -15.59 16.33 5.30 0.09 -15.50 16 13 N -0.74 -11.53 5.08 -65.22 -0.33 -11.86 16 14 C 0.15 1.96 4.73 -4.04 -0.02 1.94 16 15 C 0.08 0.76 2.11 -67.72 -0.14 0.62 16 16 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 17 C -0.11 -1.04 5.26 -26.66 -0.14 -1.18 16 18 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 19 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 20 C 0.05 0.42 4.17 -3.84 -0.02 0.40 16 21 N -0.50 -4.87 4.07 -218.76 -0.89 -5.76 16 22 C 0.02 0.24 5.77 -67.71 -0.39 -0.15 16 23 C -0.23 -1.97 9.65 -26.73 -0.26 -2.22 16 24 C -0.17 -1.60 9.91 -26.73 -0.26 -1.87 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.46 8.34 -40.82 -0.34 7.12 16 29 H 0.40 5.48 7.45 -40.82 -0.30 5.18 16 30 H 0.06 0.80 6.30 -51.93 -0.33 0.48 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.79 7.32 -51.93 -0.38 0.41 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.61 6.35 -51.93 -0.33 0.28 16 39 H 0.04 0.29 6.93 -51.93 -0.36 -0.07 16 40 H 0.13 1.54 5.88 -51.93 -0.31 1.23 16 41 H 0.10 0.77 6.04 -51.93 -0.31 0.45 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.10 0.86 6.94 -51.93 -0.36 0.50 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -32.33 344.56 -10.54 -42.87 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.20 Total: 8.23 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.74 Total: 3.09 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.85 Total: -60.07 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.09 Total: -15.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.33 -10.54 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.335 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds